Package: adme16cod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Rn.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 3902516a40a503302ef732143b2394b9 NeedsCompilation: no Title: Codelink ADME Rat 16-Assay Bioarray annotation data (chip adme16cod) Description: Codelink ADME Rat 16-Assay Bioarray annotation data (chip adme16cod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Rattus_norvegicus, adme16cod Author: Diego Diez Maintainer: Diego Diez organism: Rattus norvegicus manufacturer: Codelink source.ver: src/contrib/adme16cod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ag.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.At.tair.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 925e808d2c9b21a11ed131d483e75ab6 NeedsCompilation: no Title: Affymetrix Affymetrix AG Array annotation data (chip ag) Description: Affymetrix Affymetrix AG Array annotation data (chip ag) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Arabidopsis_thaliana, ag Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana manufacturer: Affymetrix source.ver: src/contrib/ag.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: agcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 5dd14bc6a6d2729f5e7b170105c78e48 NeedsCompilation: no Title: agcdf Description: A package containing an environment representing the AG.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, ag, Arabidopsis_thaliana Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/agcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: agprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 08f7527d4c8a30d8b2f86016a53f075a NeedsCompilation: no Title: Probe sequence data for microarrays of type ag Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was AG\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, ag, Arabidopsis_thaliana Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/agprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: AHCytoBands Version: 0.99.1 Depends: R (>= 3.2.2), methods License: Artistic-2.0 MD5sum: 3dd85d02e7ed3fca4c7898b5e395edeb NeedsCompilation: no Title: CytoBands for AnnotationHub Description: Supplies AnnotationHub with CytoBand information from UCSC. There is a track for each major organism. Giemsa-stained bands are commonly used to decorate chromosomal overviews in visualizations of genomic data. biocViews: DataImport, AnnotationHub Author: Michael Lawrence Maintainer: Michael Lawrence git_url: https://git.bioconductor.org/packages/AHCytoBands git_branch: master git_last_commit: 821428c git_last_commit_date: 2021-02-08 Date/Publication: 2021-10-13 source.ver: src/contrib/AHCytoBands_0.99.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: AHEnsDbs Version: 1.7.0 Depends: R (>= 3.4), methods, ensembldb (>= 1.99.10) Imports: AnnotationHubData (>= 1.5.24) Suggests: BiocStyle, knitr, AnnotationHub (>= 2.7.13), rmarkdown License: Artistic-2.0 MD5sum: 462375547f1f1460b8d03de27e789543 NeedsCompilation: no Title: EnsDbs for AnnotationHub Description: Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species. EnsDb SQLite databases are generated separately from Ensembl MySQL databases using functions from the ensembldb package employing the Ensembl Perl API. biocViews: DataImport, Sequencing, Coverage, AnnotationHubSoftware Author: Johannes Rainer Maintainer: Johannes Rainer VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/AHEnsDbs git_branch: devel git_last_commit: 2cef9f0 git_last_commit_date: 2024-11-08 Date/Publication: 2024-11-13 source.ver: src/contrib/AHEnsDbs_1.7.0.tar.gz vignettes: vignettes/AHEnsDbs/inst/doc/creating-EnsDbs.html vignetteTitles: Provide EnsDb databases for AnnotationHub hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/AHEnsDbs/inst/doc/creating-EnsDbs.R dependencyCount: 128 Package: AHLRBaseDbs Version: 1.8.0 Depends: R (>= 4.1.0) Imports: AnnotationHub (>= 2.22.0) Suggests: BiocStyle, knitr, rmarkdown License: Artistic-2.0 MD5sum: a6628fab5cc4b0b8b129b20082e14380 NeedsCompilation: no Title: LRBaseDbs for AnnotationHub Description: Supplies AnnotationHub with `LRbaseDb` Ligand-Receptor annotation databases for many species. All the SQLite files are generated by our Snakemake workflow [lrbase-workflow](https://github.com/rikenbit/lrbase-workflow). For the details, see the README.md of lrbase-workflow. biocViews: AnnotationData, FunctionalAnnotation, LRBaseDb, AnnotationHub Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut] Maintainer: Koki Tsuyuzaki VignetteBuilder: knitr BugReports: https://github.com/rikenbit/AHLRBaseDbs/issues git_url: https://git.bioconductor.org/packages/AHLRBaseDbs git_branch: devel git_last_commit: 0ee3f5c git_last_commit_date: 2024-03-27 Date/Publication: 2024-04-03 source.ver: src/contrib/AHLRBaseDbs_1.8.0.tar.gz vignettes: vignettes/AHLRBaseDbs/inst/doc/creating-LRBaseDbs.html vignetteTitles: Provide LRBaseDb databases for AnnotationHub hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/AHLRBaseDbs/inst/doc/creating-LRBaseDbs.R dependencyCount: 66 Package: AHMeSHDbs Version: 1.8.0 Depends: R (>= 4.1.0) Imports: AnnotationHub (>= 2.22.0) Suggests: BiocStyle, knitr, rmarkdown License: Artistic-2.0 MD5sum: 4c370cd555a57e564b65d83106d7a7b0 NeedsCompilation: no Title: MeSHDbs for AnnotationHub Description: Supplies AnnotationHub with `MeSHDb` NIH MeSH annotation databases for many species. All the SQLite files and metadata.csv are generated by our Snakemake workflow [mesh-workflow](https://github.com/rikenbit/mesh-workflow). biocViews: AnnotationData, FunctionalAnnotation, MeSHDb, AnnotationHub Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut] Maintainer: Koki Tsuyuzaki VignetteBuilder: knitr BugReports: https://github.com/rikenbit/AHMeSHDbs/issues git_url: https://git.bioconductor.org/packages/AHMeSHDbs git_branch: devel git_last_commit: 922356d git_last_commit_date: 2024-03-27 Date/Publication: 2024-04-03 source.ver: src/contrib/AHMeSHDbs_1.8.0.tar.gz vignettes: vignettes/AHMeSHDbs/inst/doc/creating-MeSHDbs.html vignetteTitles: Provide MeSHDb databases for AnnotationHub hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/AHMeSHDbs/inst/doc/creating-MeSHDbs.R dependencyCount: 66 Package: AHPathbankDbs Version: 0.99.5 Depends: R (>= 4.1.0) Imports: AnnotationHub (>= 2.23.0) Suggests: BiocStyle, magrittr, dplyr, tibble, knitr, rmarkdown License: Artistic-2.0 MD5sum: 70339eae8c03c47248b612b365bda4ff NeedsCompilation: no Title: Metabolites and proteins linked to PathBank pathways (for AnnotationHub) Description: The package provides a comprehensive mapping table of metabolites and proteins linked to PathBank pathways. The tables include HMDB, KEGG, ChEBI, CAS, Drugbank, Uniprot IDs. The tables are provided for each of the 10 species ("Homo sapiens", "Escherichia coli", "Mus musculus", "Arabidopsis thaliana", "Saccharomyces cerevisiae", "Bos taurus", "Caenorhabditis elegans", "Rattus norvegicus", "Drosophila melanogaster", and "Pseudomonas aeruginosa"). These table information can be used for Metabolite Set (and other) Enrichment Analysis. biocViews: AnnotationHub, CustomDBSchema, FunctionalAnnotation Author: Kozo Nishida [aut, cre] () Maintainer: Kozo Nishida URL: https://github.com/kozo2/AHPathbankDbs VignetteBuilder: knitr source.ver: src/contrib/AHPathbankDbs_0.99.5.tar.gz vignettes: vignettes/AHPathbankDbs/inst/doc/creating-PathbankDbs.html vignetteTitles: Provide PathbankDb databases for AnnotationHub hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/AHPathbankDbs/inst/doc/creating-PathbankDbs.R dependencyCount: 66 Package: AHPubMedDbs Version: 1.8.0 Depends: R (>= 4.1.0) Imports: AnnotationHub (>= 2.22.0) Suggests: BiocStyle, knitr, rmarkdown License: Artistic-2.0 MD5sum: a5c32ec183a48fc624a5a09cf2472196 NeedsCompilation: no Title: SQLites, tibbles, and data.tables for AnnotationHub Description: Supplies AnnotationHub with some preprocessed sqlite, tibble, and data.table datasets of PubMed. All the datasets are generated by our Snakemake workflow [pubmed-workflow](https://github.com/rikenbit/pubmed-workflow). For the details, see the README.md of pubmed-workflow. biocViews: AnnotationData, AnnotationHub Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut] Maintainer: Koki Tsuyuzaki VignetteBuilder: knitr BugReports: https://github.com/rikenbit/AHPubMedDbs/issues git_url: https://git.bioconductor.org/packages/AHPubMedDbs git_branch: devel git_last_commit: 831ff12 git_last_commit_date: 2024-03-27 Date/Publication: 2024-04-03 source.ver: src/contrib/AHPubMedDbs_1.8.0.tar.gz vignettes: vignettes/AHPubMedDbs/inst/doc/pubmed.html vignetteTitles: Provide PubMed datasets for AnnotationHub hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/AHPubMedDbs/inst/doc/pubmed.R dependencyCount: 66 Package: AHWikipathwaysDbs Version: 0.99.4 Depends: R (>= 4.1.0) Imports: AnnotationHub (>= 2.23.0) Suggests: BiocStyle, magrittr, dplyr, tibble, knitr, rmarkdown License: Artistic-2.0 MD5sum: ffa90f6d6e8832ae6f4b5bf8b151cd46 NeedsCompilation: no Title: Metabolites linked to WikiPathways pathways (for AnnotationHub) Description: The package provides a comprehensive mapping table of metabolites linked to Wikipathways pathways. The tables include HMDB, KEGG, ChEBI, Drugbank, PubChem compound, ChemSpider, KNApSAcK, and Wikidata IDs plus CAS and InChIKey. The tables are provided for each of the 25 species ("Anopheles gambiae", "Arabidopsis thaliana", "Bacillus subtilis", "Bos taurus", "Caenorhabditis elegans", "Canis familiaris", "Danio rerio", "Drosophila melanogaster", "Equus caballus", "Escherichia coli", "Gallus gallus", "Gibberella zeae", "Homo sapiens", "Hordeum vulgare", "Mus musculus", "Mycobacterium tuberculosis", "Oryza sativa", "Pan troglodytes", "Plasmodium falciparum", "Populus trichocarpa", "Rattus norvegicus", "Saccharomyces cerevisiae", "Solanum lycopersicum", "Sus scrofa", "Zea mays"). These table information can be used for Metabolite Set Enrichment Analysis. biocViews: AnnotationHub, CustomDBSchema, FunctionalAnnotation Author: Kozo Nishida [aut, cre] () Maintainer: Kozo Nishida URL: https://github.com/kozo2/AHWikipathwaysDbs VignetteBuilder: knitr source.ver: src/contrib/AHWikipathwaysDbs_0.99.4.tar.gz vignettes: vignettes/AHWikipathwaysDbs/inst/doc/creating-WikipathwaysDbs.html vignetteTitles: Provide WikipathwaysDb databases for AnnotationHub hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/AHWikipathwaysDbs/inst/doc/creating-WikipathwaysDbs.R dependencyCount: 66 Package: AlphaMissense.v2023.hg19 Version: 3.18.2 Depends: GenomicScores, AnnotationHub Suggests: knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: e8784ad000be637321f432188a5a3f45 NeedsCompilation: no Title: AlphaMissense v2023 Pathogenicity Scores AnnotationHub Resource Metadata for hg19 Description: Store Google DeepMind AlphaMissense v2023 hg19 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for Google DeepMind AlphaMissense v2023 hg19 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources. biocViews: AnnotationData, PackageType, AnnotationHub, Organism, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo organism: Homo sapiens VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/AlphaMissense.v2023.hg19 git_branch: RELEASE_3_18 git_last_commit: f8b2919 git_last_commit_date: 2023-10-24 Date/Publication: 2023-10-25 source.ver: src/contrib/AlphaMissense.v2023.hg19_3.18.2.tar.gz vignettes: vignettes/AlphaMissense.v2023.hg19/inst/doc/AlphaMissense.v2023.hg19.html vignetteTitles: AlphaMissense.v2023.hg19 AnnotationHub Resource Metadata hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/AlphaMissense.v2023.hg19/inst/doc/AlphaMissense.v2023.hg19.R dependencyCount: 82 Package: AlphaMissense.v2023.hg38 Version: 3.18.2 Depends: GenomicScores, AnnotationHub Suggests: knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: bedac9523e18829c5067dec1ebf801d4 NeedsCompilation: no Title: AlphaMissense v2023 Pathogenicity Scores AnnotationHub Resource Metadata for hg38 Description: Store Google DeepMind AlphaMissense v2023 hg38 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for Google DeepMind AlphaMissense v2023 hg38 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources. biocViews: AnnotationData, PackageType, AnnotationHub, Organism, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo organism: Homo sapiens VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/AlphaMissense.v2023.hg38 git_branch: RELEASE_3_18 git_last_commit: 67a154f git_last_commit_date: 2023-10-24 Date/Publication: 2023-10-25 source.ver: src/contrib/AlphaMissense.v2023.hg38_3.18.2.tar.gz vignettes: vignettes/AlphaMissense.v2023.hg38/inst/doc/AlphaMissense.v2023.hg38.html vignetteTitles: AlphaMissense.v2023.hg38 AnnotationHub Resource Metadata hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/AlphaMissense.v2023.hg38/inst/doc/AlphaMissense.v2023.hg38.R dependencyCount: 82 Package: alternativeSplicingEvents.hg19 Version: 1.1.0 Imports: AnnotationHub Suggests: data.frame, dplyr, GenomicRanges, S4Vectors License: MIT + file LICENSE MD5sum: b1acae776c9e9c5d961cf4884cadc58f NeedsCompilation: no Title: Alternative splicing event annotation for Human (hg19) Description: Data frame containing alternative splicing events. The splicing events were compiled from the annotation files used by the alternative splicing quantification tools MISO, VAST-TOOLS, SUPPA and rMATS. biocViews: AnnotationHub Author: Nuno Agostinho Maintainer: Nuno Agostinho URL: https://github.com/nuno-agostinho/alternativeSplicingEvents.hg19 BugReports: https://github.com/nuno-agostinho/alternativeSplicingEvents.hg19/issues git_url: https://git.bioconductor.org/packages/alternativeSplicingEvents.hg19 git_branch: master git_last_commit: 2ec71ae git_last_commit_date: 2021-02-09 Date/Publication: 2021-10-13 source.ver: src/contrib/alternativeSplicingEvents.hg19_1.1.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: TRUE dependencyCount: 66 Package: alternativeSplicingEvents.hg38 Version: 1.1.0 Imports: AnnotationHub Suggests: dplyr, GenomicRanges, S4Vectors License: MIT + file LICENSE MD5sum: 8d49710eebd62fb15a48cab252ff3eca NeedsCompilation: no Title: Alternative splicing event annotation for Human (hg38) Description: Data frame containing alternative splicing events. The splicing events were compiled from the annotation files used by the alternative splicing quantification tools MISO, VAST-TOOLS, SUPPA and rMATS. biocViews: AnnotationHub Author: Nuno Agostinho Maintainer: Nuno Agostinho URL: https://github.com/nuno-agostinho/alternativeSplicingEvents.hg38 BugReports: https://github.com/nuno-agostinho/alternativeSplicingEvents.hg38/issues git_url: https://git.bioconductor.org/packages/alternativeSplicingEvents.hg38 git_branch: master git_last_commit: e05a082 git_last_commit_date: 2021-02-09 Date/Publication: 2021-10-13 source.ver: src/contrib/alternativeSplicingEvents.hg38_1.1.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: TRUE dependencyCount: 66 Package: anopheles.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 947db8d7057679f9f1340dc883cc7e1c NeedsCompilation: no Title: Base Level Annotation databases for anopheles Description: Base annotation databases for anopheles, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Anopheles_gambiae Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Anopheles gambiae source.ver: src/contrib/anopheles.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: arabidopsis.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 1c09bf13aaf74707cae7583fb4cef467 NeedsCompilation: no Title: Base Level Annotation databases for arabidopsis Description: Base annotation databases for arabidopsis, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Arabidopsis_thaliana Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana source.ver: src/contrib/arabidopsis.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ath1121501.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.At.tair.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: c5d937ca9c6bcbb4385fb37a3b14ad15 NeedsCompilation: no Title: Affymetrix Affymetrix ATH1-121501 Array annotation data (chip ath1121501) Description: Affymetrix Affymetrix ATH1-121501 Array annotation data (chip ath1121501) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Arabidopsis_thaliana, ath1121501 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana manufacturer: Affymetrix source.ver: src/contrib/ath1121501.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ath1121501frmavecs dependencyCount: 47 Package: ath1121501cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 8b63798143219b7c1c2666a91a1a2440 NeedsCompilation: no Title: ath1121501cdf Description: A package containing an environment representing the ATH1-121501.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, ath1121501, Arabidopsis_thaliana Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ath1121501cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: XhybCasneuf dependencyCount: 46 Package: ath1121501frmavecs Version: 1.0.0 Depends: R (>= 3.5.0) Suggests: frma, GEOquery, affy, ath1121501.db, BiocStyle, knitr, rmarkdown License: GPL (>= 2) MD5sum: e77c631160730a18037caf3f656e82c5 NeedsCompilation: no Title: Vectors used by frma for microarrays of type ath1121501 Description: Annotation package for the implementation of the frozen Robust Multiarray Analysis procedure for Arabidopsis thaliana. This package was generated on the basis of frmaTools version 1.52.0. biocViews: AnnotationData, AffymetrixChip, FRMA, ath1121501, Arabidopsis_thaliana Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Quentin Riviere VignetteBuilder: knitr source.ver: src/contrib/ath1121501frmavecs_1.0.0.tar.gz vignettes: vignettes/ath1121501frmavecs/inst/doc/ath1121501frmavecs.html vignetteTitles: ath1121501frmavecs hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/ath1121501frmavecs/inst/doc/ath1121501frmavecs.R dependencyCount: 0 Package: ath1121501probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: eeeae5e6550bb472ba3419d71bbd7dfb NeedsCompilation: no Title: Probe sequence data for microarrays of type ath1121501 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was ATH1-121501\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, ath1121501, Arabidopsis_thaliana Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ath1121501probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: barley1cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 16a2ca83f550518756d9fa3273672157 NeedsCompilation: no Title: barley1cdf Description: A package containing an environment representing the Barley1.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, barley1, Hordeum_vulgare Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/barley1cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: barley1probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 80595d8ecf83ba83ea84a722a24ab474 NeedsCompilation: no Title: Probe sequence data for microarrays of type barley1 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Barley1\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, barley1, Hordeum_vulgare Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/barley1probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: BioMartGOGeneSets Version: 0.99.11 Depends: R (>= 4.0.0) Imports: utils, S4Vectors, GenomicRanges Suggests: biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT License: MIT + file LICENSE MD5sum: f96a12703fd2f9c357442a60e5f2c764 NeedsCompilation: no Title: Gene Ontology Gene Sets from BioMart Description: It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package. biocViews: AnnotationData, Organism Author: Zuguang Gu [aut, cre] () Maintainer: Zuguang Gu URL: https://github.com/jokergoo/BioMartGOGeneSets VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/BioMartGOGeneSets git_branch: devel git_last_commit: 25ee53f git_last_commit_date: 2023-09-23 Date/Publication: 2023-09-27 source.ver: src/contrib/BioMartGOGeneSets_0.99.11.tar.gz vignettes: vignettes/BioMartGOGeneSets/inst/doc/biomart.html, vignettes/BioMartGOGeneSets/inst/doc/genesets.html, vignettes/BioMartGOGeneSets/inst/doc/supported_organisms.html, vignettes/BioMartGOGeneSets/inst/doc/version.html vignetteTitles: Retrieve GO Gene Sets from BioMart, Pre-compiled GO Gene Sets, BioMart Gene Ontology Gene Sets Collections, Versions hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/BioMartGOGeneSets/inst/doc/biomart.R, vignettes/BioMartGOGeneSets/inst/doc/genesets.R, vignettes/BioMartGOGeneSets/inst/doc/supported_organisms.R dependencyCount: 24 Package: bovine.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Bt.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: dcc1180e8ac11247f9899f140082647e NeedsCompilation: no Title: Affymetrix Affymetrix Bovine Array annotation data (chip bovine) Description: Affymetrix Affymetrix Bovine Array annotation data (chip bovine) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Bos_taurus, bovine Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Bos taurus manufacturer: Affymetrix source.ver: src/contrib/bovine.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: bovine.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 8a8cd59df5a98057def6c71806cd5f68 NeedsCompilation: no Title: Base Level Annotation databases for bovine Description: Base annotation databases for bovine, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Bos_taurus Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/bovine.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: bovinecdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: e155fc7d5f84ee420d9b250a639af305 NeedsCompilation: no Title: bovinecdf Description: A package containing an environment representing the Bovine.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, bovine, Bos_taurus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/bovinecdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: bovineprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 9f9e25fc8c7a76acf541745b7c09748b NeedsCompilation: no Title: Probe sequence data for microarrays of type bovine Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Bovine\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, bovine, Bos_taurus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/bovineprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: BSgenome.Alyrata.JGI.v1 Version: 1.0.1 Depends: BSgenome (>= 1.58.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 64878499c633de66ccf4c5abc32c0aeb NeedsCompilation: no Title: Arabidopsis lyrata full genome (JGI version V1.0) Description: Arabidopsis lyrata 8x Release [project ID 4002920] as provided by JGI ( snapshot from March 24, 2011) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, Alyrata Author: Jian-Feng Mao and Ya-Long Guo, with acknowledgement to Detlef Weigel Maintainer: Jian-Feng Mao organism: Arabidopsis lyrata source.ver: src/contrib/BSgenome.Alyrata.JGI.v1_1.0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Amellifera.BeeBase.assembly4 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: 77495ee5eba48fe52902c9cc4f9ba7cc NeedsCompilation: no Title: Full genome sequences for Apis mellifera (BeeBase assembly4) Description: iFull genome sequences for Apis mellifera (Honey Bee) as provided by BeeBase (assembly4, Feb. 2008) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Apis mellifera source.ver: src/contrib/BSgenome.Amellifera.BeeBase.assembly4_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Amellifera.NCBI.AmelHAv3.1 Version: 1.5.0 Depends: R (>= 4.0.0), BSgenome (>= 1.58.0) Imports: BSgenome License: Artistic-2.0 MD5sum: b119087dfe54805c90cb6bf901e8237e NeedsCompilation: no Title: Full genome sequences for Apis mellifera (Amel_HAv3.1) Description: Full genome sequences for Apis mellifera as provided by NCBI (assembly Amel_HAv3.1, assembly accession GCF_003254395.2) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Apis mellifera source.ver: src/contrib/BSgenome.Amellifera.NCBI.AmelHAv3.1_1.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Amellifera.UCSC.apiMel2 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: 436ddf54868906e7d1135369d41a2ffe NeedsCompilation: no Title: Full genome sequences for Apis mellifera (UCSC version apiMel2) Description: Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Apis mellifera source.ver: src/contrib/BSgenome.Amellifera.UCSC.apiMel2_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Amellifera.UCSC.apiMel2.masked importsMe: BSgenome.Amellifera.UCSC.apiMel2.masked dependencyCount: 60 Package: BSgenome.Amellifera.UCSC.apiMel2.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Amellifera.UCSC.apiMel2 Imports: BSgenome, BSgenome.Amellifera.UCSC.apiMel2 License: Artistic-2.0 MD5sum: e7a7ff8cfce8e239b22116855456f23d NeedsCompilation: no Title: Full masked genome sequences for Apis mellifera (UCSC version apiMel2) Description: Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Amellifera.UCSC.apiMel2, except that each of them has the 3 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), and (3) the mask of repeats from RepeatMasker (RM mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Apis mellifera source.ver: src/contrib/BSgenome.Amellifera.UCSC.apiMel2.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Aofficinalis.NCBI.V1 Version: 1.0.0 Depends: BSgenome (>= 1.42.0) Imports: BSgenome License: GPL-3 MD5sum: 3f8fd13e74eee63895a5ef528004b60b NeedsCompilation: no Title: Asparagus officinalis (Garden asparagus) full genome (NCBI version Aspof.V1) Description: Full genome sequences for Asparagus officinalis (Garden asparagus) as provided by NCBI (Aspof.V1, Feb. 2017) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Asparagus_officinalis Author: Jose V. Die Maintainer: Jose V. Die organism: Asparagus officinalis source.ver: src/contrib/BSgenome.Aofficinalis.NCBI.V1_1.0.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Athaliana.TAIR.04232008 Version: 1.3.1000 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: 6b8a31a228dbcf4468974f5ec1d98467 NeedsCompilation: no Title: Full genome sequences for Arabidopsis thaliana (TAIR version from April 23, 2008) Description: Full genome sequences for Arabidopsis thaliana as provided by TAIR (snapshot from April 23, 2008) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Arabidopsis_thaliana Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana source.ver: src/contrib/BSgenome.Athaliana.TAIR.04232008_1.3.1000.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Athaliana.TAIR.TAIR9 Version: 1.3.1000 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: 8c6709a5f544616d59f4d39aac5787a7 NeedsCompilation: no Title: Full genome sequences for Arabidopsis thaliana (TAIR9) Description: Full genome sequences for Arabidopsis thaliana as provided by TAIR (TAIR9 Genome Release) and stored in Biostrings objects. Note that TAIR10 is an "annotation release" based on the same genome assembly as TAIR9. biocViews: AnnotationData, Genetics, BSgenome, Arabidopsis_thaliana Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana source.ver: src/contrib/BSgenome.Athaliana.TAIR.TAIR9_1.3.1000.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Btaurus.UCSC.bosTau3 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: fe6c4d5853f91c3db3e716ddbc773580 NeedsCompilation: no Title: Full genome sequences for Bos taurus (UCSC version bosTau3) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau3_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Btaurus.UCSC.bosTau3.masked importsMe: BSgenome.Btaurus.UCSC.bosTau3.masked dependencyCount: 60 Package: BSgenome.Btaurus.UCSC.bosTau3.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Btaurus.UCSC.bosTau3 Imports: BSgenome, BSgenome.Btaurus.UCSC.bosTau3 License: Artistic-2.0 MD5sum: 50f7da5907cbe0d08183dc7161a8ca56 NeedsCompilation: no Title: Full masked genome sequences for Bos taurus (UCSC version bosTau3) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau3.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Btaurus.UCSC.bosTau4 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 162cd253c719e347df5748ebb407a191 NeedsCompilation: no Title: Full genome sequences for Bos taurus (UCSC version bosTau4) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau4_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Btaurus.UCSC.bosTau4.masked importsMe: BSgenome.Btaurus.UCSC.bosTau4.masked dependencyCount: 60 Package: BSgenome.Btaurus.UCSC.bosTau4.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Btaurus.UCSC.bosTau4 Imports: BSgenome, BSgenome.Btaurus.UCSC.bosTau4 License: Artistic-2.0 MD5sum: 7c5294349c7061adfb3948bc5659afeb NeedsCompilation: no Title: Full masked genome sequences for Bos taurus (UCSC version bosTau4) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau4, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau4.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Btaurus.UCSC.bosTau6 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: b22391e0678fc3743daa4b77ecc55f66 NeedsCompilation: no Title: Full genome sequences for Bos taurus (UCSC version bosTau6) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau6_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Btaurus.UCSC.bosTau6.masked importsMe: BSgenome.Btaurus.UCSC.bosTau6.masked dependencyCount: 60 Package: BSgenome.Btaurus.UCSC.bosTau6.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Btaurus.UCSC.bosTau6 Imports: BSgenome, BSgenome.Btaurus.UCSC.bosTau6 License: Artistic-2.0 MD5sum: a176de6b1b91854d47e783b8249dbf58 NeedsCompilation: no Title: Full masked genome sequences for Bos taurus (UCSC version bosTau6) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau6, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau6.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: CNVRanger dependencyCount: 61 Package: BSgenome.Btaurus.UCSC.bosTau8 Version: 1.4.2 Depends: BSgenome (>= 1.35.20) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 61ababa7b2b5360fceeb06f0bf49b208 NeedsCompilation: no Title: Full genome sequences for Bos taurus (UCSC version bosTau8) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau8, Jun. 2014) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau8_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Btaurus.UCSC.bosTau9 Version: 1.4.2 Depends: BSgenome (>= 1.55.1) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 9b3343725d85c093999413d91218079d NeedsCompilation: no Title: Full genome sequences for Bos taurus (UCSC version bosTau9) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau9, Apr. 2018) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau9_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Btaurus.UCSC.bosTau9.masked importsMe: BSgenome.Btaurus.UCSC.bosTau9.masked dependencyCount: 60 Package: BSgenome.Btaurus.UCSC.bosTau9.masked Version: 1.4.4 Depends: R (>= 3.5.0), BSgenome (>= 1.62.0), BSgenome.Btaurus.UCSC.bosTau9 Imports: BSgenome, BSgenome.Btaurus.UCSC.bosTau9 License: Artistic-2.0 MD5sum: c96bd95c3b791d712aa5cb8c96f9c937 NeedsCompilation: no Title: Full masked genome sequences for Bos taurus (UCSC version bosTau9) Description: Full genome sequences for Bos taurus (Cow) as provided by UCSC (genome bosTau9) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Bos_taurus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/BSgenome.Btaurus.UCSC.bosTau9.masked_1.4.4.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Carietinum.NCBI.v1 Version: 1.0.0 Depends: BSgenome (>= 1.42.0) Imports: BSgenome License: GPL-3 MD5sum: eef018ecce6d32852aa18ac39cf377c6 NeedsCompilation: no Title: Cicer arietinum (Chickpea) full genome (NCBI version ASM33114v1) Description: Full genome sequences for Cicer arietinum (Chickpea) as provided by NCBI (ASM33114v1, Jan. 2013) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Cicer_arietinum Author: Jose V. Die Maintainer: Jose V. Die organism: Cicer arietinum source.ver: src/contrib/BSgenome.Carietinum.NCBI.v1_1.0.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Celegans.UCSC.ce10 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 98a8ca836d6db23e46674552669d7942 NeedsCompilation: no Title: Full genome sequences for Caenorhabditis elegans (UCSC version ce10) Description: Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce10, Oct. 2010) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Caenorhabditis_elegans Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/BSgenome.Celegans.UCSC.ce10_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ChIPpeakAnno, triplex dependencyCount: 60 Package: BSgenome.Celegans.UCSC.ce11 Version: 1.4.2 Depends: BSgenome (>= 1.36.0) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: b80e24149a0c6ed323d0c9a6d112ef52 NeedsCompilation: no Title: Full genome sequences for Caenorhabditis elegans (UCSC version ce11) Description: Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce11, Feb. 2013) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Caenorhabditis_elegans Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/BSgenome.Celegans.UCSC.ce11_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GenomicFeatures, periodicDNA dependencyCount: 60 Package: BSgenome.Celegans.UCSC.ce2 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: b2bf7eec2b07685cf9dcdf42840db208 NeedsCompilation: no Title: Full genome sequences for Caenorhabditis elegans (UCSC version ce2) Description: Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce2, Mar. 2004) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Caenorhabditis_elegans Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/BSgenome.Celegans.UCSC.ce2_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: REDseq suggestsMe: Biostrings, BSgenome, BSgenomeForge, GenomeInfoDb, IRanges dependencyCount: 60 Package: BSgenome.Celegans.UCSC.ce6 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: TxDb.Celegans.UCSC.ce6.ensGene License: Artistic-2.0 MD5sum: cb86ff861d8f660c2abd8fc1907d84a6 NeedsCompilation: no Title: Full genome sequences for Caenorhabditis elegans (UCSC version ce6) Description: Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Caenorhabditis_elegans Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/BSgenome.Celegans.UCSC.ce6_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Cfamiliaris.UCSC.canFam2 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: b98f5289ed5d362cd815db9352598634 NeedsCompilation: no Title: Full genome sequences for Canis lupus familiaris (UCSC version canFam2) Description: Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Canis_familiaris Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Canis lupus familiaris source.ver: src/contrib/BSgenome.Cfamiliaris.UCSC.canFam2_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Cfamiliaris.UCSC.canFam2.masked importsMe: BSgenome.Cfamiliaris.UCSC.canFam2.masked dependencyCount: 60 Package: BSgenome.Cfamiliaris.UCSC.canFam2.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Cfamiliaris.UCSC.canFam2 Imports: BSgenome, BSgenome.Cfamiliaris.UCSC.canFam2 License: Artistic-2.0 MD5sum: 6f921533bb83f83f43b8d227b00a48cb NeedsCompilation: no Title: Full masked genome sequences for Canis lupus familiaris (UCSC version canFam2) Description: Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Canis_familiaris Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Canis lupus familiaris source.ver: src/contrib/BSgenome.Cfamiliaris.UCSC.canFam2.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Cfamiliaris.UCSC.canFam3 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: efcdc531042be86f99a734cd69c0688c NeedsCompilation: no Title: Full genome sequences for Canis lupus familiaris (UCSC version canFam3) Description: Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Canis_familiaris Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Canis lupus familiaris source.ver: src/contrib/BSgenome.Cfamiliaris.UCSC.canFam3_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Cfamiliaris.UCSC.canFam3.masked importsMe: BSgenome.Cfamiliaris.UCSC.canFam3.masked dependencyCount: 60 Package: BSgenome.Cfamiliaris.UCSC.canFam3.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Cfamiliaris.UCSC.canFam3 Imports: BSgenome, BSgenome.Cfamiliaris.UCSC.canFam3 License: Artistic-2.0 MD5sum: 8e2246f51fc967dc2ed748cf967a7649 NeedsCompilation: no Title: Full masked genome sequences for Canis lupus familiaris (UCSC version canFam3) Description: Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Canis_familiaris Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Canis lupus familiaris source.ver: src/contrib/BSgenome.Cfamiliaris.UCSC.canFam3.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Cjacchus.UCSC.calJac3 Version: 1.4.2 Depends: BSgenome (>= 1.50.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 41f927aa0d6ffbdaa6ad93c9135409e6 NeedsCompilation: no Title: Full genome sequences for Callithrix jacchus (UCSC version calJac3) Description: Full genome sequences for Callithrix jacchus (Marmoset) as provided by UCSC (calJac3, Mar. 2009) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Callithrix_jacchus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Callithrix jacchus source.ver: src/contrib/BSgenome.Cjacchus.UCSC.calJac3_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Cjacchus.UCSC.calJac4 Version: 1.5.0 Depends: R (>= 3.5.0), BSgenome (>= 1.62.0) Imports: BSgenome License: Artistic-2.0 MD5sum: b11d16ac2cfa81e04af74e2049e52670 NeedsCompilation: no Title: Full genome sequences for Callithrix jacchus (UCSC version calJac4) Description: Full genome sequences for Callithrix jacchus (Marmoset) as provided by UCSC (calJac4, May 2020) and wrapped in a BSgenome object. biocViews: AnnotationData, Genetics, BSgenome, Callithrix_jacchus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Callithrix jacchus source.ver: src/contrib/BSgenome.Cjacchus.UCSC.calJac4_1.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1 Version: 1.0.0 Depends: R (>= 3.5.0), BSgenome (>= 1.62.0) Imports: BSgenome License: Artistic-2.0 MD5sum: ea536a15bd932af794f672d9b204c141 NeedsCompilation: no Title: Full Genome Sequence for Cryptococcus neoformans var. grubii KN99 (ASM221672v1) Description: Full genome sequences for Cryptococcus neoformans var. grubii KN99 (assembly ASM221672v1 assembly accession GCA_002216725.1). biocViews: AnnotationData, Genetics, BSgenome, Cryptococcus_neoformans_var_grubii_KN99 Author: The Bioconductor Dev Team Maintainer: Chase Mateusiak organism: Cryptococcus neoformans var. grubii KN99 source.ver: src/contrib/BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1_1.0.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Creinhardtii.JGI.v5.6 Version: 1.5.0 Depends: R (>= 3.5.0), BSgenome (>= 1.58.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 2bd1be53d19249ac14ad7f39dc00af0e NeedsCompilation: no Title: Full genome sequences for Chlamydomonas reinhardtii (v5.6) Description: Full genome sequences for Chlamydomonas reinhardtii (v5.6) as provided by JGI and stored in Biostrings objects. The data in this package is public. See 'citation("BSgenome.Creinhardtii.JGI.v5.6")' for how to cite in publications. biocViews: AnnotationData, Genetics, BSgenome, Chlamydomonas_reinhardtii Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Chlamydomonas reinhardtii source.ver: src/contrib/BSgenome.Creinhardtii.JGI.v5.6_1.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Dmelanogaster.UCSC.dm2 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: ebc88df5595fc7aad588b8f3f7de4784 NeedsCompilation: no Title: Full genome sequences for Drosophila melanogaster (UCSC version dm2) Description: Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/BSgenome.Dmelanogaster.UCSC.dm2_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Dmelanogaster.UCSC.dm2.masked importsMe: BSgenome.Dmelanogaster.UCSC.dm2.masked dependencyCount: 60 Package: BSgenome.Dmelanogaster.UCSC.dm2.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Dmelanogaster.UCSC.dm2 Imports: BSgenome, BSgenome.Dmelanogaster.UCSC.dm2 License: Artistic-2.0 MD5sum: ae7ca3053e97a0d6bd20bc2b9635ecce NeedsCompilation: no Title: Full masked genome sequences for Drosophila melanogaster (UCSC version dm2) Description: Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/BSgenome.Dmelanogaster.UCSC.dm2.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Dmelanogaster.UCSC.dm3 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: TxDb.Dmelanogaster.UCSC.dm3.ensGene License: Artistic-2.0 MD5sum: b7ceebf7bfee766596f602f9e808d069 NeedsCompilation: no Title: Full genome sequences for Drosophila melanogaster (UCSC version dm3) Description: Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/BSgenome.Dmelanogaster.UCSC.dm3_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Dmelanogaster.UCSC.dm3.masked importsMe: BSgenome.Dmelanogaster.UCSC.dm3.masked suggestsMe: Biostrings, CAGEr, easyRNASeq, GenomicAlignments, GenomicFeatures, gmapR, memes, PWMEnrich dependencyCount: 60 Package: BSgenome.Dmelanogaster.UCSC.dm3.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Dmelanogaster.UCSC.dm3 Imports: BSgenome, BSgenome.Dmelanogaster.UCSC.dm3 License: Artistic-2.0 MD5sum: 592e7ec451d126b2d314ab6c75d86830 NeedsCompilation: no Title: Full masked genome sequences for Drosophila melanogaster (UCSC version dm3) Description: Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/BSgenome.Dmelanogaster.UCSC.dm3.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Dmelanogaster.UCSC.dm6 Version: 1.4.1 Depends: BSgenome (>= 1.35.10) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: f9d6e406b7893a17c08edd4521c2802f NeedsCompilation: no Title: Full genome sequences for Drosophila melanogaster (UCSC version dm6) Description: Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm6, Aug. 2014) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Drosophila_melanogaster Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/BSgenome.Dmelanogaster.UCSC.dm6_1.4.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: Damsel, GRaNIE, memes, periodicDNA dependencyCount: 60 Package: BSgenome.Drerio.UCSC.danRer10 Version: 1.4.2 Depends: BSgenome (>= 1.36.0) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: b8dbcc8a338a021ed35656b27b3dd4c0 NeedsCompilation: no Title: Full genome sequences for Danio rerio (UCSC version danRer10) Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer10, Sep. 2014) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer10_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ATACseqTFEA, CNEr, enhancerHomologSearch, periodicDNA, ribosomeProfilingQC dependencyCount: 60 Package: BSgenome.Drerio.UCSC.danRer11 Version: 1.4.2 Depends: BSgenome (>= 1.55.1) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: cd586da56ca88ccebb85804f992ba204 NeedsCompilation: no Title: Full genome sequences for Danio rerio (UCSC version danRer11) Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer11, May 2017) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer11_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Drerio.UCSC.danRer5 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: b1fee4bcc0d9cebb2bbdec5cb851f00d NeedsCompilation: no Title: Full genome sequences for Danio rerio (UCSC version danRer5) Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer5_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Drerio.UCSC.danRer5.masked importsMe: BSgenome.Drerio.UCSC.danRer5.masked dependencyCount: 60 Package: BSgenome.Drerio.UCSC.danRer5.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Drerio.UCSC.danRer5 Imports: BSgenome, BSgenome.Drerio.UCSC.danRer5 License: Artistic-2.0 MD5sum: 8f0623bcbe1743754a56c55599b535f3 NeedsCompilation: no Title: Full masked genome sequences for Danio rerio (UCSC version danRer5) Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer5.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Drerio.UCSC.danRer6 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 537d37d29d97ae0c31d77decc67b25b0 NeedsCompilation: no Title: Full genome sequences for Danio rerio (UCSC version danRer6) Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer6_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Drerio.UCSC.danRer6.masked importsMe: BSgenome.Drerio.UCSC.danRer6.masked dependencyCount: 60 Package: BSgenome.Drerio.UCSC.danRer6.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Drerio.UCSC.danRer6 Imports: BSgenome, BSgenome.Drerio.UCSC.danRer6 License: Artistic-2.0 MD5sum: 71c9b05c27b8d2e05735e6494a8f17ba NeedsCompilation: no Title: Full masked genome sequences for Danio rerio (UCSC version danRer6) Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer6, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer6.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Drerio.UCSC.danRer7 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 766b407a46f20d69a143eab0809eb10a NeedsCompilation: no Title: Full genome sequences for Danio rerio (UCSC version danRer7) Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer7_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: cleanUpdTSeq, BSgenome.Drerio.UCSC.danRer7.masked importsMe: BSgenome.Drerio.UCSC.danRer7.masked suggestsMe: CAGEr, ChIPpeakAnno, heatmaps, motifbreakR, seqPattern dependencyCount: 60 Package: BSgenome.Drerio.UCSC.danRer7.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Drerio.UCSC.danRer7 Imports: BSgenome, BSgenome.Drerio.UCSC.danRer7 License: Artistic-2.0 MD5sum: 5d68af24477d006ed22e7342ff97ac16 NeedsCompilation: no Title: Full masked genome sequences for Danio rerio (UCSC version danRer7) Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer7, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/BSgenome.Drerio.UCSC.danRer7.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Dvirilis.Ensembl.dvircaf1 Version: 1.4.3 Depends: BSgenome (>= 1.54.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 6a6a6dc7b2d68a741c85525045a67890 NeedsCompilation: no Title: Full genome sequences for Drosophila virilis (assembly dvir_caf1) Description: Full genome sequences for Drosophila virilis (assembly dvir_caf1, GenBank assembly accession GCA_000005245.1) as provided by Ensembl and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Drosophila_virilis Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Drosophila virilis source.ver: src/contrib/BSgenome.Dvirilis.Ensembl.dvircaf1_1.4.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Ecoli.NCBI.20080805 Version: 1.3.1000 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: c653e9cbee3faeb6fd5759b7575f234d NeedsCompilation: no Title: Escherichia coli full genomes Description: Escherichia coli full genomes for several strains as provided by NCBI on 2008/08/05 and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Escherichia_coli Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Escherichia coli source.ver: src/contrib/BSgenome.Ecoli.NCBI.20080805_1.3.1000.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: Basic4Cseq suggestsMe: ChIPpeakAnno, diffHic, Motif2Site, ramwas dependencyCount: 60 Package: BSgenome.Gaculeatus.UCSC.gasAcu1 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 412aa0570d9c556861b7bb9a5bbc2007 NeedsCompilation: no Title: Full genome sequences for Gasterosteus aculeatus (UCSC version gasAcu1) Description: Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Gasterosteus_aculeatus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Gasterosteus aculeatus source.ver: src/contrib/BSgenome.Gaculeatus.UCSC.gasAcu1_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Gaculeatus.UCSC.gasAcu1.masked importsMe: BSgenome.Gaculeatus.UCSC.gasAcu1.masked dependencyCount: 60 Package: BSgenome.Gaculeatus.UCSC.gasAcu1.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Gaculeatus.UCSC.gasAcu1 Imports: BSgenome, BSgenome.Gaculeatus.UCSC.gasAcu1 License: Artistic-2.0 MD5sum: 9d9b9e70f4f4624ee4a2b09a59d44510 NeedsCompilation: no Title: Full masked genome sequences for Gasterosteus aculeatus (UCSC version gasAcu1) Description: Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Gaculeatus.UCSC.gasAcu1, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Gasterosteus_aculeatus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Gasterosteus aculeatus source.ver: src/contrib/BSgenome.Gaculeatus.UCSC.gasAcu1.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Ggallus.UCSC.galGal3 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: a463e5ccfc8c6d2c62a6ade0da65dbc4 NeedsCompilation: no Title: Full genome sequences for Gallus gallus (UCSC version galGal3) Description: Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal3, May 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal3_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Ggallus.UCSC.galGal3.masked importsMe: BSgenome.Ggallus.UCSC.galGal3.masked suggestsMe: CNEr dependencyCount: 60 Package: BSgenome.Ggallus.UCSC.galGal3.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Ggallus.UCSC.galGal3 Imports: BSgenome, BSgenome.Ggallus.UCSC.galGal3 License: Artistic-2.0 MD5sum: b3224e3a2b15de379c068e61cedfefa6 NeedsCompilation: no Title: Full masked genome sequences for Gallus gallus (UCSC version galGal3) Description: Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal3, May 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ggallus.UCSC.galGal3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal3.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Ggallus.UCSC.galGal4 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: c2cb4bfc39db93c060e78d8d12542c11 NeedsCompilation: no Title: Full genome sequences for Gallus gallus (UCSC version galGal4) Description: Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal4_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Ggallus.UCSC.galGal4.masked importsMe: BSgenome.Ggallus.UCSC.galGal4.masked dependencyCount: 60 Package: BSgenome.Ggallus.UCSC.galGal4.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Ggallus.UCSC.galGal4 Imports: BSgenome, BSgenome.Ggallus.UCSC.galGal4 License: Artistic-2.0 MD5sum: 0166121ebd8d0b6a4d24d67e175cfe81 NeedsCompilation: no Title: Full masked genome sequences for Gallus gallus (UCSC version galGal4) Description: Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ggallus.UCSC.galGal4, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal4.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Ggallus.UCSC.galGal5 Version: 1.4.2 Depends: BSgenome (>= 1.40.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 93b42354404edd848b21ea6781ca135c NeedsCompilation: no Title: Full genome sequences for Gallus gallus (UCSC version galGal5) Description: Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal5, Dec. 2015) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal5_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Ggallus.UCSC.galGal6 Version: 1.4.2 Depends: BSgenome (>= 1.55.1) Imports: BSgenome License: Artistic-2.0 MD5sum: 25ef08a5430fb337dbf752ca3378ea3e NeedsCompilation: no Title: Full genome sequences for Gallus gallus (UCSC version galGal6) Description: Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal6, Mar. 2018) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Gallus_gallus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/BSgenome.Ggallus.UCSC.galGal6_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Gmax.NCBI.Gmv40 Version: 4.0 Depends: R (>= 3.5.0), BSgenome (>= 1.63.4) Imports: BSgenome License: Creative Commons Legal Code + file LICENSE MD5sum: 421c045b993b2cfbc2b08c8103835c56 NeedsCompilation: no Title: Full genome sequences for Glycine max (Gmv40) Description: Full genome sequences for Glycine max as provided by NCBI (assembly Glycine_max_v4.0, assembly accession GCF_000004515.5) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Glycine_max Author: Deisiany Ferreira Neres Maintainer: Deisiany Ferreira Neres , Clay Wright organism: Glycine max source.ver: src/contrib/BSgenome.Gmax.NCBI.Gmv40_4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: TRUE dependencyCount: 60 Package: BSgenome.Hsapiens.1000genomes.hs37d5 Version: 0.99.1 Depends: BSgenome (>= 1.34.0) License: Artistic-2.0 MD5sum: 164e1692d38fefa499c2c8ac5fc22793 NeedsCompilation: no Title: 1000genomes Reference Genome Sequence (hs37d5) Description: 1000genomes Phase2 Reference Genome Sequence (hs37d5), based on NCBI GRCh37. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: Julian Gehring Maintainer: Julian Gehring organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.1000genomes.hs37d5_0.99.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: RESOLVE suggestsMe: motifbreakR, MungeSumstats, SomaticSignatures, SparseSignatures, VariantFiltering, ICAMS dependencyCount: 60 Package: BSgenome.Hsapiens.NCBI.GRCh38 Version: 1.3.1000 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: 733d324b34d34d7da8c4bf38459f4fae NeedsCompilation: no Title: Full genome sequences for Homo sapiens (GRCh38) Description: Full genome sequences for Homo sapiens (Human) as provided by NCBI (GRCh38, 2013-12-17) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.NCBI.GRCh38_1.3.1000.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: cfDNAPro suggestsMe: bambu, BSgenome, ensembldb, GenomeInfoDb, h5vc, motifbreakR, MungeSumstats, raer, scmeth, NanoporeRNASeq, MARVEL dependencyCount: 60 Package: BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 Version: 1.5.0 Depends: R (>= 3.5.0), BSgenome (>= 1.62.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 22a99174e1e17718e0b4f8b66f32fd9b NeedsCompilation: no Title: T2T-CHM13v2.0 assembly (Homo sapiens) wrapped in a BSgenome object Description: The T2T-CHM13v2.0 assembly (accession GCA_009914755.4), as submitted to NCBI by the T2T Consortium, and wrapped in a BSgenome object. Companion paper: "The complete sequence of a human genome" by Nurk S, Koren S, Rhie A, Rautiainen M, et al. Science, 2022. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0_1.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Hsapiens.UCSC.hg17 Version: 1.3.1001 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 9568b8979caae68531475136ed71316d NeedsCompilation: no Title: Full genome sequences for Homo sapiens (UCSC version hg17) Description: Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg17, May 2004) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens PackageStatus: Deprecated source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg17_1.3.1001.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Hsapiens.UCSC.hg17.masked importsMe: BSgenome.Hsapiens.UCSC.hg17.masked dependencyCount: 60 Package: BSgenome.Hsapiens.UCSC.hg17.masked Version: 1.3.999 Depends: BSgenome (>= 1.31.8), BSgenome.Hsapiens.UCSC.hg17 Imports: BSgenome, BSgenome.Hsapiens.UCSC.hg17 License: Artistic-2.0 MD5sum: e3257cb973663f54841fd62a643ecaa7 NeedsCompilation: no Title: Full masked genome sequences for Homo sapiens (UCSC version hg17) Description: Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg17, May 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg17, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens PackageStatus: Deprecated source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg17.masked_1.3.999.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Hsapiens.UCSC.hg18 Version: 1.3.1000 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: TxDb.Hsapiens.UCSC.hg18.knownGene License: Artistic-2.0 MD5sum: 51bb2e1ed4009860bb21aaac32fffd9c NeedsCompilation: no Title: Full genome sequences for Homo sapiens (UCSC version hg18) Description: Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg18_1.3.1000.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Hsapiens.UCSC.hg18.masked importsMe: VanillaICE, BSgenome.Hsapiens.UCSC.hg18.masked suggestsMe: Biostrings, CAGEr, HiTC, MEDME, methylPipe, MethylSeekR, MinimumDistance, oligo, Repitools, ListerEtAlBSseq dependencyCount: 60 Package: BSgenome.Hsapiens.UCSC.hg18.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Hsapiens.UCSC.hg18 Imports: BSgenome, BSgenome.Hsapiens.UCSC.hg18 License: Artistic-2.0 MD5sum: e6a31e3cba34ce5e0eb6f76d2c19870c NeedsCompilation: no Title: Full masked genome sequences for Homo sapiens (UCSC version hg18) Description: Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg18, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg18.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: r3Cseq, gkmSVM dependencyCount: 61 Package: BSgenome.Hsapiens.UCSC.hg19 Version: 1.4.3 Depends: BSgenome (>= 1.54.0) Imports: BSgenome License: Artistic-2.0 MD5sum: bb3f864ab32450d895816b45f6105f4f NeedsCompilation: no Title: Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13) Description: Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: CODEX, SCOPE, traseR, BSgenome.Hsapiens.UCSC.hg19.masked, annotation, sequencing, variants importsMe: appreci8R, cfDNAPro, circRNAprofiler, decompTumor2Sig, epiregulon, HiLDA, katdetectr, MADSEQ, musicatk, RareVariantVis, RCAS, YAPSA, BSgenome.Hsapiens.UCSC.hg19.masked, TCGAWorkflow suggestsMe: AneuFinder, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, bnbc, CAGEr, ChIPpeakAnno, chromVAR, CNEr, CNVfilteR, CRISPRseek, customProDB, DAMEfinder, DNAshapeR, EpiCompare, esATAC, gcapc, GenomicAlignments, GenomicFeatures, GenVisR, ggbio, gmapR, GRaNIE, GreyListChIP, GUIDEseq, Gviz, h5vc, HiCDCPlus, InPAS, karyoploteR, maftools, MEDIPS, MesKit, MethReg, methrix, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, MotifPeeker, motifTestR, MutationalPatterns, ORFik, OrganismDbi, pageRank, pipeFrame, plotgardener, plyranges, ProteoDisco, qsea, R453Plus1Toolbox, REMP, rGADEM, RiboCrypt, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SigsPack, supersigs, svaNUMT, UMI4Cats, VariantAnnotation, wavClusteR, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, MicroSEC, MOCHA, sigminer dependencyCount: 60 Package: BSgenome.Hsapiens.UCSC.hg19.masked Version: 1.3.993 Depends: R (>= 3.5.0), BSgenome (>= 1.54.0), BSgenome.Hsapiens.UCSC.hg19 Imports: BSgenome, BSgenome.Hsapiens.UCSC.hg19 License: Artistic-2.0 MD5sum: 4424e1bda9cc005d75f5f05ba4a50c77 NeedsCompilation: no Title: Full masked genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13) Description: Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg19, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg19.masked_1.3.993.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: CNVfilteR, CopyNumberPlots, karyoploteR, motifbreakR, r3Cseq, regioneR, RSVSim, gkmSVM dependencyCount: 61 Package: BSgenome.Hsapiens.UCSC.hg38 Version: 1.4.5 Depends: R (>= 4.2.0), GenomeInfoDb (>= 1.34.9), BSgenome (>= 1.66.2) License: Artistic-2.0 MD5sum: b2e670c27944eed77fbe9a9b55be40d2 NeedsCompilation: no Title: Full genomic sequences for Homo sapiens (UCSC genome hg38) Description: Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are stored in DNAString objects. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Hsapiens.UCSC.hg38.masked importsMe: branchpointer, cfDNAPro, epiregulon, katdetectr, musicatk, ORFhunteR, primirTSS, OHCA, revert suggestsMe: BSgenome, bsseq, BUSpaRse, ChIPpeakAnno, circRNAprofiler, CleanUpRNAseq, CNEr, crisprBowtie, crisprBwa, crisprDesign, crisprShiny, crisprViz, DegCre, eisaR, enhancerHomologSearch, EpiCompare, EpiTxDb, GenomicRanges, GenomicScores, GenVisR, GRaNIE, GUIDEseq, HiCDCPlus, MethReg, MIRit, Motif2Site, motifbreakR, MotifPeeker, multicrispr, nullranges, periodicDNA, pqsfinder, RAIDS, REMP, scanMiRApp, SCOPE, signeR, supersigs, TAPseq, transmogR, Ularcirc, XNAString, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, ICAMS, MicroSEC, simMP dependencyCount: 60 Package: BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major Version: 0.0.9999 Depends: R (>= 3.5.0), BSgenome (>= 1.56.0) Suggests: BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, testthat License: CC BY-NC-ND 4.0 MD5sum: c59f66e52d4982942bea2254223d58df NeedsCompilation: no Title: Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected major alleles (dbSNP151) Description: Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with major allele injected from dbSNP151, and stored in Biostrings objects. Only single nucleotide variants (SNVs) were considered. At each SNV, the most frequent allele was chosen at the major allele to be injected into the reference genome. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: Jean-Philippe Fortin Maintainer: Jean-Philippe Fortin organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major_0.0.9999.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor dependencyCount: 60 Package: BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor Version: 0.0.9999 Depends: R (>= 3.5.0), BSgenome (>= 1.56.0) Suggests: BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, testthat License: CC BY-NC-ND 4.0 MD5sum: 2cc3a612a2064624735d6a92910be7f3 NeedsCompilation: no Title: Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected minor alleles (dbSNP151) Description: Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Only common single nucleotide variants (SNVs) with at least one alternate allele with frequency greater than 0.01 were considered. For SNVs with more than 1 alternate allele, the most frequent allele was chosen as the minor allele to be injected into the reference genome. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: Jean-Philippe Fortin Maintainer: Jean-Philippe Fortin organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor_0.0.9999.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major dependencyCount: 60 Package: BSgenome.Hsapiens.UCSC.hg38.masked Version: 1.4.5 Depends: R (>= 4.2.0), GenomeInfoDb (>= 1.34.9), BSgenome (>= 1.66.2), BSgenome.Hsapiens.UCSC.hg38 License: Artistic-2.0 MD5sum: 7570dd1b4f013b3c6acecd68602180b4 NeedsCompilation: no Title: Full masked genomic sequences for Homo sapiens (UCSC version hg38) Description: Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are the same as in BSgenome.Hsapiens.UCSC.hg38, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. The sequences are stored in MaskedDNAString objects. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hg38.masked_1.4.5.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: BSgenome, motifbreakR, podkat, spiky dependencyCount: 61 Package: BSgenome.Hsapiens.UCSC.hs1 Version: 1.4.4 Depends: R (>= 4.2.0), BSgenome (>= 1.66.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 5812c5670f51a5c58a9da9e042e7e440 NeedsCompilation: no Title: Full genomic sequences for UCSC genome hs1 (Homo sapiens) Description: Full genomic sequences for UCSC genome hs1 (the hs1 genome is based on assembly T2T-CHM13v2.0, with GenBank assembly accession GCA_009914755.4). The sequences are stored in DNAString objects. biocViews: AnnotationData, Genetics, BSgenome, Homo_sapiens Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/BSgenome.Hsapiens.UCSC.hs1_1.4.4.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Mdomestica.UCSC.monDom5 Version: 1.4.2 Depends: BSgenome (>= 1.50.0) Imports: BSgenome License: Artistic-2.0 MD5sum: ff940f7446a275962f69a6f4cb84724c NeedsCompilation: no Title: Full genome sequences for Monodelphis domestica (UCSC version monDom5) Description: Full genome sequences for Monodelphis domestica (Opossum) as provided by UCSC (monDom5, Oct. 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Monodelphis_domestica Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Monodelphis domestica source.ver: src/contrib/BSgenome.Mdomestica.UCSC.monDom5_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Mfascicularis.NCBI.5.0 Version: 1.4.2 Depends: BSgenome (>= 1.36.0) Imports: BSgenome License: Artistic-2.0 MD5sum: dba6ade39dc6b4f6d06f488141b5550b NeedsCompilation: no Title: Full genome sequences for Macaca fascicularis (Macaca_fascicularis_5.0) Description: Full genome sequences for Macaca fascicularis (long-tailed macaque) as provided by NCBI (Macaca_fascicularis_5.0, 2013-06-12) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Macaca_fascicularis Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Macaca fascicularis source.ver: src/contrib/BSgenome.Mfascicularis.NCBI.5.0_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Mfascicularis.NCBI.6.0 Version: 1.5.0 Depends: R (>= 3.5.0), BSgenome (>= 1.62.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 67272a96950f485d3c0770265f59c85c NeedsCompilation: no Title: Full genome sequences for Macaca fascicularis (Macaca_fascicularis_6.0) Description: Full genome sequences for Macaca fascicularis (Crab-eating macaque) as provided by NCBI (assembly Macaca_fascicularis_6.0, assembly accession GCA_011100615.1) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Macaca_fascicularis Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Macaca fascicularis source.ver: src/contrib/BSgenome.Mfascicularis.NCBI.6.0_1.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Mfuro.UCSC.musFur1 Version: 1.4.1 Depends: BSgenome (>= 1.33.8) Imports: BSgenome License: Artistic-2.0 MD5sum: c33e71746ce551bcbcd22be1979aee63 NeedsCompilation: no Title: Full genome sequences for Mustela putorius furo (UCSC version musFur1) Description: Full genome sequences for Mustela putorius furo (Ferret) as provided by UCSC (musFur1, Apr. 2011) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Mustela_furo Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Mustela putorius furo source.ver: src/contrib/BSgenome.Mfuro.UCSC.musFur1_1.4.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Mmulatta.UCSC.rheMac10 Version: 1.4.2 Depends: BSgenome (>= 1.55.1) Imports: BSgenome License: Artistic-2.0 MD5sum: 2f2afe40d5dcf8d8620aa5e12e311fbc NeedsCompilation: no Title: Full genome sequences for Macaca mulatta (UCSC version rheMac10) Description: Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac10, Feb. 2019) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/BSgenome.Mmulatta.UCSC.rheMac10_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GRaNIE dependencyCount: 60 Package: BSgenome.Mmulatta.UCSC.rheMac2 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 90c43e127e76dfd7cea90de9e1af9a50 NeedsCompilation: no Title: Full genome sequences for Macaca mulatta (UCSC version rheMac2) Description: Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/BSgenome.Mmulatta.UCSC.rheMac2_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Mmulatta.UCSC.rheMac2.masked importsMe: BSgenome.Mmulatta.UCSC.rheMac2.masked dependencyCount: 60 Package: BSgenome.Mmulatta.UCSC.rheMac2.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Mmulatta.UCSC.rheMac2 Imports: BSgenome, BSgenome.Mmulatta.UCSC.rheMac2 License: Artistic-2.0 MD5sum: 7602d86b68df7e4c8d336fede4090a62 NeedsCompilation: no Title: Full masked genome sequences for Macaca mulatta (UCSC version rheMac2) Description: Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmulatta.UCSC.rheMac2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. NOTE: In most assemblies available at UCSC, Tandem Repeats Finder repeats were filtered to retain only the repeats with period <= 12. However, the filtering was omitted for this assembly, so the TRF masks contain all Tandem Repeats Finder results. biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/BSgenome.Mmulatta.UCSC.rheMac2.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Mmulatta.UCSC.rheMac3 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: dfa1ecb9d0bb7a5d9fa628092fb1c354 NeedsCompilation: no Title: Full genome sequences for Macaca mulatta (UCSC version rheMac3) Description: Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/BSgenome.Mmulatta.UCSC.rheMac3_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Mmulatta.UCSC.rheMac3.masked importsMe: BSgenome.Mmulatta.UCSC.rheMac3.masked dependencyCount: 60 Package: BSgenome.Mmulatta.UCSC.rheMac3.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Mmulatta.UCSC.rheMac3 Imports: BSgenome, BSgenome.Mmulatta.UCSC.rheMac3 License: Artistic-2.0 MD5sum: 94f8714865655d3144e14f6fc5c24e76 NeedsCompilation: no Title: Full masked genome sequences for Macaca mulatta (UCSC version rheMac3) Description: Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmulatta.UCSC.rheMac3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/BSgenome.Mmulatta.UCSC.rheMac3.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Mmulatta.UCSC.rheMac8 Version: 1.4.2 Depends: BSgenome (>= 1.40.1) Imports: BSgenome License: Artistic-2.0 MD5sum: e9ad1f70f652c62554e2c5af7638c015 NeedsCompilation: no Title: Full genome sequences for Macaca mulatta (UCSC version rheMac8) Description: Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac8, Nov. 2015) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/BSgenome.Mmulatta.UCSC.rheMac8_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Mmusculus.UCSC.mm10 Version: 1.4.3 Depends: R (>= 3.5.0), BSgenome (>= 1.60.0) Imports: BSgenome License: Artistic-2.0 MD5sum: ffddc2e035527ed1a1e201ac4cc0b1f3 NeedsCompilation: no Title: Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6) Description: Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm10_1.4.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Mmusculus.UCSC.mm10.masked importsMe: epiregulon, musicatk, BSgenome.Mmusculus.UCSC.mm10.masked suggestsMe: AneuFinder, BSgenome, circRNAprofiler, cliProfiler, crisprDesign, CRISPRseek, enhancerHomologSearch, EpiCompare, factR, gcapc, GenomicRanges, GRaNIE, HiCDCPlus, InPAS, m6Aboost, MiRaGE, monaLisa, Motif2Site, multicrispr, NADfinder, periodicDNA, plyinteractions, scanMiRApp, scmeth, SCOPE, SingleMoleculeFootprinting, ICAMS, MicroSEC dependencyCount: 60 Package: BSgenome.Mmusculus.UCSC.mm10.masked Version: 1.4.3 Depends: R (>= 3.5.0), BSgenome (>= 1.60.0), BSgenome.Mmusculus.UCSC.mm10 Imports: BSgenome, BSgenome.Mmusculus.UCSC.mm10 License: Artistic-2.0 MD5sum: 40d51fb428a5fda8c05101a3dddb8957 NeedsCompilation: no Title: Full masked genome sequences for Mus musculus (UCSC genome mm10, based on GRCm38.p6) Description: Full genome sequences for Mus musculus (Mouse) as provided by UCSC (genome mm10, based on GRCm38.p6) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm10, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask). biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm10.masked_1.4.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: podkat, r3Cseq, spiky dependencyCount: 61 Package: BSgenome.Mmusculus.UCSC.mm39 Version: 1.4.3 Depends: R (>= 3.5.0), BSgenome (>= 1.60.0) Imports: BSgenome License: Artistic-2.0 MD5sum: a130ef50dd55da9fd341e6c90b22637b NeedsCompilation: no Title: Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39) Description: Full genome sequences for Mus musculus (Mouse) as provided by UCSC (genome mm39, based on assembly GRCm39) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm39_1.4.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GRaNIE, scanMiRApp dependencyCount: 60 Package: BSgenome.Mmusculus.UCSC.mm8 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: f6aa91cdce2607f30a34f6dd0d678aff NeedsCompilation: no Title: Full genome sequences for Mus musculus (UCSC version mm8) Description: Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm8_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Mmusculus.UCSC.mm8.masked importsMe: BSgenome.Mmusculus.UCSC.mm8.masked dependencyCount: 60 Package: BSgenome.Mmusculus.UCSC.mm8.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Mmusculus.UCSC.mm8 Imports: BSgenome, BSgenome.Mmusculus.UCSC.mm8 License: Artistic-2.0 MD5sum: 5809f925e0fe7c4b73b78a90c9a36fdd NeedsCompilation: no Title: Full masked genome sequences for Mus musculus (UCSC version mm8) Description: Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm8, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm8.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: rTRM dependencyCount: 61 Package: BSgenome.Mmusculus.UCSC.mm9 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: TxDb.Mmusculus.UCSC.mm9.knownGene License: Artistic-2.0 MD5sum: 5a30ba2b4481a17e8e6979eb69eabf78 NeedsCompilation: no Title: Full genome sequences for Mus musculus (UCSC version mm9) Description: Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm9_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Mmusculus.UCSC.mm9.masked importsMe: musicatk, BSgenome.Mmusculus.UCSC.mm9.masked suggestsMe: CAGEr, chipseq, circRNAprofiler, compEpiTools, EpiCompare, GRaNIE, HiCDCPlus, MEDME, methrix, MMDiff2, CAGEWorkflow dependencyCount: 60 Package: BSgenome.Mmusculus.UCSC.mm9.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Mmusculus.UCSC.mm9 Imports: BSgenome, BSgenome.Mmusculus.UCSC.mm9 License: Artistic-2.0 MD5sum: a5dadab14e55cdfc39649ede7a8483d5 NeedsCompilation: no Title: Full masked genome sequences for Mus musculus (UCSC version mm9) Description: Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Mus_musculus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/BSgenome.Mmusculus.UCSC.mm9.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: r3Cseq dependencyCount: 61 Package: BSgenome.Osativa.MSU.MSU7 Version: 0.99.2 Depends: BSgenome (>= 1.58.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 80648058756a2f74aa5a246d38ecf576 NeedsCompilation: no Title: Oryza sativa full genome (MSU7) Description: Oryza sativa full genome as provided by MSU (MSU7 Genome Release) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Oryza_sativa Author: Wen Yao Maintainer: Wen Yao organism: Oryza sativa source.ver: src/contrib/BSgenome.Osativa.MSU.MSU7_0.99.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Ppaniscus.UCSC.panPan1 Version: 1.4.3 Depends: BSgenome (>= 1.56.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 186adb59264d468d17c0f6374e2eb1f6 NeedsCompilation: no Title: Full genome sequences for Pan paniscus (UCSC version panPan1) Description: Full genome sequences for Pan paniscus (Bonobo) as provided by UCSC (panPan1, May 2012) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Pan_paniscus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Pan paniscus source.ver: src/contrib/BSgenome.Ppaniscus.UCSC.panPan1_1.4.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Ppaniscus.UCSC.panPan2 Version: 1.4.3 Depends: BSgenome (>= 1.56.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 74973376a6377d6820d6cd7fb3655a19 NeedsCompilation: no Title: Full genome sequences for Pan paniscus (UCSC version panPan2) Description: Full genome sequences for Pan paniscus (Bonobo) as provided by UCSC (panPan2, Dec. 2015) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Pan_paniscus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Pan paniscus source.ver: src/contrib/BSgenome.Ppaniscus.UCSC.panPan2_1.4.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Ptroglodytes.UCSC.panTro2 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 780200c315779ac75fcf0bdeb9a2eb8c NeedsCompilation: no Title: Full genome sequences for Pan troglodytes (UCSC version panTro2) Description: Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro2_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Ptroglodytes.UCSC.panTro2.masked importsMe: BSgenome.Ptroglodytes.UCSC.panTro2.masked dependencyCount: 60 Package: BSgenome.Ptroglodytes.UCSC.panTro2.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Ptroglodytes.UCSC.panTro2 Imports: BSgenome, BSgenome.Ptroglodytes.UCSC.panTro2 License: Artistic-2.0 MD5sum: e6d069be23712b483b4e4c71554594cf NeedsCompilation: no Title: Full masked genome sequences for Pan troglodytes (UCSC version panTro2) Description: Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ptroglodytes.UCSC.panTro2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro2.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Ptroglodytes.UCSC.panTro3 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 4677c75befd60742f3fc2a54c7f60666 NeedsCompilation: no Title: Full genome sequences for Pan troglodytes (UCSC version panTro3) Description: Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro3_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Ptroglodytes.UCSC.panTro3.masked importsMe: BSgenome.Ptroglodytes.UCSC.panTro3.masked dependencyCount: 60 Package: BSgenome.Ptroglodytes.UCSC.panTro3.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Ptroglodytes.UCSC.panTro3 Imports: BSgenome, BSgenome.Ptroglodytes.UCSC.panTro3 License: Artistic-2.0 MD5sum: 89e96b3796d3b8e8793146597506e3f5 NeedsCompilation: no Title: Full masked genome sequences for Pan troglodytes (UCSC version panTro3) Description: Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ptroglodytes.UCSC.panTro3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro3.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Ptroglodytes.UCSC.panTro5 Version: 1.4.2 Depends: BSgenome (>= 1.40.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 5b88573dd9c3ef838699b65934f8abe3 NeedsCompilation: no Title: Full genome sequences for Pan troglodytes (UCSC version panTro5) Description: Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro5, May 2016) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro5_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Ptroglodytes.UCSC.panTro6 Version: 1.4.2 Depends: BSgenome (>= 1.48.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 1df05d985374e9edc1dd7c3df5118338 NeedsCompilation: no Title: Full genome sequences for Pan troglodytes (UCSC version panTro6) Description: Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro6, Jan. 2018) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Pan_troglodytes Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/BSgenome.Ptroglodytes.UCSC.panTro6_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Rnorvegicus.UCSC.rn4 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: TxDb.Rnorvegicus.UCSC.rn4.ensGene License: Artistic-2.0 MD5sum: 3afe6729237781445d99ec38228ee1a8 NeedsCompilation: no Title: Full genome sequences for Rattus norvegicus (UCSC version rn4) Description: Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn4, Nov. 2004) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn4_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Rnorvegicus.UCSC.rn4.masked importsMe: BSgenome.Rnorvegicus.UCSC.rn4.masked suggestsMe: epigraHMM dependencyCount: 60 Package: BSgenome.Rnorvegicus.UCSC.rn4.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Rnorvegicus.UCSC.rn4 Imports: BSgenome, BSgenome.Rnorvegicus.UCSC.rn4 License: Artistic-2.0 MD5sum: 7e2ea7df588b6b10515e07ea3868c568 NeedsCompilation: no Title: Full masked genome sequences for Rattus norvegicus (UCSC version rn4) Description: Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn4, Nov. 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn4, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn4.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Rnorvegicus.UCSC.rn5 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome Suggests: TxDb.Rnorvegicus.UCSC.rn5.refGene License: Artistic-2.0 MD5sum: 723b1f3ced395ef638b2d68053b05c86 NeedsCompilation: no Title: Full genome sequences for Rattus norvegicus (UCSC version rn5) Description: Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn5_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Rnorvegicus.UCSC.rn5.masked importsMe: BSgenome.Rnorvegicus.UCSC.rn5.masked suggestsMe: BSgenome dependencyCount: 60 Package: BSgenome.Rnorvegicus.UCSC.rn5.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.8), BSgenome.Rnorvegicus.UCSC.rn5 Imports: BSgenome, BSgenome.Rnorvegicus.UCSC.rn5 License: Artistic-2.0 MD5sum: 663233774b79012cb2cc08224ac275ed NeedsCompilation: no Title: Full masked genome sequences for Rattus norvegicus (UCSC version rn5) Description: Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn5.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: r3Cseq dependencyCount: 61 Package: BSgenome.Rnorvegicus.UCSC.rn6 Version: 1.4.1 Depends: BSgenome (>= 1.35.12) Imports: BSgenome Suggests: GenomicFeatures License: Artistic-2.0 MD5sum: 60d3fb201e0b1475912aaf681927096d NeedsCompilation: no Title: Full genome sequences for Rattus norvegicus (UCSC version rn6) Description: Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn6, Jul. 2014) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn6_1.4.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GRaNIE, msgbsR, scanMiRApp dependencyCount: 60 Package: BSgenome.Rnorvegicus.UCSC.rn7 Version: 1.4.3 Depends: R (>= 3.5.0), BSgenome (>= 1.60.0) Imports: BSgenome License: Artistic-2.0 MD5sum: c64f7dd9e30ff88ce02ecd3712e4c454 NeedsCompilation: no Title: Full genome sequences for Rattus norvegicus (UCSC genome rn7) Description: Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (genome rn7) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Rattus_norvegicus Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/BSgenome.Rnorvegicus.UCSC.rn7_1.4.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GRaNIE dependencyCount: 60 Package: BSgenome.Scerevisiae.UCSC.sacCer1 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: ad4c29c16a9635088bf13872b4a02ed4 NeedsCompilation: no Title: Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer1) Description: Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer1, Oct. 2003) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Saccharomyces_cerevisiae Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae source.ver: src/contrib/BSgenome.Scerevisiae.UCSC.sacCer1_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: BSgenome, multicrispr dependencyCount: 60 Package: BSgenome.Scerevisiae.UCSC.sacCer2 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: f1025b4d0fa7891dc46301550163753e NeedsCompilation: no Title: Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer2) Description: Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer2, June 2008) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Saccharomyces_cerevisiae Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae source.ver: src/contrib/BSgenome.Scerevisiae.UCSC.sacCer2_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GenomeInfoDb, GenomicRanges, R453Plus1Toolbox dependencyCount: 60 Package: BSgenome.Scerevisiae.UCSC.sacCer3 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: 7f2d8bba69c3dcebf426d9b19a6bed30 NeedsCompilation: no Title: Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer3) Description: Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer3, April 2011) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Saccharomyces_cerevisiae Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae source.ver: src/contrib/BSgenome.Scerevisiae.UCSC.sacCer3_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: generegulation suggestsMe: DNAshapeR, EpiTxDb, gmapR, HiContacts, Motif2Site, periodicDNA, tRNAscanImport, txcutr, crispRdesignR dependencyCount: 60 Package: BSgenome.Sscrofa.UCSC.susScr11 Version: 1.4.2 Depends: BSgenome (>= 1.48.0) Imports: BSgenome License: Artistic-2.0 MD5sum: db22832229e31e1a629d107df522dff9 NeedsCompilation: no Title: Full genome sequences for Sus scrofa (UCSC version susScr11) Description: Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr11, Feb. 2017) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Sus_scrofa Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Sus scrofa source.ver: src/contrib/BSgenome.Sscrofa.UCSC.susScr11_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Sscrofa.UCSC.susScr3 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: 0457ca52a81c9d7ceadad5830169e6cf NeedsCompilation: no Title: Full genome sequences for Sus scrofa (UCSC version susScr3) Description: Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr3, Aug. 2011) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Sus_scrofa Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Sus scrofa source.ver: src/contrib/BSgenome.Sscrofa.UCSC.susScr3_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Sscrofa.UCSC.susScr3.masked importsMe: BSgenome.Sscrofa.UCSC.susScr3.masked dependencyCount: 60 Package: BSgenome.Sscrofa.UCSC.susScr3.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.11), BSgenome.Sscrofa.UCSC.susScr3 Imports: BSgenome, BSgenome.Sscrofa.UCSC.susScr3 License: Artistic-2.0 MD5sum: fd240651d22d169fd1e27a2b66e40dd7 NeedsCompilation: no Title: Full masked genome sequences for Sus scrofa (UCSC version susScr3) Description: Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr3, Aug. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Sscrofa.UCSC.susScr3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Sus_scrofa Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Sus scrofa source.ver: src/contrib/BSgenome.Sscrofa.UCSC.susScr3.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Tgondii.ToxoDB.7.0 Version: 0.99.1 Depends: BSgenome (>= 1.58.0) Imports: BSgenome License: GPL 3 MD5sum: f67644d1a897fe2ff4139832d4ceaf80 NeedsCompilation: no Title: Toxoplasma gondii ME49 (ToxoDB-7.0) Description: Toxoplasma gondii ME49 genome Release 7.0 available at http://www.toxodb.org biocViews: AnnotationData, Genetics, Toxoplasma_gondii Author: Matthew Croken , Olivier Lucas Maintainer: Matthew Croken organism: Toxoplasma gondii source.ver: src/contrib/BSgenome.Tgondii.ToxoDB.7.0_0.99.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Tguttata.UCSC.taeGut1 Version: 1.4.0 Depends: BSgenome (>= 1.33.5) Imports: BSgenome License: Artistic-2.0 MD5sum: 9753d9568d2a866a627673a518a1dd8a NeedsCompilation: no Title: Full genome sequences for Taeniopygia guttata (UCSC version taeGut1) Description: Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Taeniopygia_guttata Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Taeniopygia guttata source.ver: src/contrib/BSgenome.Tguttata.UCSC.taeGut1_1.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: BSgenome.Tguttata.UCSC.taeGut1.masked importsMe: BSgenome.Tguttata.UCSC.taeGut1.masked dependencyCount: 60 Package: BSgenome.Tguttata.UCSC.taeGut1.masked Version: 1.3.99 Depends: BSgenome (>= 1.31.11), BSgenome.Tguttata.UCSC.taeGut1 Imports: BSgenome, BSgenome.Tguttata.UCSC.taeGut1 License: Artistic-2.0 MD5sum: 63684abb5b330bb54ff89fe78f2e6444 NeedsCompilation: no Title: Full masked genome sequences for Taeniopygia guttata (UCSC version taeGut1) Description: Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects. The sequences are the same as in BSgenome.Tguttata.UCSC.taeGut1, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask). Both masks are "active" by default. biocViews: AnnotationData, Genetics, BSgenome, Taeniopygia_guttata Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Taeniopygia guttata source.ver: src/contrib/BSgenome.Tguttata.UCSC.taeGut1.masked_1.3.99.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 61 Package: BSgenome.Tguttata.UCSC.taeGut2 Version: 1.4.2 Depends: BSgenome (>= 1.36.0) Imports: BSgenome License: Artistic-2.0 MD5sum: 1d39678fb060e643f7e9c4ec25e828c0 NeedsCompilation: no Title: Full genome sequences for Taeniopygia guttata (UCSC version taeGut2) Description: Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut2, Feb. 2013) and stored in Biostrings objects. biocViews: AnnotationData, Genetics, BSgenome, Taeniopygia_guttata Author: The Bioconductor Dev Team Maintainer: Bioconductor Package Maintainer organism: Taeniopygia guttata source.ver: src/contrib/BSgenome.Tguttata.UCSC.taeGut2_1.4.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Vvinifera.URGI.IGGP12Xv0 Version: 0.1 Depends: BSgenome (>= 1.38.0) Imports: BSgenome License: CC0 MD5sum: 3f791de6d699325a97080cd98be86d89 NeedsCompilation: no Title: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 12Xv0) Description: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv0) and available at the URGI (INRA) biocViews: AnnotationData, Genetics, BSgenome, Vitis_vinifera Author: Timothee Flutre [cre,aut] Maintainer: Timothee Flutre organism: Vitis vinifera vinifera source.ver: src/contrib/BSgenome.Vvinifera.URGI.IGGP12Xv0_0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Vvinifera.URGI.IGGP12Xv2 Version: 0.1 Depends: BSgenome (>= 1.38.0) Imports: BSgenome License: CC0 MD5sum: 95472e574ab46327c19e241c381b26a2 NeedsCompilation: no Title: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 12Xv2) Description: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv2) and available at the URGI (INRA) biocViews: AnnotationData, Genetics, BSgenome, Vitis_vinifera Author: Timothee Flutre [cre,aut] Maintainer: Timothee Flutre organism: Vitis vinifera vinifera source.ver: src/contrib/BSgenome.Vvinifera.URGI.IGGP12Xv2_0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: BSgenome.Vvinifera.URGI.IGGP8X Version: 0.1 Depends: BSgenome (>= 1.38.0) Imports: BSgenome License: CC0 MD5sum: fccaf60e5c9352b9c454f7a8ecac2a20 NeedsCompilation: no Title: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 8X) Description: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 8X) and available at the URGI (INRA). More details in Jaillon et al (Nature, 2007). biocViews: AnnotationData, Genetics, BSgenome, Vitis_vinifera Author: Timothee Flutre [cre,aut] Maintainer: Timothee Flutre organism: Vitis vinifera vinifera source.ver: src/contrib/BSgenome.Vvinifera.URGI.IGGP8X_0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: bsubtiliscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 7d7893d28c601206805819ae0e49b31b NeedsCompilation: no Title: bsubtiliscdf Description: A package containing an environment representing the Bsubtilis.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, bsubtilis, Bacillus_subtilis Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/bsubtiliscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: bsubtilisprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 83568fcea2122350b7ce982e79b7ec53 NeedsCompilation: no Title: Probe sequence data for microarrays of type bsubtilis Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Bsubtilis\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, bsubtilis, Bacillus_subtilis Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/bsubtilisprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: cadd.v1.6.hg19 Version: 3.18.1 Depends: GenomicScores, AnnotationHub Suggests: knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: 10cc50d17dbca89406a2290f37d5203c NeedsCompilation: no Title: CADD v1.6 Pathogenicity Scores AnnotationHub Resource Metadata for hg19 Description: Store University of Washington CADD v1.6 hg19 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for University of Washington CADD v1.6 hg19 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources. biocViews: AnnotationData, PackageType, AnnotationHub, Organism, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo organism: Homo sapiens VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/cadd.v1.6.hg19 git_branch: RELEASE_3_18 git_last_commit: 343a071 git_last_commit_date: 2023-10-19 Date/Publication: 2023-11-01 source.ver: src/contrib/cadd.v1.6.hg19_3.18.1.tar.gz vignettes: vignettes/cadd.v1.6.hg19/inst/doc/cadd.v1.6.hg19.html vignetteTitles: cadd.v1.6.hg19 AnnotationHub Resource Metadata hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/cadd.v1.6.hg19/inst/doc/cadd.v1.6.hg19.R dependencyCount: 82 Package: cadd.v1.6.hg38 Version: 3.18.1 Depends: GenomicScores, AnnotationHub Suggests: knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: 620a889ea8bc55f98811a80a3aec814d NeedsCompilation: no Title: CADD v1.6 Pathogenicity Scores AnnotationHub Resource Metadata for hg38 Description: Store University of Washington CADD v1.6 hg38 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for University of Washington CADD v1.6 hg38 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources. biocViews: AnnotationData, PackageType, AnnotationHub, Organism, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo organism: Homo sapiens VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/cadd.v1.6.hg38 git_branch: RELEASE_3_18 git_last_commit: 73d9029 git_last_commit_date: 2023-10-19 Date/Publication: 2023-11-01 source.ver: src/contrib/cadd.v1.6.hg38_3.18.1.tar.gz vignettes: vignettes/cadd.v1.6.hg38/inst/doc/cadd.v1.6.hg38.html vignetteTitles: cadd.v1.6.hg38 AnnotationHub Resource Metadata hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/cadd.v1.6.hg38/inst/doc/cadd.v1.6.hg38.R dependencyCount: 82 Package: canine.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Cf.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a876bb01eda62604a32a96b46e34162b NeedsCompilation: no Title: Affymetrix Affymetrix Canine Array annotation data (chip canine) Description: Affymetrix Affymetrix Canine Array annotation data (chip canine) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Canis_familiaris, canine Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Canis familiaris manufacturer: Affymetrix source.ver: src/contrib/canine.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: canine.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 26d30a229ee9309b9f473dba4d1a61eb NeedsCompilation: no Title: Base Level Annotation databases for canine Description: Base annotation databases for canine, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Canis_familiaris Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Canis familiaris source.ver: src/contrib/canine.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: canine2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Cf.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 24727f27cdf1e324f097a76db81dfc1d NeedsCompilation: no Title: Affymetrix Affymetrix Canine_2 Array annotation data (chip canine2) Description: Affymetrix Affymetrix Canine_2 Array annotation data (chip canine2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Canis_familiaris, canine2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Canis familiaris manufacturer: Affymetrix source.ver: src/contrib/canine2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: canine2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 78740cde98c75e6680470564a4df74c3 NeedsCompilation: no Title: canine2cdf Description: A package containing an environment representing the Canine_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, canine2, Canis_familiaris Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/canine2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: canine2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 7de0f4ea616e8662dc2eaa9ab78d1f13 NeedsCompilation: no Title: Probe sequence data for microarrays of type canine2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Canine\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, canine2, Canis_familiaris Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/canine2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: caninecdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 656f845cc66890015a4e13c5304ec262 NeedsCompilation: no Title: caninecdf Description: A package containing an environment representing the Canine.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, canine, Canis_familiaris Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/caninecdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: canineprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: e5467bc9b7e54c5adce6b409ba7df767 NeedsCompilation: no Title: Probe sequence data for microarrays of type canine Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Canine\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, canine, Canis_familiaris Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/canineprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: celegans.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Ce.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 3cfa9df5a81ef538a890ed8c5d5a98ad NeedsCompilation: no Title: Affymetrix Affymetrix Celegans Array annotation data (chip celegans) Description: Affymetrix Affymetrix Celegans Array annotation data (chip celegans) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Caenorhabditis_elegans, celegans Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans manufacturer: Affymetrix source.ver: src/contrib/celegans.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: celeganscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 1098cd99bfc5000bf9858e4a3acaf452 NeedsCompilation: no Title: celeganscdf Description: A package containing an environment representing the Celegans.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, celegans, Caenorhabditis_elegans Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/celeganscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: celegansprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 7454bba10ff2dd7c03bfe0f9d450f148 NeedsCompilation: no Title: Probe sequence data for microarrays of type celegans Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was C\_elegans\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, celegans, Caenorhabditis_elegans Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/celegansprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ChemmineDrugs Version: 1.0.2 Depends: R (>= 2.10.0), ChemmineR Imports: BiocGenerics,RSQLite Suggests: BiocStyle,knitcitations,knitr License: Artistic-2.0 MD5sum: 2a3646e5173e93080fb5b49564f5d545 NeedsCompilation: no Title: DrugBank data set Description: An annotation package for use with ChemmineR. This package includes data from DrugBank. DUD data can be downloaded using the "DUD()" function in ChemmineR. biocViews: AnnotationData, CustomDBSchema Author: Kevin Horan Maintainer: Kevin Horan VignetteBuilder: knitr source.ver: src/contrib/ChemmineDrugs_1.0.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ChemmineR dependencyCount: 83 Package: chicken.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Gg.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 512f887df339529d4883aad3f3eb6fb8 NeedsCompilation: no Title: Affymetrix Affymetrix Chicken Array annotation data (chip chicken) Description: Affymetrix Affymetrix Chicken Array annotation data (chip chicken) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Gallus_gallus, chicken Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Gallus gallus manufacturer: Affymetrix source.ver: src/contrib/chicken.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: chicken.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 932b29dd4dc58ce6fc5ad5b48ff3ebe6 NeedsCompilation: no Title: Base Level Annotation databases for chicken Description: Base annotation databases for chicken, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Gallus_gallus Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/chicken.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: chickencdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: ab0097b4b7b6c4d94360feb84ab69972 NeedsCompilation: no Title: chickencdf Description: A package containing an environment representing the Chicken.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, chicken, Gallus_gallus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/chickencdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: chickenprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: b33599081ce1ba768ff7992e143c01d0 NeedsCompilation: no Title: Probe sequence data for microarrays of type chicken Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Chicken\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, chicken, Gallus_gallus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/chickenprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: chimp.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: da8f9a3b3ffa3ac728f373419ddd7775 NeedsCompilation: no Title: Base Level Annotation databases for chimp Description: Base annotation databases for chimp, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Pan_troglodytes Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/chimp.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: chromhmmData Version: 0.99.2 Depends: R (>= 4.1) Suggests: rmarkdown, knitr License: GPL-3 MD5sum: eec85c20139b3d826f00264c7b28207c NeedsCompilation: no Title: Chromosome Size, Coordinates and Anchor Files Description: Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice. biocViews: AnnotationData, Homo_sapiens, Mus_musculus Author: Mahmoud Ahmed [aut, cre] () Maintainer: Mahmoud Ahmed VignetteBuilder: knitr BugReports: https://github.com/MahShaaban/chromhmmData/issues source.ver: src/contrib/chromhmmData_0.99.2.tar.gz vignettes: vignettes/chromhmmData/inst/doc/chromhmmData.html vignetteTitles: chromhmmData hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/chromhmmData/inst/doc/chromhmmData.R importsMe: segmenter dependencyCount: 0 Package: citruscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 4af821a0c1ae1adf42b7dc5ce7458593 NeedsCompilation: no Title: citruscdf Description: A package containing an environment representing the Citrus.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, citrus, Citrus_sp Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/citruscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: citrusprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 259b114f96d5307c447d000bd27a7d15 NeedsCompilation: no Title: Probe sequence data for microarrays of type citrus Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Citrus\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, citrus, Citrus_sp Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/citrusprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: clariomdhumanprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 01cb1a5cc4674750b6ce5988cd62fad3 NeedsCompilation: no Title: Affymetrix clariomdhuman annotation data (chip clariomdhumanprobeset) Description: Affymetrix clariomdhuman annotation data (chip clariomdhumanprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, clariomdhumanprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/clariomdhumanprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: clariomdhumantranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 80739a70d77ab785231a9367938035a8 NeedsCompilation: no Title: Affymetrix clariomdhuman annotation data (chip clariomdhumantranscriptcluster) Description: Affymetrix clariomdhuman annotation data (chip clariomdhumantranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, clariomdhumantranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/clariomdhumantranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: clariomshumanhttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 6a5e8e1f9768694be99277aafcc0a69a NeedsCompilation: no Title: Affymetrix clariomshumanht annotation data (chip clariomshumanhttranscriptcluster) Description: Affymetrix clariomshumanht annotation data (chip clariomshumanhttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, clariomshumanhttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/clariomshumanhttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: clariomshumantranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 309b29e044e1227da6d4825bbdf04b76 NeedsCompilation: no Title: Affymetrix clariomshuman annotation data (chip clariomshumantranscriptcluster) Description: Affymetrix clariomshuman annotation data (chip clariomshumantranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, clariomshumantranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/clariomshumantranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: clariomsmousehttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: c0aa96cbd5ee7e19296dde5a72232d17 NeedsCompilation: no Title: Affymetrix clariomsmouseht annotation data (chip clariomsmousehttranscriptcluster) Description: Affymetrix clariomsmouseht annotation data (chip clariomsmousehttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, clariomsmousehttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/clariomsmousehttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: clariomsmousetranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 76d0e2204dcbd5d85d8e53d43710aac5 NeedsCompilation: no Title: Affymetrix clariomsmouse annotation data (chip clariomsmousetranscriptcluster) Description: Affymetrix clariomsmouse annotation data (chip clariomsmousetranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, clariomsmousetranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/clariomsmousetranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: clariomsrathttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: e7c71721f8201bfd1553a98cfbf47458 NeedsCompilation: no Title: Affymetrix clariomsratht annotation data (chip clariomsrathttranscriptcluster) Description: Affymetrix clariomsratht annotation data (chip clariomsrathttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, clariomsrathttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/clariomsrathttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: clariomsrattranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 72923a3a90f2df27a361b1730cfc0d00 NeedsCompilation: no Title: Affymetrix clariomsrat annotation data (chip clariomsrattranscriptcluster) Description: Affymetrix clariomsrat annotation data (chip clariomsrattranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, clariomsrattranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/clariomsrattranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: cMAP Version: 1.15.1 Depends: R(>= 2.4.0) License: LGPL MD5sum: dbf8df4d4540151936884e1c5d747bcf NeedsCompilation: no Title: A data package containing annotation data for cMAP Description: Annotation data file for cMAP assembled using data from public data repositories Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald Maintainer: Biocore Data Team source.ver: src/contrib/cMAP_1.15.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: pathRender dependencyCount: 0 Package: cottoncdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: b9d2a4b43235c6e531b78cca006e84b2 NeedsCompilation: no Title: cottoncdf Description: A package containing an environment representing the Cotton.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, cotton, Gossypium_hirsutum, Gossypium_raimondii, Gossypium_arboretum, Gossypium_barbadense Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/cottoncdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: cottonprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 032fa94876685820d94526fd56dd0b65 NeedsCompilation: no Title: Probe sequence data for microarrays of type cotton Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Cotton\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, cotton, Gossypium_hirsutum, Gossypium_raimondii, Gossypium_arboretum, Gossypium_barbadense Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/cottonprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: CTCF Version: 0.99.11 Suggests: BiocStyle, rmarkdown, knitr, AnnotationHub, GenomicRanges, plyranges, sessioninfo License: MIT + file LICENSE MD5sum: 5ec44245864395de390e68fa56e465af NeedsCompilation: no Title: Genomic coordinates of CTCF binding sites, with orientation Description: Genomic coordinates of CTCF binding sites, with strand orientation (directionality of binding). Position weight matrices (PWMs) from JASPAR, HOCOMOCO, CIS-BP, CTCFBSDB, SwissRegulon, Jolma 2013, were used to uniformly predict CTCF binding sites using FIMO (default settings) on human (hg18, hg19, hg38, T2T) and mouse (mm9, mm10, mm39) genome assemblies. Extra columns include motif/PWM name (e.g., MA0139.1), score, p-value, q-value, and the motif sequence. It is recommended to filter FIMO-predicted sites by 1e-6 p-value threshold instead of using the default 1e-4 threshold. Experimentally obtained CTCF-bound cis-regulatory elements from ENCODE SCREEN and predicted CTCF sites from CTCFBSDB are also included. Selected data are lifted over from a different genome assembly as we demonstrated liftOver is a viable option to obtain CTCF coordinates in different genome assemblies. CTCF sites obtained using JASPAR's MA0139.1 PWM and filtered at 1e-6 p-value threshold are recommended. biocViews: AnnotationData, AnnotationHub, FunctionalAnnotation, GenomicSequence Author: Mikhail Dozmorov [aut, cre] (), Eric Davis [aut], Wancen Mu [aut], Stuart Lee [aut], Tim Triche [aut], Douglas Phanstiel [aut], Michael Love [aut] Maintainer: Mikhail Dozmorov URL: https://github.com/dozmorovlab/CTCF VignetteBuilder: knitr BugReports: https://github.com/dozmorovlab/CTCF/issues git_url: https://git.bioconductor.org/packages/CTCF git_branch: master git_last_commit: ecc98d9 git_last_commit_date: 2022-12-24 Date/Publication: 2022-12-28 source.ver: src/contrib/CTCF_0.99.11.tar.gz vignettes: vignettes/CTCF/inst/doc/CTCF.html vignetteTitles: Introduction to CTCF hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/CTCF/inst/doc/CTCF.R dependencyCount: 0 Package: cyp450cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 7923c4d24b7b654d0f59d52ed2258eb9 NeedsCompilation: no Title: cyp450cdf Description: A package containing an environment representing the CYP450.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, cyp450, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/cyp450cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: DO.db Version: 2.9 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.9.7) Imports: methods, AnnotationDbi License: Artistic-2.0 MD5sum: 63dda6d46d2fe40c52a2e79260a7fb9d NeedsCompilation: no Title: A set of annotation maps describing the entire Disease Ontology Description: A set of annotation maps describing the entire Disease Ontology assembled using data from DO biocViews: AnnotationData, FunctionalAnnotation Author: Jiang Li Maintainer: Jiang Li source.ver: src/contrib/DO.db_2.9.tar.gz vignettes: vignettes/DO.db/inst/doc/DO.db.pdf vignetteTitles: DO.db Overview hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/DO.db/inst/doc/DO.db.R suggestsMe: gwascat dependencyCount: 46 Package: drosgenome1.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Dm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 6432e2ae22cf58524278a559097bdf3a NeedsCompilation: no Title: Affymetrix Affymetrix DrosGenome1 Array annotation data (chip drosgenome1) Description: Affymetrix Affymetrix DrosGenome1 Array annotation data (chip drosgenome1) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Drosophila_melanogaster, drosgenome1 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster manufacturer: Affymetrix source.ver: src/contrib/drosgenome1.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: tigre dependencyCount: 47 Package: drosgenome1cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: e12983f2148c10ef1faa50f810b6eee3 NeedsCompilation: no Title: drosgenome1cdf Description: A package containing an environment representing the DrosGenome1.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, drosgenome1, Drosophila_melanogaster Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/drosgenome1cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: drosgenome1probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 1f12abdfeee65e8a6554f57507d86fb3 NeedsCompilation: no Title: Probe sequence data for microarrays of type drosgenome1 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was DrosGenome1\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, drosgenome1, Drosophila_melanogaster Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/drosgenome1probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: drosophila2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Dm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: c01d0d1b5e17c3b36ad801b44da72b96 NeedsCompilation: no Title: Affymetrix Affymetrix Drosophila_2 Array annotation data (chip drosophila2) Description: Affymetrix Affymetrix Drosophila_2 Array annotation data (chip drosophila2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Drosophila_melanogaster, drosophila2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster manufacturer: Affymetrix source.ver: src/contrib/drosophila2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: drosophila2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 3323e723c133ff2b6188e22bebf3e20a NeedsCompilation: no Title: drosophila2cdf Description: A package containing an environment representing the Drosophila_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, drosophila2, Drosophila_melanogaster Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/drosophila2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: drosophila2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: ba0251902ea0a5f0db61105bdcdc3530 NeedsCompilation: no Title: Probe sequence data for microarrays of type drosophila2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Drosophila\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, drosophila2, Drosophila_melanogaster Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/drosophila2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: Biostrings, XVector dependencyCount: 46 Package: ecoli2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.EcK12.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 110d6549b1d105fdff31ab8f45b08d65 NeedsCompilation: no Title: Affymetrix Affymetrix E_coli_2 Array annotation data (chip ecoli2) Description: Affymetrix Affymetrix E_coli_2 Array annotation data (chip ecoli2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Escherichia_coli, ecoli2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Escherichia coli manufacturer: Affymetrix source.ver: src/contrib/ecoli2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ecoli2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: b5cd1f05322ce494132ff649de9806c6 NeedsCompilation: no Title: ecoli2cdf Description: A package containing an environment representing the E_coli_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, ecoli2, Escherichia_coli Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ecoli2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ecoli2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 061fcb782ee9da3aa5108881677a4531 NeedsCompilation: no Title: Probe sequence data for microarrays of type ecoli2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\_coli\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, ecoli2, Escherichia_coli Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ecoli2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ecoliasv2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: d7771ca1648b26a6af5bfb7582c6c778 NeedsCompilation: no Title: ecoliasv2cdf Description: A package containing an environment representing the Ecoli_ASv2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, ecoliasv2, Escherichia_coli Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ecoliasv2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ecoliasv2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: b3e4332266184576279c3a478f286dc9 NeedsCompilation: no Title: Probe sequence data for microarrays of type ecoliasv2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\_coli\_Asv2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, ecoliasv2, Escherichia_coli Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ecoliasv2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ecolicdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 4e664c1ac41a8ab68ef22f8a889b916c NeedsCompilation: no Title: ecolicdf Description: A package containing an environment representing the Ecoli.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, ecoli, Escherichia_coli Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ecolicdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: ecoliLeucine suggestsMe: ecolitk dependencyCount: 46 Package: ecoliK12.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 0bb11ff1e532df7d2ad9af58d898f4d0 NeedsCompilation: no Title: Base Level Annotation databases for E coli K12 Strain Description: Base annotation databases for E coli K12 Strain, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Escherichia_coli Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Escherichia coli source.ver: src/contrib/ecoliK12.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ecoliprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 09586f9907bdbc43ba5ea4ce07c1f756 NeedsCompilation: no Title: Probe sequence data for microarrays of type ecoli Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\_coli\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, ecoli, Escherichia_coli Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ecoliprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ecoliSakai.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 0975b5ae0a2318f8a266e35a86d2bcf1 NeedsCompilation: no Title: Base Level Annotation databases for E coli Sakai Strain Description: Base annotation databases for E coli Sakai Strain, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Escherichia_coli Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Escherichia coli source.ver: src/contrib/ecoliSakai.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ENCODExplorerData Version: 0.99.5 Depends: R (>= 3.6), Imports: tools, jsonlite, RCurl, data.table, methods Suggests: AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr License: Artistic-2.0 MD5sum: c6d9b491548529db0739b79c98adacd7 NeedsCompilation: no Title: A compilation of ENCODE metadata Description: This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format. biocViews: AnnotationHub, Homo_sapiens, Mus_musculus, CustomDBSchema Author: Charles Joly Beauparlant [aut], Eric Fournier [aut, cre], Arnaud Droit [aut] Maintainer: Eric Fournier VignetteBuilder: knitr BugReports: https://github.com/ArnaudDroitLab/ENCODExplorerData/issues source.ver: src/contrib/ENCODExplorerData_0.99.5.tar.gz vignettes: vignettes/ENCODExplorerData/inst/doc/DataUpdate.html vignetteTitles: Introduction to ENCODExplorerData hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 6 Package: EnsDb.Hsapiens.v75 Version: 2.99.0 Depends: ensembldb License: Artistic-2.0 MD5sum: 6c896475252903972bfc6c0eb0d8f334 NeedsCompilation: no Title: Ensembl based annotation package Description: Exposes an annotation databases generated from Ensembl. biocViews: AnnotationData, EnsDb, Homo_sapiens Author: Johannes Rainer Maintainer: Johannes Rainer organism: Homo_sapiens source.ver: src/contrib/EnsDb.Hsapiens.v75_2.99.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: MetaboSignal, uncoverappLib, GRIN2 suggestsMe: AnnotationDbi, biovizBase, ChIPpeakAnno, ggbio, ldblock, TFutils, TVTB, locuszoomr dependencyCount: 82 Package: EnsDb.Hsapiens.v79 Version: 2.99.0 Depends: ensembldb License: Artistic-2.0 MD5sum: 16b5629805c07649b2aa501d34fcc588 NeedsCompilation: no Title: Ensembl based annotation package Description: Exposes an annotation databases generated from Ensembl. biocViews: AnnotationData, EnsDb, Homo_sapiens Author: Johannes Rainer Maintainer: Johannes Rainer organism: Homo_sapiens source.ver: src/contrib/EnsDb.Hsapiens.v79_2.99.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: scFeatures suggestsMe: ChIPpeakAnno dependencyCount: 82 Package: EnsDb.Hsapiens.v86 Version: 2.99.0 Depends: ensembldb License: Artistic-2.0 MD5sum: 0c9e52512ff6dbbbdb754c4d41149939 NeedsCompilation: no Title: Ensembl based annotation package Description: Exposes an annotation databases generated from Ensembl. biocViews: AnnotationData, EnsDb, Homo_sapiens Author: Johannes Rainer Maintainer: Johannes Rainer organism: Homo_sapiens source.ver: src/contrib/EnsDb.Hsapiens.v86_2.99.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: OSCA.workflows importsMe: consensusDE, RITAN, uncoverappLib suggestsMe: BUSpaRse, ChIPpeakAnno, CleanUpRNAseq, demuxSNP, drugTargetInteractions, ensembldb, fishpond, InPAS, nullranges, RAIDS, weitrix, wiggleplotr, crosstalkr dependencyCount: 82 Package: EnsDb.Mmusculus.v75 Version: 2.99.0 Depends: ensembldb License: Artistic-2.0 MD5sum: 081bf6f90ff77031b634b4fe32e00be8 NeedsCompilation: no Title: Ensembl based annotation package Description: Exposes an annotation databases generated from Ensembl. biocViews: AnnotationData, EnsDb, Mus_musculus Author: Johannes Rainer Maintainer: Johannes Rainer organism: Mus_musculus source.ver: src/contrib/EnsDb.Mmusculus.v75_2.99.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 82 Package: EnsDb.Mmusculus.v79 Version: 2.99.0 Depends: ensembldb License: Artistic-2.0 MD5sum: 28bbab743b0d2d550dbfa0bcd3274fad NeedsCompilation: no Title: Ensembl based annotation package Description: Exposes an annotation databases generated from Ensembl. biocViews: AnnotationData, EnsDb, Mus_musculus Author: Johannes Rainer Maintainer: Johannes Rainer organism: Mus_musculus source.ver: src/contrib/EnsDb.Mmusculus.v79_2.99.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: scFeatures suggestsMe: epivizrData, InPAS dependencyCount: 82 Package: EnsDb.Rnorvegicus.v75 Version: 2.99.0 Depends: ensembldb License: Artistic-2.0 MD5sum: 40ff53b41aa6fad0d5bd15f9c6f3bad8 NeedsCompilation: no Title: Ensembl based annotation package Description: Exposes an annotation databases generated from Ensembl. biocViews: AnnotationData, EnsDb, Rattus_norvegicus Author: Johannes Rainer Maintainer: Johannes Rainer organism: Rattus_norvegicus source.ver: src/contrib/EnsDb.Rnorvegicus.v75_2.99.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 82 Package: EnsDb.Rnorvegicus.v79 Version: 2.99.0 Depends: ensembldb License: Artistic-2.0 MD5sum: 7d305bd0d1a073bd8c60063ae210a7a9 NeedsCompilation: no Title: Ensembl based annotation package Description: Exposes an annotation databases generated from Ensembl. biocViews: AnnotationData, EnsDb, Rattus_norvegicus Author: Johannes Rainer Maintainer: Johannes Rainer organism: Rattus_norvegicus source.ver: src/contrib/EnsDb.Rnorvegicus.v79_2.99.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 82 Package: EPICv2manifest Version: 0.99.7 Depends: R (>= 4.3.0) Imports: AnnotationHub Suggests: AnnotationHubData, knitr License: Artistic-2.0 MD5sum: cca8526c45bc0124b76fdc206d1ae482 NeedsCompilation: no Title: Illumina Infinium MethylationEPIC v2.0 extended manifest from Peters et al. 2024 Description: A data.frame containing an extended probe manifest for the Illumina Infinium Methylation v2.0 Kit. Contains the complete manifest from the Illumina-provided EPIC-8v2-0_EA.csv, plus additional probewise information described in Peters et al. (2024). biocViews: AnnotationData, AnnotationHub, probe, IlluminaChip, Homo_sapiens Author: Tim Peters [aut, cre], Ruth Pidsley [ctb] Maintainer: Tim Peters VignetteBuilder: knitr BugReports: https://support.bioconductor.org/t/EPICv2manifest git_url: https://git.bioconductor.org/packages/EPICv2manifest git_branch: devel git_last_commit: 1014dad git_last_commit_date: 2024-03-08 Date/Publication: 2024-03-13 source.ver: src/contrib/EPICv2manifest_0.99.7.tar.gz vignettes: vignettes/EPICv2manifest/inst/doc/EPICv2manifest.html vignetteTitles: The EPICv2manifest package user's guide hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/EPICv2manifest/inst/doc/EPICv2manifest.R suggestsMe: DMRcate dependencyCount: 66 Package: EpiTxDb.Hs.hg38 Version: 0.99.7 Depends: R (>= 4.0), AnnotationHub, EpiTxDb Suggests: BiocStyle, knitr, rmarkdown, testthat, Modstrings, rtracklayer License: Artistic-2.0 MD5sum: e30af95f285788a9777a8207a8ef73a9 NeedsCompilation: no Title: Annotation package for EpiTxDb objects Description: Exposes an annotation databases generated from several sources by exposing these as EpiTxDb object. Generated for Homo sapiens/hg38. biocViews: AnnotationHub, AnnotationData, Organism, Homo_sapiens Author: Felix G.M. Ernst [aut, cre] () Maintainer: Felix G.M. Ernst URL: https://github.com/FelixErnst/EpiTxDb.Hs.hg38 organism: Homo sapiens VignetteBuilder: knitr BugReports: https://github.com/FelixErnst/EpiTxDb.Hs.hg38/issues source.ver: src/contrib/EpiTxDb.Hs.hg38_0.99.7.tar.gz vignettes: vignettes/EpiTxDb.Hs.hg38/inst/doc/EpiTxDb.Hs.hg38.html vignetteTitles: EpiTxDb.Hs.hg38 hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/EpiTxDb.Hs.hg38/inst/doc/EpiTxDb.Hs.hg38.R suggestsMe: EpiTxDb dependencyCount: 126 Package: EpiTxDb.Mm.mm10 Version: 0.99.6 Depends: R (>= 4.0), AnnotationHub, EpiTxDb Suggests: BiocStyle, knitr, rmarkdown, testthat License: Artistic-2.0 MD5sum: 518e4967f7f038e3cbf2865b74dc4f1b NeedsCompilation: no Title: Annotation package for EpiTxDb objects Description: Exposes an annotation databases generated from several sources by exposing these as EpiTxDb object. Generated for Mus musculus/mm10. biocViews: AnnotationHub, AnnotationData, Organism, Mus_musculus Author: Felix G.M. Ernst [aut, cre] () Maintainer: Felix G.M. Ernst URL: https://github.com/FelixErnst/EpiTxDb.Mm.mm10 organism: Homo sapiens VignetteBuilder: knitr BugReports: https://github.com/FelixErnst/EpiTxDb.Mm.mm10/issues source.ver: src/contrib/EpiTxDb.Mm.mm10_0.99.6.tar.gz vignettes: vignettes/EpiTxDb.Mm.mm10/inst/doc/EpiTxDb.Mm.mm10.html vignetteTitles: EpiTxDb.Mm.mm10 hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/EpiTxDb.Mm.mm10/inst/doc/EpiTxDb.Mm.mm10.R dependencyCount: 126 Package: EpiTxDb.Sc.sacCer3 Version: 0.99.5 Depends: R (>= 4.0), AnnotationHub, EpiTxDb Suggests: BiocStyle, knitr, rmarkdown, testthat, Modstrings, rtracklayer License: Artistic-2.0 MD5sum: 6d9e5f37e5dcb60e890d99d80fddda00 NeedsCompilation: no Title: Annotation package for EpiTxDb objects Description: Exposes an annotation databases generated from several sources by exposing these as EpiTxDb object. Generated for Saccharomyces cerevisiae/sacCer3. biocViews: AnnotationHub, AnnotationData, Organism, Saccharomyces_cerevisiae Author: Felix G.M. Ernst [aut, cre] () Maintainer: Felix G.M. Ernst URL: https://github.com/FelixErnst/EpiTxDb.Sc.sacCer3 organism: Saccharomyces cerevisiae VignetteBuilder: knitr BugReports: https://github.com/FelixErnst/EpiTxDb.Sc.sacCer3/issues source.ver: src/contrib/EpiTxDb.Sc.sacCer3_0.99.5.tar.gz vignettes: vignettes/EpiTxDb.Sc.sacCer3/inst/doc/EpiTxDb.Sc.sacCer3.html vignetteTitles: EpiTxDb.Sc.sacCer3 hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/EpiTxDb.Sc.sacCer3/inst/doc/EpiTxDb.Sc.sacCer3.R dependencyCount: 126 Package: EuPathDB Version: 1.0.1 Depends: R (>= 3.5), Biobase, GenomicRanges, GenomeInfoDbData, AnnotationHub (>= 2.13.8), Imports: AnnotationHubData, Biostrings, BiocManager, utils Suggests: dplyr, knitr, BiocStyle, rmarkdown, jsonlite License: Artistic-2.0 MD5sum: 1451c3ab6c224d9a4cfbdf27dc5c2680 NeedsCompilation: no Title: Provides access to pathogen annotation resources available on EuPathDB databases Description: Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework. biocViews: AnnotationData, AnnotationHub, DataImport, EuPathDB Author: Keith Hughitt [aut, cre] Maintainer: Keith Hughitt URL: https://github.com/khughitt/EuPathDB VignetteBuilder: knitr BugReports: https://github.com/khughitt/EuPathDB/issues source.ver: src/contrib/EuPathDB_1.0.1.tar.gz vignettes: vignettes/EuPathDB/inst/doc/EuPathDB.html vignetteTitles: Accessing EuPathDB Resources using AnnotationHub hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/EuPathDB/inst/doc/EuPathDB.R dependencyCount: 124 Package: excluderanges Version: 0.99.8 Depends: GenomicRanges Suggests: BiocStyle, knitr, RefManageR, rmarkdown, ggridges, httr, readr, pheatmap, rtracklayer, AnnotationHub License: MIT + file LICENSE MD5sum: 2ec19df8a51df1900a339f7f505cd5fa NeedsCompilation: no Title: Genomic coordinates of problematic genomic regions Description: Genomic coordinates of problematic genomic regions that should be avoided when working with genomic data. GRanges of exclusion regions (formerly known as blacklisted), centromeres, telomeres, known heterochromatin regions, etc. (UCSC 'gap' table data). Primarily for human and mouse genomes, hg19/hg38 and mm9/mm10 genome assemblies. biocViews: AnnotationData, AnnotationHub, FunctionalAnnotation, GenomicSequence Author: Mikhail Dozmorov [aut, cre] (), Eric Davis [aut], Wancen Mu [aut], Stuart Lee [aut], Tim Triche [aut], Douglas Phanstiel [aut], Michael Love [aut] Maintainer: Mikhail Dozmorov URL: https://github.com/dozmorovlab/excluderanges VignetteBuilder: knitr BugReports: https://github.com/dozmorovlab/excluderanges/issues git_url: https://git.bioconductor.org/packages/excluderanges git_branch: master git_last_commit: f53e82d git_last_commit_date: 2022-11-28 Date/Publication: 2022-12-28 source.ver: src/contrib/excluderanges_0.99.8.tar.gz vignettes: vignettes/excluderanges/inst/doc/excluderanges.html vignetteTitles: excluderanges hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/excluderanges/inst/doc/excluderanges.R suggestsMe: nullranges dependencyCount: 24 Package: FDb.FANTOM4.promoters.hg19 Version: 1.0.0 Depends: GenomicFeatures (>= 1.7.22), Biostrings Imports: GenomicFeatures, AnnotationDbi Suggests: BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats License: Artistic-2.0 MD5sum: 99a610eb895470e3d945acc5cfb3ebe6 NeedsCompilation: no Title: Annotation package for FANTOM4 promoters identified from THP-1 cells Description: FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified biocViews: AnnotationData, Homo_sapiens Author: Tim Triche, Jr. Maintainer: Tim Triche, Jr. organism: Homo sapiens source.ver: src/contrib/FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: FDb.InfiniumMethylation.hg18 Version: 2.2.0 Depends: R (>= 2.10), GenomicFeatures (>= 1.7.22), TxDb.Hsapiens.UCSC.hg18.knownGene, org.Hs.eg.db Imports: GenomicFeatures, AnnotationDbi, Biostrings License: Artistic-2.0 MD5sum: 95ceab50d0a7c3d417cee12fbe3defb3 NeedsCompilation: no Title: Annotation package for Illumina Infinium DNA methylation probes Description: Compiled HumanMethylation27 and HumanMethylation450 annotations biocViews: AnnotationData, DNAMethylation, Homo_sapiens Author: Tim Triche, Jr. Maintainer: Tim Triche, Jr. organism: Homo sapiens source.ver: src/contrib/FDb.InfiniumMethylation.hg18_2.2.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: methylumi dependencyCount: 80 Package: FDb.InfiniumMethylation.hg19 Version: 2.2.0 Depends: R (>= 2.10), GenomicFeatures (>= 1.7.22), TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db Imports: GenomicFeatures, AnnotationDbi, Biostrings Suggests: FDb.UCSC.snp135common.hg19 License: Artistic-2.0 MD5sum: b8b1abc599b9556b9fe9c6e824cb2697 NeedsCompilation: no Title: Annotation package for Illumina Infinium DNA methylation probes Description: Compiled HumanMethylation27 and HumanMethylation450 annotations biocViews: AnnotationData, DNAMethylation, Homo_sapiens Author: Tim Triche, Jr. Maintainer: Tim Triche, Jr. organism: Homo sapiens source.ver: src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: methylumi suggestsMe: omicsPrint dependencyCount: 80 Package: FDb.UCSC.snp135common.hg19 Version: 1.0.0 Depends: GenomicFeatures (>= 1.7.22) Imports: GenomicFeatures, AnnotationDbi Suggests: BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP.20111119 License: Artistic-2.0 MD5sum: 0cdca5fa595bb69464016ceb97635f78 NeedsCompilation: no Title: UCSC common SNPs track for dbSNP build 135 Description: makeFeatureDbFromUCSC cannot cope with this track, hence a package biocViews: AnnotationData, Homo_sapiens Author: Tim Triche, Jr. Maintainer: Tim Triche, Jr. organism: Homo sapiens source.ver: src/contrib/FDb.UCSC.snp135common.hg19_1.0.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: FDb.InfiniumMethylation.hg19 dependencyCount: 78 Package: FDb.UCSC.snp137common.hg19 Version: 1.0.0 Depends: GenomicFeatures (>= 1.7.22) Imports: GenomicFeatures, AnnotationDbi Suggests: BSgenome.Hsapiens.UCSC.hg19 License: Artistic-2.0 MD5sum: dac83f2d2f9ea9f033e50beac5c44838 NeedsCompilation: no Title: UCSC common SNPs track for dbSNP build 137 Description: makeFeatureDbFromUCSC cannot cope with this track, hence a package biocViews: AnnotationData, Homo_sapiens Author: Tim Triche, Jr. Maintainer: Tim Triche, Jr. organism: Homo sapiens source.ver: src/contrib/FDb.UCSC.snp137common.hg19_1.0.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: FDb.UCSC.tRNAs Version: 1.0.1 Depends: GenomicFeatures (>= 1.9.39) Imports: GenomicFeatures, AnnotationDbi License: Artistic-2.0 MD5sum: 77bfdadd4d9f995a72b001e4e41792fa NeedsCompilation: no Title: Annotation package for FeatureDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as FeatureDb objects biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens Author: Marc Carlson Maintainer: Biocore Data Team organism: Homo sapiens source.ver: src/contrib/FDb.UCSC.tRNAs_1.0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GenomicFeatures, OrganismDbi dependencyCount: 78 Package: fitCons.UCSC.hg19 Version: 3.7.1 Depends: R (>= 3.0.0), GenomicScores (>= 1.3.19) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome License: Artistic-2.0 MD5sum: 53d954890ec9b91084664a10161ce391 NeedsCompilation: no Title: UCSC fitCons fitness consequences scores for hg19 Description: Store UCSC fitCons fitness consequences scores version 1.01 for the human genome (hg19). biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/fitCons.UCSC.hg19_3.7.1.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: fly.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: faeba43dee9e5ff967b35501ca25294c NeedsCompilation: no Title: Base Level Annotation databases for fly Description: Base annotation databases for fly, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Drosophila_melanogaster Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/fly.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: geneplast.data Version: 0.99.9 Depends: R (>= 4.0) Imports: ape, treeio, tibble, tidyr, dplyr, readr, purrr, igraph, geneplast, BiocFileCache Suggests: geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown License: Artistic-2.0 MD5sum: c25d661b13014ce9abc6da7411a6e539 NeedsCompilation: no Title: Input data for the geneplast package via AnnotationHub Description: The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases. biocViews: Genetics, GeneRegulation, SystemsBiology, AnnotationData, AnnotationHub Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut] Maintainer: Leonardo Campos VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/geneplast.data git_branch: devel git_last_commit: 847b6b2 git_last_commit_date: 2024-01-08 Date/Publication: 2024-02-28 source.ver: src/contrib/geneplast.data_0.99.9.tar.gz vignettes: vignettes/geneplast.data/inst/doc/geneplastdata.html vignetteTitles: Supporting data for geneplast evolutionary analyses hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/geneplast.data/inst/doc/geneplastdata.R suggestsMe: geneplast dependencyCount: 71 Package: geneplast.data.string.v91 Version: 0.99.6 Depends: R (>= 3.5) License: Artistic-2.0 MD5sum: 86433f8489d9228c5ed73e2b75a55398 NeedsCompilation: no Title: Input data for the geneplast package Description: The package geneplast.data.string.v91 contains input data used in the analysis pipelines available in the geneplast package. biocViews: AnnotationData, FunctionalAnnotation Author: Sheyla Trefflich, Rodrigo Damolin, Mauro Castro. Maintainer: Sheyla Trefflich , Mauro Castro source.ver: src/contrib/geneplast.data.string.v91_0.99.6.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: geneplast dependencyCount: 0 Package: GeneSummary Version: 0.99.6 Depends: R (>= 4.0) Suggests: knitr, rmarkdown, markdown, testthat License: MIT + file LICENSE MD5sum: 9df029a96bf0fa5bb76ee8b8923c458c NeedsCompilation: no Title: RefSeq Gene Summaries Description: This package provides long description of genes collected from the RefSeq database. The text in "COMMENT" section started with "Summary" is extracted as the description of the gene. The long text descriptions can be used for analysis such as text mining. biocViews: AnnotationData, Organism, Homo_sapiens Author: Zuguang Gu [aut, cre] () Maintainer: Zuguang Gu URL: https://github.com/jokergoo/GeneSummary VignetteBuilder: knitr BugReports: https://github.com/jokergoo/GeneSummary/issues git_url: https://git.bioconductor.org/packages/GeneSummary git_branch: devel git_last_commit: 4ac4046 git_last_commit_date: 2023-09-23 Date/Publication: 2023-09-27 source.ver: src/contrib/GeneSummary_0.99.6.tar.gz vignettes: vignettes/GeneSummary/inst/doc/GeneSummary.html vignetteTitles: Gene Summaries from RefSeq Database hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/GeneSummary/inst/doc/GeneSummary.R dependencyCount: 0 Package: GenomeInfoDbData Version: 1.2.13 Depends: R (>= 3.5.0) License: Artistic-2.0 MD5sum: 8798e58b89d84d9fa6a85f2191704668 NeedsCompilation: no Title: Species and taxonomy ID look up tables used by GenomeInfoDb Description: Files for mapping between NCBI taxonomy ID and species. Used by functions in the GenomeInfoDb package. biocViews: AnnotationData, Organism Author: Bioconductor Core Team Maintainer: Bioconductor Maintainer source.ver: src/contrib/GenomeInfoDbData_1.2.13.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: EuPathDB importsMe: countsimQC, GenomeInfoDb, igvShiny, multiHiCcompare, Ularcirc suggestsMe: AnnotationHubData, orthogene dependencyCount: 0 Package: genomewidesnp5Crlmm Version: 1.0.6 Imports: utils License: Artistic-2.0 MD5sum: cc24140cd17758b8e09f4fe6c931526a NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for fast genotyping Affymetrix GenomeWideSnp_5 arrays using the 'crlmm' package. Annotation build is hg19. Author: Benilton S Carvalho Maintainer: Benilton S Carvalho , Robert Scharpf source.ver: src/contrib/genomewidesnp5Crlmm_1.0.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: oligoClasses dependencyCount: 1 Package: genomewidesnp6Crlmm Version: 1.0.7 Imports: utils License: Artistic-2.0 MD5sum: 13dd5aef3d814524896f2f3013beb78b NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for fast genotyping Affymetrix GenomeWideSnp_6 arrays using the 'crlmm' package. biocViews: AnnotationData Author: Benilton S Carvalho Maintainer: Benilton S Carvalho , Robert Scharpf source.ver: src/contrib/genomewidesnp6Crlmm_1.0.7.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: crlmm, oligoClasses dependencyCount: 1 Package: GenomicState Version: 0.99.15 Depends: AnnotationHub Imports: GenomicFeatures, GenomeInfoDb, rtracklayer, bumphunter, derfinder (>= 1.21.7), AnnotationDbi, IRanges, org.Hs.eg.db, utils, methods Suggests: knitr, rmarkdown, BiocStyle, sessioninfo, testthat (>= 2.1.0), glue, derfinderPlot, AnnotationHubData, RefManageR, GenomicRanges, covr License: Artistic-2.0 MD5sum: 59c2d85a72f62cb12bad697fcbce5edc NeedsCompilation: no Title: Build and access GenomicState objects for use with derfinder tools from sources like Gencode Description: This package contains functions for building GenomicState objects from different annotation sources such as Gencode. It also provides access to these files at JHPCE. biocViews: Homo_sapiens, TxDb, AnnotationHub, AnnotationData Author: Leonardo Collado-Torres [aut, cre] () Maintainer: Leonardo Collado-Torres URL: https://github.com/LieberInstitute/GenomicState VignetteBuilder: knitr BugReports: https://support.bioconductor.org/t/GenomicState git_url: https://git.bioconductor.org/packages/GenomicState git_branch: master git_last_commit: 6135721 git_last_commit_date: 2021-08-09 Date/Publication: 2021-10-13 source.ver: src/contrib/GenomicState_0.99.15.tar.gz vignettes: vignettes/GenomicState/inst/doc/GenomicState.html vignetteTitles: Introduction to GenomicState hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/GenomicState/inst/doc/GenomicState.R importsMe: recountWorkflow dependencyCount: 108 Package: GGHumanMethCancerPanelv1.db Version: 1.4.1 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.11.9), org.Hs.eg.db (>= 2.4.5) Imports: methods, AnnotationDbi, AnnotationForge Suggests: annotate License: Artistic-2.0 MD5sum: e8f4a37182b175fb33dd54f8093e6f52 NeedsCompilation: no Title: Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1) Description: Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1) assembled using data from public repositories biocViews: AnnotationData, IlluminaChip, Homo_sapiens, GGHumanMethCancerPanelv1 Author: Sean Davis Maintainer: Sean Davis organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/GGHumanMethCancerPanelv1.db_1.4.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 51 Package: GO.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI License: Artistic-2.0 MD5sum: a41513069bb1ff4a2ecfa1a538110699 NeedsCompilation: no Title: A set of annotation maps describing the entire Gene Ontology Description: A set of annotation maps describing the entire Gene Ontology assembled using data from GO biocViews: AnnotationData, FunctionalAnnotation Author: Marc Carlson Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/GO.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: annaffy, BicARE, geneXtendeR, goProfiles, goTools, SemDist, topGO, Homo.sapiens, Mus.musculus, Rattus.norvegicus, davidTiling, RnaSeqGeneEdgeRQL, GOxploreR importsMe: ADAM, ADAMgui, adSplit, bioCancer, BioNAR, clusterProfiler, CNEr, compEpiTools, consICA, EnrichmentBrowser, famat, gage, GeneTonic, GenomicInteractionNodes, GOpro, GOSemSim, goseq, goSTAG, GOstats, goTools, ideal, MCbiclust, methylGSA, missMethyl, mosdef, NetSAM, pcaExplorer, Pigengene, rGREAT, rgsepd, rrvgo, SGCP, simplifyEnrichment, ExpHunterSuite, BiSEp, WGCNA suggestsMe: annotate, AnnotationDbi, AnnotationForge, appreci8R, BiocSet, Category, categoryCompare, ChIPpeakAnno, erma, esetVis, fgga, FGNet, GlobalAncova, globaltest, GSEABase, hpar, InteractiveComplexHeatmap, iSEEpathways, iSEEu, limma, MetMashR, mgsa, MLP, oppar, phenoTest, pRoloc, rols, RTopper, safe, scde, simona, sparrow, SpliceWiz, systemPipeR, TFutils, BioMartGOGeneSets, SomaScan.db, chipenrich.data, msigdb, RforProteomics, yeastExpData, BaseSet, CALANGO, clValid, conos, GeneSelectR, goat, maGUI, pagoda2, sand, scITD dependencyCount: 46 Package: gp53cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 2887dd15d3fa29b5c13b068c8d641f61 NeedsCompilation: no Title: gp53cdf Description: A package containing an environment representing the GP53.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, gp53, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/gp53cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: grasp2db Version: 1.1.0 Depends: RSQLite, dplyr, dbplyr Imports: methods, utils, stats, GenomeInfoDb, AnnotationHub, digest Suggests: gwascat, knitr Enhances: AnnotationHubData License: Artistic-2.0 + file LICENSE MD5sum: 3fc90fc7c99e7da51dcbb687fd2d5515 NeedsCompilation: no Title: grasp2db, sqlite wrap of GRASP 2.0 Description: grasp2db, sqlite wrap of NHLBI GRASP 2.0, an extended GWAS catalog. Author: VJ Carey Maintainer: VJ Carey VignetteBuilder: knitr source.ver: src/contrib/grasp2db_1.1.0.tar.gz vignettes: vignettes/grasp2db/inst/doc/grasp2db.pdf, vignettes/grasp2db/inst/doc/BiocGRASP2.html vignetteTitles: grasp2db: interface to a high density GWAS catalogue, Notes on Bioconductor's GRASP2 database curation hasREADME: TRUE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/grasp2db/inst/doc/BiocGRASP2.R, vignettes/grasp2db/inst/doc/grasp2db.R suggestsMe: AnnotationHubData dependencyCount: 67 Package: gwascatData Version: 0.99.6 Imports: data.table Suggests: testthat, AnnotationHub, rmarkdown, knitr License: Artistic-2.0 MD5sum: fa09db539ac0a16ba136e810a5b9970a NeedsCompilation: no Title: A text file in cloud with March 30 2021 snapshot of EBI/EMBL GWAS catalog Description: This package manages a text file in cloud with March 30 2021 snapshot of EBI/EMBL GWAS catalog.This simplifies access to a snapshot of EBI GWASCAT. More current images can be obtained using the gwascat package. biocViews: AnnotationData, AnnotationHub Author: Sara Stankiewicz [aut, cre] () Maintainer: Sara Stankiewicz VignetteBuilder: knitr BugReports: https://github.com/stankiewicz565/gwascatData/issues source.ver: src/contrib/gwascatData_0.99.6.tar.gz vignettes: vignettes/gwascatData/inst/doc/gwascatData.pdf vignetteTitles: gwascatData -- a snapshot of the EBI/EMBL GWAS catalog hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/gwascatData/inst/doc/gwascatData.R dependencyCount: 2 Package: h10kcod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Hs.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: a555739cea229f286953c3297c145e9c NeedsCompilation: no Title: Codelink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod) Description: Codelink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Homo_sapiens, h10kcod Author: Diego Diez Maintainer: Diego Diez organism: Homo sapiens manufacturer: Codelink source.ver: src/contrib/h10kcod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: h20kcod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Hs.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 3647facb272f58424f4c94ef92e8ee45 NeedsCompilation: no Title: Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod) Description: Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Homo_sapiens, h20kcod Author: Diego Diez Maintainer: Diego Diez organism: Homo sapiens manufacturer: Codelink source.ver: src/contrib/h20kcod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hapmap370k Version: 1.0.1 Suggests: crlmm License: GPL MD5sum: 569556341a45da799372aaf1012be72e NeedsCompilation: no Title: Example Illumina 370k HapMap Data Description: Example HapMap data from Illumina 370k BeadChips biocViews: ExperimentData Author: Matthew Ritchie Maintainer: Matthew Ritchie source.ver: src/contrib/hapmap370k_1.0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: hcg110.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 4c536c3539a61d7f1f67dac149f10b11 NeedsCompilation: no Title: Affymetrix Affymetrix HC_G110 Array annotation data (chip hcg110) Description: Affymetrix Affymetrix HC_G110 Array annotation data (chip hcg110) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hcg110 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hcg110.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hcg110cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: b53167876217ddb301204719da23eafc NeedsCompilation: no Title: hcg110cdf Description: A package containing an environment representing the HC_G110.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hcg110, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hcg110cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hcg110probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 51af8d6a7090ea7c5fe630dcea68bfb3 NeedsCompilation: no Title: Probe sequence data for microarrays of type hcg110 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HC-G110\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hcg110, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hcg110probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: HDO.db Version: 1.0.0 Depends: R (>= 4.2.0) Imports: AnnotationDbi, DBI, methods, utils Suggests: rmarkdown, knitr, testthat (>= 3.0.0) License: Artistic-2.0 MD5sum: adb9df8c89fa3f2f877e7db1fbeb6b70 NeedsCompilation: no Title: A set of annotation maps describing the entire Human Disease Ontology Description: A set of annotation maps describing the entire Human Disease Ontology assembled using data from DO. Its annotation data comes from https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology. biocViews: AnnotationData, FunctionalAnnotation Author: Erqiang Hu [aut, cre] () Maintainer: Erqiang Hu <13766876214@163.com> VignetteBuilder: knitr BugReports: https://github.com/huerqiang/HDO.db/issues source.ver: src/contrib/HDO.db_1.0.0.tar.gz vignettes: vignettes/HDO.db/inst/doc/HDO_vignette.html vignetteTitles: HDO_vignette hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/HDO.db/inst/doc/HDO_vignette.R dependencyCount: 46 Package: hgfocus.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a6bee48c0aa947d3c7d25ef2c5a4d485 NeedsCompilation: no Title: Affymetrix Affymetrix HG-Focus Array annotation data (chip hgfocus) Description: Affymetrix Affymetrix HG-Focus Array annotation data (chip hgfocus) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgfocus Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgfocus.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgfocuscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 9883e53bfd9ddb9ad5f3a9c2e47bbd2c NeedsCompilation: no Title: hgfocuscdf Description: A package containing an environment representing the HG-Focus.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hgfocus, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgfocuscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: affycoretools, arrays dependencyCount: 46 Package: hgfocusprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 0a399ed276b89e3d80946b6cbbf167b4 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgfocus Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-Focus\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgfocus, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgfocusprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: affyILM dependencyCount: 46 Package: hgu133a.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 97675c27b13624bdfd760460dbca6bf0 NeedsCompilation: no Title: Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a) Description: Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu133a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu133a.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: KEGGlincs, Neve2006 importsMe: DrugVsDisease, PADOG, phenoTest suggestsMe: AIMS, altcdfenvs, gage, geneplotter, goTools, MGFM, MineICA, PCAtools, safe, sampleClassifier, topGO, metaMA dependencyCount: 47 Package: hgu133a2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: e3bf9c5c9941f5f378cbc3dbeb9919ee NeedsCompilation: no Title: Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2) Description: Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu133a2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu133a2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: DrugVsDisease suggestsMe: RUVcorr dependencyCount: 47 Package: hgu133a2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 566bc70f0bb94a376bf88f191a2f067e NeedsCompilation: no Title: hgu133a2cdf Description: A package containing an environment representing the HG-U133A_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu133a2, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133a2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu133a2frmavecs Version: 1.2.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: 4bf8cf5cbaf288ce0a9618d764c87044 NeedsCompilation: no Title: Vectors used by frma for microarrays of type hgu133a2 Description: This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0. biocViews: AnnotationData, AffymetrixChip, hgu133a2, Homo_sapiens, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/hgu133a2frmavecs_1.2.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: hgu133a2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 736b43cfc37a297ccc0d30cb75fcc95a NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu133a2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu133a2, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133a2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu133acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: d3e0e22b2d3943d26c94e7c01b91035c NeedsCompilation: no Title: hgu133acdf Description: A package containing an environment representing the HG-U133A.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu133a, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: AffyRNADegradation, altcdfenvs, frmaTools, affydata, AmpAffyExample dependencyCount: 46 Package: hgu133afrmavecs Version: 1.5.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: 85034ab02491f5b3699d210cef50812d NeedsCompilation: no Title: Vectors used by frma for microarrays of type hgu133a Description: This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0. biocViews: AnnotationData, AffymetrixChip, hgu133a, Homo_sapiens, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/hgu133afrmavecs_1.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: frma, frmaTools dependencyCount: 0 Package: hgu133aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 76cd9c54b0a8a0240dbb0fc758959d62 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu133a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu133a, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: altcdfenvs, Biostrings, frmaTools dependencyCount: 46 Package: hgu133atagcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 01f8809e0deb5b83f3f0decec881a1d8 NeedsCompilation: no Title: hgu133atagcdf Description: A package containing an environment representing the HG-U133A_tag.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu133atag, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133atagcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: arrayMvout, frmaTools dependencyCount: 46 Package: hgu133atagprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 97aeaf9ac9450369cf030581b8ec5a53 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu133atag Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_tag\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu133atag, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133atagprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: frmaTools dependencyCount: 46 Package: hgu133b.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: ff7930c99300c1022fde06ebe5c4a8cc NeedsCompilation: no Title: Affymetrix Affymetrix HG-U133B Array annotation data (chip hgu133b) Description: Affymetrix Affymetrix HG-U133B Array annotation data (chip hgu133b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu133b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu133b.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgu133bcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 649aaa5e6275be6ee4d24d80ca390ea5 NeedsCompilation: no Title: hgu133bcdf Description: A package containing an environment representing the HG-U133B.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu133b, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133bcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu133bprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 203750510e51450e1267e08c241151c4 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu133b Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133B\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu133b, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133bprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu133plus2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 459fcf4880a9eaa25b373c5635fede3d NeedsCompilation: no Title: Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2) Description: Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu133plus2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu133plus2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: humanStemCell importsMe: DrugVsDisease, PADOG, DeSousa2013 suggestsMe: BioQC, epivizr, epivizrChart, epivizrData, graphite, KEGGgraph, rtracklayer, sampleClassifier, SPIA, PREDAsampledata, rheumaticConditionWOLLBOLD, metaMA, RCPA dependencyCount: 47 Package: hgu133plus2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 284fef2f0b777d7b53451538ddd53de3 NeedsCompilation: no Title: hgu133plus2cdf Description: A package containing an environment representing the HG-U133_Plus_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu133plus2, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133plus2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: frmaTools, PREDAsampledata dependencyCount: 46 Package: hgu133plus2frmavecs Version: 1.5.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: a4781cbcccc1ee17dfd16259f1c7bebc NeedsCompilation: no Title: Vectors used by frma for microarrays of type hgu133plus2 Description: This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0. biocViews: AnnotationData, AffymetrixChip, hgu133plus2, Homo_sapiens, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/hgu133plus2frmavecs_1.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: DeSousa2013 dependencyCount: 0 Package: hgu133plus2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 7a244787a0269bc72732ac3d830f34dd NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu133plus2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133\_Plus\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu133plus2, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu133plus2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: frmaTools dependencyCount: 46 Package: hgu219.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a4a0fd2ac170a75d8b17618615fcd7a0 NeedsCompilation: no Title: Affymetrix Human Genome 219 Plate annotation data (chip hgu219) Description: Affymetrix Human Genome 219 Plate annotation data (chip hgu219) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu219 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu219.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgu219cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 157a4280a9de960902260ab18f678949 NeedsCompilation: no Title: hgu219cdf Description: A package containing an environment representing the HG-U219.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu219, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu219cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu219probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: c5bb2f7b2e0f8fa89e6a30befaee6497 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu219 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U219\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu219, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu219probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95a.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b228ec0eded3ba9bccf033c2fff8f7b8 NeedsCompilation: no Title: Affymetrix Affymetrix HG_U95A Array annotation data (chip hgu95a) Description: Affymetrix Affymetrix HG_U95A Array annotation data (chip hgu95a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu95a.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: GSVAdata dependencyCount: 47 Package: hgu95acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: afc999d77b1532154d45911ad15a5897 NeedsCompilation: no Title: hgu95acdf Description: A package containing an environment representing the HG_U95A.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu95a, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: altcdfenvs dependencyCount: 46 Package: hgu95aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 67d94ecdc1889acc19dafd19d26700a2 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu95a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG\_U95A\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu95a, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95av2 Version: 2.2.0 Depends: R (>= 2.4.0) License: The Artistic License, Version 2.0 MD5sum: b92585c0f43e91bd1abd234b9465a6a7 NeedsCompilation: no Title: Affymetrix Human Genome U95 Set Annotation Data (hgu95av2) Description: Affymetrix Human Genome U95 Set annotation data (hgu95av2) assembled using data from public data repositories biocViews: AnnotationData, Homo_sapiens, AffymetrixChip, hgu95av2 Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald Maintainer: Biocore Data Team organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu95av2_2.2.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: BicARE, tkWidgets dependencyCount: 0 Package: hgu95av2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 0ada3f3c2507992b94d2daa7de8b7fbf NeedsCompilation: no Title: Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2) Description: Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95av2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu95av2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: keggorthology suggestsMe: a4, a4Base, a4Classif, a4Preproc, affycoretools, annaffy, annotate, AnnotationDbi, AnnotationForge, autonomics, biocGraph, BioNet, Category, categoryCompare, ChromHeatMap, clipper, EnrichmentBrowser, esetVis, genefilter, geneplotter, GenomicRanges, GOstats, graphite, GSAR, GSEABase, GSEAlm, GSRI, Heatplus, idiogram, MLInterfaces, npGSEA, pathRender, ReportingTools, SNAGEE, SummarizedExperiment, topGO, estrogen, SNAGEEdata, metaMA dependencyCount: 47 Package: hgu95av2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 026bae2f76433593f75ca6c79bc9a9d0 NeedsCompilation: no Title: hgu95av2cdf Description: A package containing an environment representing the HG_U95Av2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu95av2, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95av2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: affy, affyContam, affyPLM, Biostrings, gcrma, maskBAD, mimager, TurboNorm, vsn, affydata, ChimpHumanBrainData, estrogen, RobLoxBioC dependencyCount: 46 Package: hgu95av2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: d3efb56f7e7a264b633fac787a5a2b95 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu95av2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG\_U95Av2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu95av2, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95av2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: Biostrings, BSgenome, gcrma, GenomicRanges, maskBAD dependencyCount: 46 Package: hgu95b.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 12334c263cfd9f7dc835762b4661edc1 NeedsCompilation: no Title: Affymetrix Affymetrix HG_U95B Array annotation data (chip hgu95b) Description: Affymetrix Affymetrix HG_U95B Array annotation data (chip hgu95b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu95b.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgu95bcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: e6e56b7a107bb2df25b3c25a8191385d NeedsCompilation: no Title: hgu95bcdf Description: A package containing an environment representing the HG_U95B.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu95b, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95bcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95bprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 60dcb57fd402dc24d53ef9390c893cfc NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu95b Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95B\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu95b, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95bprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95c.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 680cdfc3e63853ace2ec47caa00ded36 NeedsCompilation: no Title: Affymetrix Affymetrix HG_U95C Array annotation data (chip hgu95c) Description: Affymetrix Affymetrix HG_U95C Array annotation data (chip hgu95c) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95c Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu95c.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgu95ccdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 976151eac05c320aec7a24397a6b5806 NeedsCompilation: no Title: hgu95ccdf Description: A package containing an environment representing the HG_U95C.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu95c, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95ccdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95cprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 3fe935a52c70105dc7a214174c946455 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu95c Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95C\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu95c, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95cprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95d.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 90ecf383640f6ab7314fa1babcdd5a0b NeedsCompilation: no Title: Affymetrix Affymetrix HG_U95D Array annotation data (chip hgu95d) Description: Affymetrix Affymetrix HG_U95D Array annotation data (chip hgu95d) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95d Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu95d.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgu95dcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 36e11ff001b1bec3f34ba7c93132ad6f NeedsCompilation: no Title: hgu95dcdf Description: A package containing an environment representing the HG_U95D.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu95d, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95dcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95dprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 165ce5029f49fc515b9ee0e6a6a29cb5 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu95d Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95D\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu95d, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95dprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95e.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 116bd146279d19d50a7233bc61c22104 NeedsCompilation: no Title: Affymetrix Affymetrix HG_U95E Array annotation data (chip hgu95e) Description: Affymetrix Affymetrix HG_U95E Array annotation data (chip hgu95e) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hgu95e Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hgu95e.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgu95ecdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: fa27cfff62a38fc51640d797bd628105 NeedsCompilation: no Title: hgu95ecdf Description: A package containing an environment representing the HG_U95E.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hgu95e, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95ecdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hgu95eprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 9e5407ab80c5bbb4065484be0b9c6191 NeedsCompilation: no Title: Probe sequence data for microarrays of type hgu95e Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95E\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hgu95e, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hgu95eprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hguatlas13k.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: ab9ffe1a1de44c0f938129f193e7fb63 NeedsCompilation: no Title: Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) Description: Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) assembled using data from public repositories biocViews: ChipDb, AnnotationData, ClontechChip, Homo_sapiens, hguatlas13k Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Clontech source.ver: src/contrib/hguatlas13k.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgubeta7.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 1b8b065f95d2089985f59f22dcabc824 NeedsCompilation: no Title: Unknown annotation data (chip hgubeta7) Description: Unknown annotation data (chip hgubeta7) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CustomArray, Homo_sapiens Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Unknown source.ver: src/contrib/hgubeta7.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hguDKFZ31.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: fa3ba493cebdac4253dea8fe5d58452b NeedsCompilation: no Title: Unknown annotation data (chip hguDKFZ31) Description: Unknown annotation data (chip hguDKFZ31) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CustomArray, Homo_sapiens Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Unknown source.ver: src/contrib/hguDKFZ31.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgug4100a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b7856928278a77d71f963410ea4f2376 NeedsCompilation: no Title: Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a) Description: Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4100a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Agilent source.ver: src/contrib/hgug4100a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgug4101a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: e4731217efbffd05d3ee7eec68ce0aa0 NeedsCompilation: no Title: Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) Description: Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4101a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Agilent source.ver: src/contrib/hgug4101a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgug4110b.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a9edcdbc121f22d4dec335a64598ff0e NeedsCompilation: no Title: Agilent Human 1A (V2) annotation data (chip hgug4110b) Description: Agilent Human 1A (V2) annotation data (chip hgug4110b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4110b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Agilent source.ver: src/contrib/hgug4110b.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgug4111a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a5f2c3b463915fa1ab0ca21e6b0f5840 NeedsCompilation: no Title: Agilent Human 1B annotation data (chip hgug4111a) Description: Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4111a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Agilent source.ver: src/contrib/hgug4111a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hgug4112a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 67ecf8c887e2ebe1941cc51d0f5fb468 NeedsCompilation: no Title: Agilent "Human Genome, Whole" annotation data (chip hgug4112a) Description: Agilent "Human Genome, Whole" annotation data (chip hgug4112a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, hgug4112a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Agilent source.ver: src/contrib/hgug4112a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: RmiR.Hs.miRNA, RmiR.hsa dependencyCount: 47 Package: hgug4845a.db Version: 0.0.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.17.27), org.Hs.eg.db (>= 2.7.1) Imports: methods, AnnotationDbi Suggests: annotate License: Artistic-2.0 MD5sum: 46133d7bcb6d8c24c026304e8ddd150d NeedsCompilation: no Title: agilent AMADID 026652 annotation data (chip hgug4845a) Description: agilent AMADID 026652 annotation data (chip hgug4845a) assembled using data from public repositories biocViews: AnnotationData, agilentChip, Homo_sapiens, hgug4845a Author: Ralph Scherer Maintainer: Ralph Scherer organism: Homo sapiens manufacturer: agilent source.ver: src/contrib/hgug4845a.db_0.0.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hguqiagenv3.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 91ebb82e773ff799befdb8921b38e90e NeedsCompilation: no Title: Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3) Description: Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3) assembled using data from public repositories biocViews: ChipDb, AnnotationData, QiagenChip, Homo_sapiens, hguqiagenv3 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Qiagen source.ver: src/contrib/hguqiagenv3.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hi16cod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Hs.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: abdc77937e8d37fa5468691376ceb6a5 NeedsCompilation: no Title: Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod) Description: Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Homo_sapiens, hi16cod Author: Diego Diez Maintainer: Diego Diez organism: Homo sapiens manufacturer: Codelink source.ver: src/contrib/hi16cod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hivprtplus2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 143d9c2f5f328786bae7bb8dc4daf261 NeedsCompilation: no Title: hivprtplus2cdf Description: A package containing an environment representing the HIV PRTPlus 2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hivprtplus2, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hivprtplus2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: Homo.sapiens Version: 1.3.1 Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi (>= 1.11.39), GenomicFeatures, GO.db, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene Imports: GenomicFeatures, AnnotationDbi License: Artistic-2.0 MD5sum: 653b60cfcdaefd171729115cd629b585 NeedsCompilation: no Title: Annotation package for the Homo.sapiens object Description: Contains the Homo.sapiens object to access data from several related annotation packages. biocViews: AnnotationData, Genetics, OrganismDb, Homo_sapiens Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/Homo.sapiens_1.3.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: erma, GSReg, annotation, liftOver importsMe: appreci8R, biscuiteer, epimutacions, iNETgrate, uncoverappLib suggestsMe: AnnotationForge, epivizrChart, GenomicFiles, ggbio, GOfuncR, methylumi, NanoMethViz, OrganismDbi, RTCGAToolbox, SARC, scTensor, emtdata dependencyCount: 109 Package: hpAnnot Version: 1.1.0 Depends: R (>= 3.5) Suggests: BiocStyle, knitr, rmarkdown License: GPL-2 MD5sum: fbc94a00b0f33b41bc5ff53fbe060663 NeedsCompilation: no Title: Anotation package for Hipathia package Description: Package containing example and annotation data for Hipathia package. Hipathia is a method for the computation of signal transduction along signaling pathways from transcriptomic data. The method is based on an iterative algorithm which is able to compute the signal intensity passing through the nodes of a network by taking into account the level of expression of each gene and the intensity of the signal arriving to it. It also provides a new approach to functional analysis allowing to compute the signal arriving to the functions annotated to each pathway. Hipathia depends on this package to be functional. biocViews: FunctionalAnnotation, PackageType, CustomDBSchema Author: Marta R. Hidalgo [aut, cre], José Carbonell-Caballero [ctb], Francisco Salavert [ctb], Alicia Amadoz [ctb], Çankut Cubuk [ctb], Joaquin Dopazo [ctb] Maintainer: Marta R. Hidalgo VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/hpAnnot git_branch: master git_last_commit: 640c19e git_last_commit_date: 2021-02-09 Date/Publication: 2021-10-13 source.ver: src/contrib/hpAnnot_1.1.0.tar.gz vignettes: vignettes/hpAnnot/inst/doc/hpAnnot-vignette.pdf vignetteTitles: hpAnnot hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/hpAnnot/inst/doc/hpAnnot-vignette.R dependencyCount: 0 Package: HPO.db Version: 0.99.2 Depends: R (>= 4.3.0) Imports: AnnotationDbi, AnnotationHub, BiocFileCache, DBI, methods, utils Suggests: rmarkdown, knitr, testthat (>= 3.0.0) License: Artistic-2.0 MD5sum: 977cfb31ff344c58fd2dd0a2c6b765ab NeedsCompilation: no Title: A set of annotation maps describing the entire Human Phenotype Ontology Description: Human Phenotype Ontology (HPO) was developed to create a consistent description of gene products with disease perspectives, and is essential for supporting functional genomics in disease context. Accurate disease descriptions can discover new relationships between genes and disease, and new functions for previous uncharacteried genes and alleles.We have developed the [DOSE](https://bioconductor.org/packages/DOSE/) package for semantic similarity analysis and disease enrichment analysis, and `DOSE` import an Bioconductor package 'DO.db' to get the relationship(such as parent and child) between MPO terms. But `DO.db` hasn't been updated for years, and a lot of semantic information is [missing](https://github.com/YuLab-SMU/DOSE/issues/57). So we developed the new package `HPO.db` for Human Human Phenotype Ontology annotation. biocViews: AnnotationData, FunctionalAnnotation, AnnotationHub Author: Erqiang Hu [aut, cre] () Maintainer: Erqiang Hu <13766876214@163.com> VignetteBuilder: knitr BugReports: https://github.com/YuLab-SMU/HPO.db/issues git_url: https://git.bioconductor.org/packages/HPO.db git_branch: devel git_last_commit: 72ed6ba git_last_commit_date: 2023-06-22 Date/Publication: 2023-06-28 source.ver: src/contrib/HPO.db_0.99.2.tar.gz vignettes: vignettes/HPO.db/inst/doc/HPO_vignette.html vignetteTitles: HPO_vignette hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/HPO.db/inst/doc/HPO_vignette.R dependencyCount: 66 Package: hs25kresogen.db Version: 2.5.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.13.19), org.Hs.eg.db (>= 2.5.0) Imports: methods, AnnotationDbi Suggests: annotate License: Artistic-2.0 MD5sum: a3800d072ce0e5f6f5d8299538b99cca NeedsCompilation: no Title: RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) Description: RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) assembled using data from public repositories biocViews: AnnotationData, RNG_MRCChip, Homo_sapiens, hs25kresogen Author: AltraBio Maintainer: Simon de Bernard organism: Homo sapiens manufacturer: RNG_MRC source.ver: src/contrib/hs25kresogen.db_2.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: Hs6UG171.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 7aaf8a2441941f70247275c93735ed3b NeedsCompilation: no Title: A package containing metadata for Hs6UG171 arrays Description: A package containing metadata for Hs6UG171 arrays assembled using data from public repositories biocViews: ChipDb, AnnotationData, CUSTOMChip, Homo_sapiens, Hs6UG171 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: CUSTOM source.ver: src/contrib/Hs6UG171.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: HsAgilentDesign026652.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: dcd2c748bf9d7c002611cd5cf2ff38c0 NeedsCompilation: no Title: Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) Description: Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Homo_sapiens, HsAgilentDesign026652 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Agilent source.ver: src/contrib/HsAgilentDesign026652.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: Hspec Version: 0.99.1 Depends: R (>= 2.10), utils Imports: AnnotationDbi License: LGPL MD5sum: 0ade3e3147c8f0086e9be2312cccdfeb NeedsCompilation: no Title: Hspec Description: A package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, Hspec, Homo_sapiens Author: Sara Erika Bellomo , Claudio Isella, Enzo Medico Maintainer: Bellomo S.E. source.ver: src/contrib/Hspec_0.99.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hspeccdf Version: 0.99.1 Depends: R (>= 2.10), utils Imports: AnnotationDbi License: LGPL MD5sum: 89f81adf91094710558ce6aec79fc7fd NeedsCompilation: no Title: hspeccdf Description: A package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, Hspec, Homo_sapiens Author: Sara Erika Bellomo , Claudio Isella, Enzo Medico Maintainer: Bellomo S.E. source.ver: src/contrib/hspeccdf_0.99.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hta20probeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 8cc15bb71f3c2776015e55a2d7df2c2f NeedsCompilation: no Title: Affymetrix hta20 annotation data (chip hta20probeset) Description: Affymetrix hta20 annotation data (chip hta20probeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hta20probeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hta20probeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hta20transcriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 9debbc190cc5f9f0ad97fbc452fe7025 NeedsCompilation: no Title: Affymetrix hta20 annotation data (chip hta20transcriptcluster) Description: Affymetrix hta20 annotation data (chip hta20transcriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hta20transcriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hta20transcriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hthgu133a.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 769ed088760102b61edfb73454d4c642 NeedsCompilation: no Title: Affymetrix Affymetrix HT_HG-U133A Array annotation data (chip hthgu133a) Description: Affymetrix Affymetrix HT_HG-U133A Array annotation data (chip hthgu133a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hthgu133a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hthgu133a.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hthgu133acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: b92e543867f1f0c08bfa9299e123d608 NeedsCompilation: no Title: hthgu133acdf Description: A package containing an environment representing the HT_HG-U133A.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hthgu133a, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hthgu133acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hthgu133afrmavecs Version: 1.3.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: be3f3d67a94dca3b080c184fba5ff6d8 NeedsCompilation: no Title: Vectors used by frma for microarrays of type hthgu133a Description: This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0. biocViews: AnnotationData, AffymetrixChip, hthgu133a, Homo_sapiens, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/hthgu133afrmavecs_1.3.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: hthgu133aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: cdc17ea670719f055ee75bea1415c754 NeedsCompilation: no Title: Probe sequence data for microarrays of type hthgu133a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_HG-U133A\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hthgu133a, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hthgu133aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hthgu133b.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 8501401a7385e28173ea7b60aa3bf3d2 NeedsCompilation: no Title: Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b) Description: Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hthgu133b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hthgu133b.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hthgu133bcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 935ae53fb168d9c7890d71020ef4c366 NeedsCompilation: no Title: hthgu133bcdf Description: A package containing an environment representing the HT_HG-U133B.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hthgu133b, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hthgu133bcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hthgu133bprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 8a2e306638a81fdec3b10a014c04c6b9 NeedsCompilation: no Title: Probe sequence data for microarrays of type hthgu133b Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_HG-U133B\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hthgu133b, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hthgu133bprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hthgu133plusa.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 477cb32e1d8eb6da894486ad810b4232 NeedsCompilation: no Title: Affymetrix Affymetrix HT_HG-U133_Plus_A Array annotation data (chip hthgu133plusa) Description: Affymetrix Affymetrix HT_HG-U133_Plus_A Array annotation data (chip hthgu133plusa) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hthgu133plusa Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hthgu133plusa.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hthgu133plusb.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: f3214792ba174598b0559937f46de937 NeedsCompilation: no Title: Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb) Description: Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hthgu133plusb Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hthgu133plusb.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hthgu133pluspm.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b0b3cb0174608d5705ae6c80dac02e3c NeedsCompilation: no Title: Affymetrix Affymetrix HT_HG-U133_Plus_PM Array annotation data (chip hthgu133pluspm) Description: Affymetrix Affymetrix HT_HG-U133_Plus_PM Array annotation data (chip hthgu133pluspm) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hthgu133pluspm Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hthgu133pluspm.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hthgu133pluspmcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 56d15101d59decac7811caa15b349a9c NeedsCompilation: no Title: hthgu133pluspmcdf Description: A package containing an environment representing the HT_HG-U133_Plus_PM.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hthgu133pluspm, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hthgu133pluspmcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hthgu133pluspmprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 74713e822a689007892d0eb92dbd456b NeedsCompilation: no Title: Probe sequence data for microarrays of type hthgu133pluspm Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_HG-U133\_Plus\_PM\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hthgu133pluspm, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hthgu133pluspmprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htmg430a.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 171e457946a6b485b2ebd928b233abb3 NeedsCompilation: no Title: Affymetrix Affymetrix HT_MG-430A Array annotation data (chip htmg430a) Description: Affymetrix Affymetrix HT_MG-430A Array annotation data (chip htmg430a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, htmg430a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/htmg430a.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: htmg430acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: aef7a3c3af7d2624ee6fc6f2d22472e2 NeedsCompilation: no Title: htmg430acdf Description: A package containing an environment representing the HT_MG-430A.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, htmg430a, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htmg430acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htmg430aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: e50cc49b8887b6ef8ee1152ec12d5010 NeedsCompilation: no Title: Probe sequence data for microarrays of type htmg430a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430A\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, htmg430a, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htmg430aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htmg430b.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 70849a636e972a9be604a3320d3bd814 NeedsCompilation: no Title: Affymetrix Affymetrix HT_MG-430B Array annotation data (chip htmg430b) Description: Affymetrix Affymetrix HT_MG-430B Array annotation data (chip htmg430b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, htmg430b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/htmg430b.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: htmg430bcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 53cc1408504a5f07b5655aa46b969157 NeedsCompilation: no Title: htmg430bcdf Description: A package containing an environment representing the HT_MG-430B.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, htmg430b, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htmg430bcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htmg430bprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: f0e3eb56925d786762dee0c2dc82b530 NeedsCompilation: no Title: Probe sequence data for microarrays of type htmg430b Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430B\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, htmg430b, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htmg430bprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htmg430pm.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: f89738ce2e33d1c626aa2d15cd28a49b NeedsCompilation: no Title: Affymetrix Affymetrix HT_MG-430_PM Array annotation data (chip htmg430pm) Description: Affymetrix Affymetrix HT_MG-430_PM Array annotation data (chip htmg430pm) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, htmg430pm Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/htmg430pm.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: htmg430pmcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 016a54b47adbbed7db989787646a0084 NeedsCompilation: no Title: htmg430pmcdf Description: A package containing an environment representing the HT_MG-430_PM.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, htmg430pm, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htmg430pmcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htmg430pmprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: f0e053fcc0ca4b5f8c539fc0a3fcb076 NeedsCompilation: no Title: Probe sequence data for microarrays of type htmg430pm Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430\_PM\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, htmg430pm, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htmg430pmprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htrat230pm.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 46ed50806c568bf269fe4c51d3df3955 NeedsCompilation: no Title: Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm) Description: Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, htrat230pm Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/htrat230pm.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: htrat230pmcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: c6683d16e8aacccd326f7a7eebb79b98 NeedsCompilation: no Title: htrat230pmcdf Description: A package containing an environment representing the HT_Rat230_PM.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, htrat230pm, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htrat230pmcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htrat230pmprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: e4deeca2dc406367ac4a347e370267cf NeedsCompilation: no Title: Probe sequence data for microarrays of type htrat230pm Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_Rat230\_PM\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, htrat230pm, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htrat230pmprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htratfocus.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 88be90edb1acb31faedde0b66b27a150 NeedsCompilation: no Title: Affymetrix Affymetrix HT_Rat-Focus Array annotation data (chip htratfocus) Description: Affymetrix Affymetrix HT_Rat-Focus Array annotation data (chip htratfocus) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, htratfocus Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/htratfocus.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: htratfocuscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 04b4952f7d8b607a7eb0f779c08c57dc NeedsCompilation: no Title: htratfocuscdf Description: A package containing an environment representing the HT_Rat-Focus.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, htratfocus, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htratfocuscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: htratfocusprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 26a0963d8aff314a4a1f2c47e9147a8a NeedsCompilation: no Title: Probe sequence data for microarrays of type htratfocus Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_Rat-Focus\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, htratfocus, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/htratfocusprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu35ksuba.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 4c2306a80f26bacb6172e84c896ef911 NeedsCompilation: no Title: Affymetrix Affymetrix Hu35KsubA Array annotation data (chip hu35ksuba) Description: Affymetrix Affymetrix Hu35KsubA Array annotation data (chip hu35ksuba) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hu35ksuba Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hu35ksuba.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hu35ksubacdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: c8b82c4755eb62818ca0dbf22de5d25e NeedsCompilation: no Title: hu35ksubacdf Description: A package containing an environment representing the Hu35KsubA.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu35ksuba, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu35ksubacdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu35ksubaprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 49bd19ec3b6404211f2e410e473fa644 NeedsCompilation: no Title: Probe sequence data for microarrays of type hu35ksuba Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubA\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hu35ksuba, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu35ksubaprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu35ksubb.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b82ece4860eddff8010faecaae802312 NeedsCompilation: no Title: Affymetrix Affymetrix Hu35KsubB Array annotation data (chip hu35ksubb) Description: Affymetrix Affymetrix Hu35KsubB Array annotation data (chip hu35ksubb) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hu35ksubb Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hu35ksubb.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hu35ksubbcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: d873b6c521e926b331f799baf10a4e13 NeedsCompilation: no Title: hu35ksubbcdf Description: A package containing an environment representing the Hu35KsubB.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu35ksubb, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu35ksubbcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu35ksubbprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 0a63051d0faf38a56f17d5865cbed9b1 NeedsCompilation: no Title: Probe sequence data for microarrays of type hu35ksubb Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubB\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hu35ksubb, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu35ksubbprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu35ksubc.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 57e60b8d025e0e8cf7ac2b355111cf2d NeedsCompilation: no Title: Affymetrix Affymetrix Hu35KsubC Array annotation data (chip hu35ksubc) Description: Affymetrix Affymetrix Hu35KsubC Array annotation data (chip hu35ksubc) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hu35ksubc Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hu35ksubc.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hu35ksubccdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: de96e69680c5f8747c99d170272d7c3c NeedsCompilation: no Title: hu35ksubccdf Description: A package containing an environment representing the Hu35KsubC.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu35ksubc, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu35ksubccdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu35ksubcprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: b10453ea061b09172192bd21baa9083d NeedsCompilation: no Title: Probe sequence data for microarrays of type hu35ksubc Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubC\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hu35ksubc, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu35ksubcprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu35ksubd.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 5ce6b6ede0f9733fd4dc527a28114327 NeedsCompilation: no Title: Affymetrix Affymetrix Hu35KsubD Array annotation data (chip hu35ksubd) Description: Affymetrix Affymetrix Hu35KsubD Array annotation data (chip hu35ksubd) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hu35ksubd Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hu35ksubd.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hu35ksubdcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 6f6423426969f306fb0d5171e75b5380 NeedsCompilation: no Title: hu35ksubdcdf Description: A package containing an environment representing the Hu35KsubD.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu35ksubd, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu35ksubdcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu35ksubdprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 430a9b8ccd646d8cb06e6c1d750eec23 NeedsCompilation: no Title: Probe sequence data for microarrays of type hu35ksubd Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubD\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hu35ksubd, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu35ksubdprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu6800.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: aa1cb6c107dee6d2ed1929b48aa831e9 NeedsCompilation: no Title: Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800) Description: Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hu6800 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hu6800.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: adSplit, biosigner, cola, geneplotter, GlobalAncova, globaltest, idiogram, MLInterfaces, simplifyEnrichment dependencyCount: 47 Package: hu6800cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: fa2b2ab8f3aba517c63ad2e65873d2f0 NeedsCompilation: no Title: hu6800cdf Description: A package containing an environment representing the Hu6800.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu6800, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu6800cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu6800probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 7a2383bd870cbc0628c210174e911250 NeedsCompilation: no Title: Probe sequence data for microarrays of type hu6800 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu6800\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hu6800, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu6800probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu6800subacdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 9e8ec301e066e400564976cd9750297e NeedsCompilation: no Title: hu6800subacdf Description: A package containing an environment representing the Hu6800subA.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu6800suba, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu6800subacdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu6800subbcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 529aad5e4e73594c8cb66274d7e4adc5 NeedsCompilation: no Title: hu6800subbcdf Description: A package containing an environment representing the Hu6800subB.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu6800subb, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu6800subbcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu6800subccdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 020fe3a6bdf44efbde15432b968433e8 NeedsCompilation: no Title: hu6800subccdf Description: A package containing an environment representing the Hu6800subC.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu6800subc, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu6800subccdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hu6800subdcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 7966c21babb23e18cca4faafc8720f0a NeedsCompilation: no Title: hu6800subdcdf Description: A package containing an environment representing the Hu6800subD.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, hu6800subd, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hu6800subdcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: huex.1.0.st.v2frmavecs Version: 1.1.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: 982935d07b526ff555790e309fe4147e NeedsCompilation: no Title: Vectors used by frma for microarrays of type huex.1.0.st.v2 Description: This package was created by frmaTools version 1.9.2. biocViews: AnnotationData, AffymetrixChip, huex.1.0.st.v2, Homo_sapiens, FRMA Author: Matthew N. McCall , Sameer Chavan , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/huex.1.0.st.v2frmavecs_1.1.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: huex10stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: fda9fc7340aeda2564a76756d2b8d4d3 NeedsCompilation: no Title: Affymetrix huex10 annotation data (chip huex10stprobeset) Description: Affymetrix huex10 annotation data (chip huex10stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, huex10stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/huex10stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: huex10sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 0789a1e8ee4474bd64c2772eab0db247 NeedsCompilation: no Title: Affymetrix huex10 annotation data (chip huex10sttranscriptcluster) Description: Affymetrix huex10 annotation data (chip huex10sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, huex10sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/huex10sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: HuExExonProbesetLocation Version: 1.15.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.7.17) License: LGPL MD5sum: 11bf1b88d9e90711b4064497f611da4f NeedsCompilation: no Title: Probe sequence data for microarrays of type HuEx Description: This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. biocViews: AnnotationData, AffymetrixChip, probe, HuEx, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Raffaele A. Calogero source.ver: src/contrib/HuExExonProbesetLocation_1.15.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: HuExExonProbesetLocationHg18 Version: 0.0.2 Depends: R (>= 1.6), AnnotationDbi (>= 1.8.0) License: LGPL MD5sum: bb00b7f5e4db2b04dca5951aa6bd073e NeedsCompilation: no Title: Exon-level probeset chromosome location for microarrays of type HuEx Description: This package was automatically created by package AnnotationDbi version 1.8.0. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg18. biocViews: AnnotationData, AffymetrixChip, HuEx, Homo_sapiens Author: Raffaele A. Calogero Maintainer: Raffaele A. Calogero source.ver: src/contrib/HuExExonProbesetLocationHg18_0.0.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: HuExExonProbesetLocationHg19 Version: 0.0.3 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.8) License: LGPL MD5sum: 1a3843c95c82dc71a043d902961ba33a NeedsCompilation: no Title: Exon-level probeset chromosome location for microarrays of type HuEx Description: This package was automatically created by package AnnotationDbi version 1.11.8. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg19. biocViews: AnnotationData, AffymetrixChip, HuEx, Homo_sapiens Author: Raffaele A. Calogero Maintainer: Raffaele A. Calogero source.ver: src/contrib/HuExExonProbesetLocationHg19_0.0.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hugene.1.0.st.v1frmavecs Version: 1.1.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: 711a69e6fa6dd3737a90615222416dfc NeedsCompilation: no Title: Vectors used by frma for microarrays of type hugene.1.0.st.v1frmavecs Description: This package was created by frmaTools version 1.13.0. biocViews: AnnotationData, AffymetrixChip, hugene.1.0.st.v1, Homo_sapiens, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/hugene.1.0.st.v1frmavecs_1.1.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: hugene10stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 0a4a87d64564cbec1e4bb1f9e5a67add NeedsCompilation: no Title: Affymetrix hugene10 annotation data (chip hugene10stprobeset) Description: Affymetrix hugene10 annotation data (chip hugene10stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hugene10stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hugene10stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hugene10sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a32fb5729d37e96f157b0a1085dff43e NeedsCompilation: no Title: Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster) Description: Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hugene10sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hugene10sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: maEndToEnd dependencyCount: 47 Package: hugene10stv1cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: f1fb1c7076ac40b9e709f18e645d6181 NeedsCompilation: no Title: hugene10stv1cdf Description: A package containing an environment representing the HuGene-1_0-st-v1.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, hugene10stv1, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hugene10stv1cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hugene10stv1probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 6ed3c17dd026acf008658a5994044c62 NeedsCompilation: no Title: Probe sequence data for microarrays of type hugene10stv1 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HuGene-1\_0-st-v1\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, hugene10stv1, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/hugene10stv1probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: hugene11stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 4d22ec32dedd6c8603d5f545faeb4ba4 NeedsCompilation: no Title: Affymetrix hugene11 annotation data (chip hugene11stprobeset) Description: Affymetrix hugene11 annotation data (chip hugene11stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hugene11stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hugene11stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hugene11sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 7fed70c4bd904655459a41b5667f7c23 NeedsCompilation: no Title: Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster) Description: Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hugene11sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hugene11sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hugene20stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: bf7909fc41a80da59099327a6d9abb57 NeedsCompilation: no Title: Affymetrix hugene20 annotation data (chip hugene20stprobeset) Description: Affymetrix hugene20 annotation data (chip hugene20stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hugene20stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hugene20stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hugene20sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 0b929a3a959662e8a7265f58b81b4e35 NeedsCompilation: no Title: Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster) Description: Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hugene20sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hugene20sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hugene21stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 2b816dca48d0b2e1a946469b8d85d257 NeedsCompilation: no Title: Affymetrix hugene21 annotation data (chip hugene21stprobeset) Description: Affymetrix hugene21 annotation data (chip hugene21stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hugene21stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hugene21stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hugene21sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Hs.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: ca90de6093bbad760abfcf0cfeada830 NeedsCompilation: no Title: Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster) Description: Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, hugene21sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/hugene21sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: human.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 1e484144eaebbc7b654640a105c8dea4 NeedsCompilation: no Title: Base Level Annotation databases for human Description: Base annotation databases for human, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Homo_sapiens Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/human.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: AnnotationForge dependencyCount: 46 Package: human1mduov3bCrlmm Version: 1.0.4 Imports: utils License: Artistic-2.0 MD5sum: 0ff9f1e8bcc6348d6777bbb982ae0325 NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina 1M Duo arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/human1mduov3bCrlmm_1.0.4.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: human1mv1cCrlmm Version: 1.0.3 Imports: utils License: Artistic-2.0 MD5sum: b9f638c7b0ede50cb070f1bae85eb4dc NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata fast genotyping Illumina 1M arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/human1mv1cCrlmm_1.0.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: human370quadv3cCrlmm Version: 1.0.3 Imports: utils License: Artistic-2.0 MD5sum: 33c3ccc3793ed95647418b746a5177f9 NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina 370kQuad arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/human370quadv3cCrlmm_1.0.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: human370v1cCrlmm Version: 1.0.2 Imports: utils License: Artistic-2.0 MD5sum: 9ec4192f533faee2b14484de02548075 NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina 370k arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/human370v1cCrlmm_1.0.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: oligoClasses dependencyCount: 1 Package: human550v3bCrlmm Version: 1.0.4 Imports: utils License: Artistic-2.0 MD5sum: 20e6b008fab5e1084354c87ad50d18a8 NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina 550k arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/human550v3bCrlmm_1.0.4.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: human610quadv1bCrlmm Version: 1.0.3 Imports: utils License: Artistic-2.0 MD5sum: 609cf09410774e084ee6a3286652bb1a NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina 610kQuad arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/human610quadv1bCrlmm_1.0.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: MinimumDistance, VanillaICE dependencyCount: 1 Package: human650v3aCrlmm Version: 1.0.3 Imports: utils License: Artistic-2.0 MD5sum: 4b0de367ccc0f7499dcffe21ef1893c2 NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina 650k arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/human650v3aCrlmm_1.0.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: human660quadv1aCrlmm Version: 1.0.3 Imports: utils License: Artistic-2.0 MD5sum: 5fd2d94a462e150c888f13c5c0975c36 NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina 660kQuad arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/human660quadv1aCrlmm_1.0.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: humanCHRLOC Version: 2.1.6 Depends: R(>= 2.7.0) License: The Artistic License, Version 2.0 MD5sum: 113450c0822000c9b4e8a0141cf4b819 NeedsCompilation: no Title: A data package containing annotation data for humanCHRLOC Description: Annotation data file for humanCHRLOC assembled using data from public data repositories biocViews: FunctionalAnnotation, Homo_sapiens Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald Maintainer: Biocore Data Team organism: Homo sapiens source.ver: src/contrib/humanCHRLOC_2.1.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: annotate dependencyCount: 0 Package: humancytosnp12v2p1hCrlmm Version: 1.0.1 Imports: utils License: Artistic-2.0 MD5sum: edf80245ddb28afb9fbaa6668187bf3a NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina CytoSNP 12 arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/humancytosnp12v2p1hCrlmm_1.0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: humanomni1quadv1bCrlmm Version: 1.0.3 Imports: utils License: Artistic-2.0 MD5sum: e81b2603f37d4cda3f28cd69a7296a23 NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina Omni1 Quad arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/humanomni1quadv1bCrlmm_1.0.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: humanomni25quadv1bCrlmm Version: 1.0.2 Imports: utils License: Artistic-2.0 MD5sum: 2ee1fa7bf712d7f81a167079c975d49f NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina Omni2.5 Quad arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/humanomni25quadv1bCrlmm_1.0.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: humanomni5quadv1bCrlmm Version: 1.0.0 Imports: utils License: Artistic-2.0 MD5sum: 3ac4d6867c3d5590a6308d6edff0912b NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina Omni5 Quad arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/humanomni5quadv1bCrlmm_1.0.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: humanomniexpress12v1bCrlmm Version: 1.0.1 Imports: utils License: Artistic-2.0 MD5sum: abdb730fc230db669e588e024ee7624b NeedsCompilation: no Title: Metadata for fast genotyping with the 'crlmm' package Description: Package with metadata for genotyping Illumina Omni Express 12 arrays using the 'crlmm' package. biocViews: AnnotationData Author: Rafael A Irizarry Maintainer: Matthew Ritchie source.ver: src/contrib/humanomniexpress12v1bCrlmm_1.0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 1 Package: HuO22.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: ddabf6c01f94c1dfd6ab35b40852828a NeedsCompilation: no Title: FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22) Description: FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22) assembled using data from public repositories biocViews: ChipDb, AnnotationData, FHCRC Genomics Shared ResourceChip, Homo_sapiens, HuO22 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: FHCRC Genomics Shared Resource source.ver: src/contrib/HuO22.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: hwgcod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Hs.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: a46bf1a242853bbab26351a11b18030a NeedsCompilation: no Title: Codelink Human Whole Genome Bioarray (~55 000 human genes) annotation data (chip hwgcod) Description: Codelink Human Whole Genome Bioarray (~55 000 human genes) annotation data (chip hwgcod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Homo_sapiens, hwgcod Author: Diego Diez Maintainer: Diego Diez organism: Homo sapiens manufacturer: Codelink source.ver: src/contrib/hwgcod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: IlluminaHumanMethylation27k.db Version: 1.4.8 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.11.9), org.Hs.eg.db (>= 2.4.5) Imports: methods, AnnotationDbi Suggests: annotate License: Artistic-2.0 MD5sum: 70586bda9db01d598723bb439c315367 NeedsCompilation: no Title: Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k) Description: Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k) assembled using data from public repositories biocViews: AnnotationData, IlluminaChip, Homo_sapiens, DNAMethylation Author: Sean Davis Maintainer: Tim Triche, Jr. organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/IlluminaHumanMethylation27k.db_1.4.8.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: IlluminaHumanMethylation27kanno.ilmn12.hg19 Version: 0.6.0 Depends: R (>= 3.3.0), minfi (>= 1.19.15) License: Artistic-2.0 MD5sum: 765851336506120467c2e3cc6beef7ed NeedsCompilation: no Title: Annotation for Illumina's 27k methylation arrays Description: An annotation package for Illumina's EPIC methylation arrays. biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: Jean-Philippe Fortin, Kasper Daniel Hansen Maintainer: Kasper Daniel Hansen source.ver: src/contrib/IlluminaHumanMethylation27kanno.ilmn12.hg19_0.6.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 145 Package: IlluminaHumanMethylation27kmanifest Version: 0.4.0 Depends: R (>= 2.13.0), minfi License: Artistic-2.0 MD5sum: c4cdda637dccf85f193342c7262b02a6 NeedsCompilation: no Title: Annotation for Illumina's 27k methylation arrays Description: Manifest for Illumina's 27k array data biocViews: IlluminaChip, Homo_sapiens, DNAMethylation Author: Kasper Daniel Hansen Maintainer: Kasper Daniel Hansen source.ver: src/contrib/IlluminaHumanMethylation27kmanifest_0.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 145 Package: IlluminaHumanMethylation450kanno.ilmn12.hg19 Version: 0.6.1 Depends: R (>= 3.5.0), minfi (>= 1.19.15) License: Artistic-2.0 MD5sum: aeafc54d887b128ed265fa704a3efa42 NeedsCompilation: no Title: Annotation for Illumina's 450k methylation arrays Description: Manifests and annotation for Illumina's 450k array data. biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: Kasper Daniel Hansen Maintainer: Kasper Daniel Hansen source.ver: src/contrib/IlluminaHumanMethylation450kanno.ilmn12.hg19_0.6.1.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: conumee, missMethyl, wateRmelon, minfiData, methylationArrayAnalysis importsMe: epimutacions, funtooNorm, methylCC, methylGSA, DMRcatedata, FlowSorted.CordBloodCombined.450k, EMAS suggestsMe: bigmelon, coMethDMR, DMRcate, GeoTcgaData, iNETgrate, MEAL, methylumi, minfi, REMP, RnBeads, shinyepico, TCGAutils, FlowSorted.Blood.EPIC dependencyCount: 145 Package: IlluminaHumanMethylation450kmanifest Version: 0.4.0 Depends: R (>= 2.13.0), minfi License: Artistic-2.0 MD5sum: 664d1f5a3892974334faa26757269509 NeedsCompilation: no Title: Annotation for Illumina's 450k methylation arrays Description: Manifest for Illumina's 450k array data biocViews: IlluminaChip, Homo_sapiens, DNAMethylation Author: Kasper Daniel Hansen, Martin Aryee Maintainer: Kasper Daniel Hansen source.ver: src/contrib/IlluminaHumanMethylation450kmanifest_0.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: conumee, skewr, minfiData, methylationArrayAnalysis importsMe: epimutacions, funtooNorm, methylCC, missMethyl suggestsMe: minfi, RnBeads, shinyepico, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HiBED, MLML2R dependencyCount: 145 Package: IlluminaHumanMethylation450kprobe Version: 2.0.6 Depends: R (>= 2.10), AnnotationDbi (>= 1.13.18) License: LGPL MD5sum: 84c31861fcbaddbf2a9c500b8d8d767d NeedsCompilation: no Title: Probe sequence data for microarrays of type IlluminaHumanMethylation450k Description: Probe sequences from Illumina (ftp.illumina.com) for hm450 probes biocViews: AnnotationData, Illumina, Homo_sapiens Author: Tim Triche, Jr. Maintainer: Tim Triche, Jr. source.ver: src/contrib/IlluminaHumanMethylation450kprobe_2.0.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: IlluminaHumanMethylationEPICanno.ilm10b2.hg19 Version: 0.6.0 Depends: R (>= 3.3.0), minfi (>= 1.19.15) License: Artistic-2.0 MD5sum: 6a8e2398a0f930aa7828a1412fb21e88 NeedsCompilation: no Title: Annotation for Illumina's EPIC methylation arrays Description: An annotation package for Illumina's EPIC methylation arrays. biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: Kasper Daniel Hansen [cre, aut] Maintainer: Kasper Daniel Hansen URL: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC BugReports: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues source.ver: src/contrib/IlluminaHumanMethylationEPICanno.ilm10b2.hg19_0.6.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: conumee, minfiDataEPIC importsMe: epimutacions suggestsMe: bigmelon, MEAL, REMP, wateRmelon, FlowSorted.CordBloodCombined.450k dependencyCount: 145 Package: IlluminaHumanMethylationEPICanno.ilm10b3.hg19 Version: 0.6.0 Depends: R (>= 3.3.0), minfi (>= 1.19.15) License: Artistic-2.0 MD5sum: 2dac8e889486386eaea1bb7ce1beea2e NeedsCompilation: no Title: Annotation for Illumina's EPIC methylation arrays Description: An annotation package for Illumina's EPIC methylation arrays. biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: Kasper Daniel Hansen [cre, aut] Maintainer: Kasper Daniel Hansen URL: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC BugReports: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues source.ver: src/contrib/IlluminaHumanMethylationEPICanno.ilm10b3.hg19_0.6.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 145 Package: IlluminaHumanMethylationEPICanno.ilm10b4.hg19 Version: 0.6.0 Depends: R (>= 3.3.0), minfi (>= 1.19.15) License: Artistic-2.0 MD5sum: 2d0c05917bcbf9ba1e354380d4e17a77 NeedsCompilation: no Title: Annotation for Illumina's EPIC methylation arrays Description: An annotation package for Illumina's EPIC methylation arrays. biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: Kasper Daniel Hansen [cre, aut] Maintainer: Kasper Daniel Hansen URL: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC BugReports: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues source.ver: src/contrib/IlluminaHumanMethylationEPICanno.ilm10b4.hg19_0.6.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: missMethyl importsMe: methylGSA, DMRcatedata, FlowSorted.CordBloodCombined.450k, EMAS suggestsMe: coMethDMR, DMRcate, shinyepico, IlluminaHumanMethylationEPICv2anno.20a1.hg38, FlowSorted.Blood.EPIC dependencyCount: 145 Package: IlluminaHumanMethylationEPICmanifest Version: 0.3.0 Depends: R (>= 3.2.0), minfi License: Artistic-2.0 MD5sum: c6b0268de177badfe0b8184002da7e16 NeedsCompilation: no Title: Manifest for Illumina's EPIC methylation arrays Description: A manifest package for Illumina's EPIC methylation arrays. biocViews: IlluminaChip, Homo_sapiens, DNAMethylation Author: Kasper Daniel Hansen [cre, aut] Maintainer: Kasper Daniel Hansen URL: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC BugReports: https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues source.ver: src/contrib/IlluminaHumanMethylationEPICmanifest_0.3.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: conumee, minfiDataEPIC importsMe: epimutacions, missMethyl suggestsMe: shinyepico, wateRmelon, IlluminaHumanMethylationEPICv2manifest, FlowSorted.Blood.EPIC dependencyCount: 145 Package: IlluminaHumanMethylationEPICv2anno.20a1.hg38 Version: 1.0.0 Depends: R (>= 4.2.0), minfi Imports: utils Suggests: knitr, IlluminaHumanMethylationEPICanno.ilm10b4.hg19 License: Artistic-2.0 MD5sum: 8c352dbfcc084a2873a1a56d2fec1928 NeedsCompilation: no Title: Annotation for Illumina's EPIC v2.0 methylation arrays Description: An annotation package for Illumina's EPIC v2.0 methylation arrays. The version 2 covers more than 935K CpG sites in the human genome hg38. It is an update of the original EPIC v1.0 array (i.e., the 850K methylation array). biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: Zuguang Gu [aut, cre] () Maintainer: Zuguang Gu URL: https://www.illumina.com/products/by-type/microarray-kits/infinium-methylation-epic.html VignetteBuilder: knitr source.ver: src/contrib/IlluminaHumanMethylationEPICv2anno.20a1.hg38_1.0.0.tar.gz vignettes: vignettes/IlluminaHumanMethylationEPICv2anno.20a1.hg38/inst/doc/IlluminaHumanMethylationEPICv2anno.20a1.hg38.html vignetteTitles: Use of IlluminaHumanMethylationEPICv2anno.20a1.hg38 hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/IlluminaHumanMethylationEPICv2anno.20a1.hg38/inst/doc/IlluminaHumanMethylationEPICv2anno.20a1.hg38.R dependsOnMe: missMethyl suggestsMe: DMRcate dependencyCount: 145 Package: IlluminaHumanMethylationEPICv2manifest Version: 1.0.0 Depends: R (>= 4.0.0), minfi Imports: utils Suggests: knitr, IlluminaHumanMethylationEPICmanifest, eulerr License: Artistic-2.0 MD5sum: d9480f6b284efa2a0e5205c1d21659bf NeedsCompilation: no Title: Manifest for Illumina's EPIC v2.0 methylation arrays Description: A manifest package for Illumina's EPIC v2.0 methylation arrays. The version 2 covers more than 935K CpG sites in the human genome hg38. It is an update of the original EPIC v1.0 array (i.e., the 850K methylation array). biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: Zuguang Gu [aut, cre] () Maintainer: Zuguang Gu URL: https://www.illumina.com/products/by-type/microarray-kits/infinium-methylation-epic.html VignetteBuilder: knitr source.ver: src/contrib/IlluminaHumanMethylationEPICv2manifest_1.0.0.tar.gz vignettes: vignettes/IlluminaHumanMethylationEPICv2manifest/inst/doc/IlluminaHumanMethylationEPICv2manifest.html vignetteTitles: Use of IlluminaHumanMethylationEPICv2manifest hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/IlluminaHumanMethylationEPICv2manifest/inst/doc/IlluminaHumanMethylationEPICv2manifest.R importsMe: missMethyl dependencyCount: 145 Package: IlluminaHumanMethylationMSAanno.ilm10a1.hg38 Version: 0.1.0 Depends: R (>= 3.5.0), minfi (>= 1.19.15) License: Artistic-2.0 MD5sum: 599474353e02a889ce035971da96b1cf NeedsCompilation: no Title: Annotation for Illumina's MSA methylation arrays Description: An annotation package for Illumina's MSA methylation arrays. biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: James W. MacDonald [cre, aut] Maintainer: James W. MacDonald URL: https://github.com/jmacdon/IlluminaHumanMethylationMSAanno.ilm10a1.hg38 BugReports: https://github.com/jmacdon/IlluminaHumanMethylationMSAanno.ilm10a1.hg38/issues source.ver: src/contrib/IlluminaHumanMethylationMSAanno.ilm10a1.hg38_0.1.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 145 Package: IlluminaHumanMethylationMSAmanifest Version: 0.1.0 Depends: R (>= 4.0.0), minfi Imports: utils Suggests: knitr License: Apache License 2.0 MD5sum: 368378a5311be0e979b059db8fc13820 NeedsCompilation: no Title: Package for MSA Infinium array compatibility with minfi Description: A manifest package for use with Illumina's MSA methylation arrays, compatible with minfi. biocViews: AnnotationData, IlluminaChip, Homo_sapiens Author: c(person("Ev", "Chekalin", role = c("aut", "cre"), email = "echekalin@illumina.com"), person("Bre",'Barnes', role = "aut",email='bbarnes@illumina.com'), person("Max", "Westphal", role = "ctb", email='mwestphal@illumina.com')) Maintainer: James W. MacDonald VignetteBuilder: knitr source.ver: src/contrib/IlluminaHumanMethylationMSAmanifest_0.1.0.tar.gz vignettes: vignettes/IlluminaHumanMethylationMSAmanifest/inst/doc/IlluminaHumanMethylationMSAmanifest.html vignetteTitles: Use of IlluminaHumanMethylationEPICv2manifest hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/IlluminaHumanMethylationMSAmanifest/inst/doc/IlluminaHumanMethylationMSAmanifest.R dependencyCount: 145 Package: illuminaHumanv1.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Hs.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 2c362256b7be2861b8bf6e0d1fe46786 NeedsCompilation: no Title: Illumina HumanWG6v1 annotation data (chip illuminaHumanv1) Description: Illumina HumanWG6v1 annotation data (chip illuminaHumanv1) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens, illuminaHumanv1 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/illuminaHumanv1.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: attract, BeadArrayUseCases dependencyCount: 47 Package: illuminaHumanv2.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Hs.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 006de5f671a9a68fb27a6b6bce39c555 NeedsCompilation: no Title: Illumina HumanWG6v2 annotation data (chip illuminaHumanv2) Description: Illumina HumanWG6v2 annotation data (chip illuminaHumanv2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens, illuminaHumanv2 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/illuminaHumanv2.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: BeadArrayUseCases dependencyCount: 47 Package: illuminaHumanv2BeadID.db Version: 1.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.11.8), org.Hs.eg.db (>= 2.4.5) Imports: methods, AnnotationDbi Suggests: annotate License: Artistic-2.0 MD5sum: b5a2b2deaa9a9b245a141043e7bc5270 NeedsCompilation: no Title: Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID) Description: Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID) assembled using data from public repositories to be used with data summarized from bead-level data with numeric ArrayAddressIDs as keys. Illumina probes with a No match or Bad quality score were removed prior to annotation. See http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html and Barbosa-Morais et al (2010) A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Research. biocViews: AnnotationData, IlluminaChip, Homo_sapiens, illuminaHumanv2BeadID Author: Mark Dunning, Matt Ritchie, Nuno Barbosa-Morais Maintainer: Mark Dunning organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/illuminaHumanv2BeadID.db_1.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: illuminaHumanv3.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Hs.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 7d9e7534f0b60f0e3e7473e545ef373d NeedsCompilation: no Title: Illumina HumanHT12v3 annotation data (chip illuminaHumanv3) Description: Illumina HumanHT12v3 annotation data (chip illuminaHumanv3) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens, illuminaHumanv3 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/illuminaHumanv3.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: beadarray, BeadArrayUseCases, RobLoxBioC dependencyCount: 47 Package: illuminaHumanv4.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Hs.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 42d554559ac0106dc71317ffaf466421 NeedsCompilation: no Title: Illumina HumanHT12v4 annotation data (chip illuminaHumanv4) Description: Illumina HumanHT12v4 annotation data (chip illuminaHumanv4) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens, illuminaHumanv4 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/illuminaHumanv4.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: blima, blimaTestingData dependencyCount: 47 Package: illuminaHumanWGDASLv3.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Hs.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 32e8e24555c16f6d0148438d4a841ab8 NeedsCompilation: no Title: Illumina HumanHT12WGDASLv3 annotation data (chip illuminaHumanWGDASLv3) Description: Illumina HumanHT12WGDASLv3 annotation data (chip illuminaHumanWGDASLv3) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens, illuminaHumanWGDASLv3 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/illuminaHumanWGDASLv3.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: illuminaHumanWGDASLv4.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Hs.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 4cc1f192de838f2b6c1b148706d354ca NeedsCompilation: no Title: Illumina HumanWGDASLv4 annotation data (chip illuminaHumanWGDASLv4) Description: Illumina HumanWGDASLv4 annotation data (chip illuminaHumanWGDASLv4) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens, illuminaHumanWGDASLv4 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/illuminaHumanWGDASLv4.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: illuminaMousev1.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Mm.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 13818c3b9acabe75550492bbe638fc05 NeedsCompilation: no Title: Illumina MouseWG6v1 annotation data (chip illuminaMousev1) Description: Illumina MouseWG6v1 annotation data (chip illuminaMousev1) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Mus_musculus, illuminaMousev1 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Mus musculus manufacturer: Illumina source.ver: src/contrib/illuminaMousev1.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: illuminaMousev1p1.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Mm.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: f6a4af01480a6f8d1d2d9b9b64a2b073 NeedsCompilation: no Title: Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1) Description: Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Mus_musculus, illuminaMousev1p1 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Mus musculus manufacturer: Illumina source.ver: src/contrib/illuminaMousev1p1.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: illuminaMousev2.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Mm.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: fba228a71f264f976d8cdb035861974d NeedsCompilation: no Title: Illumina MouseWG6v2 annotation data (chip illuminaMousev2) Description: Illumina MouseWG6v2 annotation data (chip illuminaMousev2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Mus_musculus, illuminaMousev2 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Mus musculus manufacturer: Illumina source.ver: src/contrib/illuminaMousev2.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: illuminaRatv1.db Version: 1.26.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.29.20), org.Rn.eg.db (>= 3.1.2) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 5de2324d7b96c0cdb3301ef269341aa8 NeedsCompilation: no Title: Illumina Ratv1 annotation data (chip illuminaRatv1) Description: Illumina Ratv1 annotation data (chip illuminaRatv1) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Rattus_norvegicus, illuminaRatv1 Author: Mark Dunning, Andy Lynch, Matthew Eldridge Maintainer: Mark Dunning organism: Rattus norvegicus manufacturer: Illumina source.ver: src/contrib/illuminaRatv1.db_1.26.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: indac.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Dm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: cba72edcf7278033151e0eac077d8ff8 NeedsCompilation: no Title: INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac) Description: INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac) assembled using data from public repositories biocViews: ChipDb, AnnotationData, INDACChip, Drosophila_melanogaster, indac Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster manufacturer: INDAC source.ver: src/contrib/indac.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: JASPAR2018 Version: 1.1.1 Depends: R (>= 3.4.0), methods Suggests: TFBSTools (>= 1.15.6) License: GPL-2 MD5sum: d91fce6ea0dc9fa6a3be6ebc05c1af5d NeedsCompilation: no Title: Data package for JASPAR 2018 Description: Data package for JASPAR 2018. To search this databases, please use the package TFBSTools (>= 1.15.6). biocViews: FunctionalAnnotation Author: Ge Tan Maintainer: Ge Tan URL: http://jaspar.genereg.net/ source.ver: src/contrib/JASPAR2018_1.1.1.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: esATAC, primirTSS suggestsMe: pageRank, TFBSTools dependencyCount: 1 Package: JASPAR2020 Version: 0.99.10 Depends: R (>= 3.6.0), methods Suggests: knitr, rmarkdown, TFBSTools (>= 1.23.1) License: GPL-2 MD5sum: bfcaf41ebf0935b8d146afd37719de2d NeedsCompilation: no Title: Data package for JASPAR database (version 2020) Description: Data package for JASPAR2020. To search this databases, please use the package TFBSTools (>= 1.23.1). biocViews: AnnotationData, FunctionalAnnotation Author: Damir Baranasic Maintainer: Damir Baranasic URL: http://jaspar.genereg.net/ VignetteBuilder: knitr source.ver: src/contrib/JASPAR2020_0.99.10.tar.gz vignettes: vignettes/JASPAR2020/inst/doc/JASPAR2020.html vignetteTitles: JASPAR2020 hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/JASPAR2020/inst/doc/JASPAR2020.R suggestsMe: monaLisa, motifStack dependencyCount: 1 Package: JASPAR2022 Version: 0.99.8 Depends: R (>= 4.1.0), methods, BiocFileCache, utils Suggests: knitr, rmarkdown, BiocStyle, TFBSTools (>= 1.31.2) License: GPL-2 MD5sum: f3ac6c35365f8d8f670adad6e30c3b2f NeedsCompilation: no Title: Data package for JASPAR database (version 2022) Description: JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2). biocViews: AnnotationData, FunctionalAnnotation, AnnotationHub Author: Damir Baranasic [aut, cre] () Maintainer: Damir Baranasic URL: http://jaspar.genereg.net/ VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/JASPAR2022 git_branch: devel git_last_commit: 533a1e0 git_last_commit_date: 2023-11-16 Date/Publication: 2024-02-28 source.ver: src/contrib/JASPAR2022_0.99.8.tar.gz vignettes: vignettes/JASPAR2022/inst/doc/JASPAR2022.html vignetteTitles: JASPAR2022 hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/JASPAR2022/inst/doc/JASPAR2022.R suggestsMe: GRaNIE dependencyCount: 46 Package: JASPAR2024 Version: 0.99.7 Depends: R (>= 4.3.0), methods, BiocFileCache, utils Suggests: knitr, rmarkdown, BiocStyle, RSQLite License: GPL-2 MD5sum: 997e71780374651c850909f338a3bcc2 NeedsCompilation: no Title: Data package for JASPAR database (version 2024) Description: JASPAR (https://jaspar.elixir.no/) is a widely-used open-access database presenting manually curated high-quality and non-redundant DNA-binding profiles for transcription factors (TFs) across taxa. In this 10th release and 20th-anniversary update, the CORE collection has expanded with 329 new profiles. We updated three existing profiles and provided orthogonal support for 72 profiles from the previous release UNVALIDATED collection. Altogether, the JASPAR 2024 update provides a 20 percent increase in CORE profiles from the previous release. A trimming algorithm enhanced profiles by removing low information content flanking base pairs, which were likely uninformative (within the capacity of the PFM models) for TFBS predictions and modelling TF-DNA interactions. This release includes enhanced metadata, featuring a refined classification for plant TFs structural DNA-binding domains. The new JASPAR collections prompt updates to the genomic tracks of predicted TF-binding sites in 8 organisms, with human and mouse tracks available as native tracks in the UCSC Genome browser. All data are available through the JASPAR web interface and programmatically through its API and the updated Bioconductor and pyJASPAR packages. Finally, a new TFBS extraction tool enables users to retrieve predicted JASPAR TFBSs intersecting their genomic regions of interest. biocViews: AnnotationData, FunctionalAnnotation, AnnotationHub Author: Damir Baranasic [aut, cre] (ORCID: ) Maintainer: Damir Baranasic URL: https://jaspar.elixir.no/ VignetteBuilder: knitr BugReports: https://github.com/da-bar/JASPAR2024 git_url: https://git.bioconductor.org/packages/JASPAR2024 git_branch: devel git_last_commit: 3a1e18a git_last_commit_date: 2024-10-31 Date/Publication: 2024-11-13 source.ver: src/contrib/JASPAR2024_0.99.7.tar.gz vignettes: vignettes/JASPAR2024/inst/doc/JASPAR2024.html vignetteTitles: JASPAR2022 hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/JASPAR2024/inst/doc/JASPAR2024.R importsMe: MethReg suggestsMe: GRaNIE, monaLisa dependencyCount: 46 Package: JazaeriMetaData.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 3a154a74ac2acebe3471b039c9d9a4dc NeedsCompilation: no Title: A data package containing annotation data for JazaeriMetaData Description: A data package containing annotation data for JazaeriMetaData assembled using data from public repositories biocViews: ChipDb, AnnotationData, National Cancer InstituteChip, Homo_sapiens, JazaeriMetaData Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: National Cancer Institute source.ver: src/contrib/JazaeriMetaData.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: LAPOINTE.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 434b25ad7411201d8be6bb1a0463b387 NeedsCompilation: no Title: A package containing metadata for LAPOINTE arrays Description: A package containing metadata for LAPOINTE arrays assembled using data from public repositories biocViews: ChipDb, AnnotationData, CUSTOMChip, Homo_sapiens, LAPOINTE Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: CUSTOM source.ver: src/contrib/LAPOINTE.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: LowMACAAnnotation Version: 0.99.3 Depends: R (>= 2.10) Suggests: knitr, rmarkdown License: GPL-3 MD5sum: 9e0d3fe7f30fe48aef9c4387eb5bacfa NeedsCompilation: no Title: LowMACAAnnotation Description: A package containing the data to run LowMACA package. biocViews: FunctionalAnnotation Author: Stefano de Pretis, Giorgio Melloni Maintainer: Stefano de Pretis , Giorgio Melloni VignetteBuilder: knitr source.ver: src/contrib/LowMACAAnnotation_0.99.3.tar.gz vignettes: vignettes/LowMACAAnnotation/inst/doc/LowMACAAnnotation.pdf vignetteTitles: LowMACAAnnotation hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/LowMACAAnnotation/inst/doc/LowMACAAnnotation.R dependencyCount: 0 Package: lumiHumanAll.db Version: 1.22.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.23.25), org.Hs.eg.db (>= 2.10.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: ce7e219b50833ceab203f0bbfb11d917 NeedsCompilation: no Title: Illumina Human Illumina expression annotation data (chip lumiHumanAll) Description: Illumina Human Illumina expression annotation data (chip lumiHumanAll) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Homo_sapiens, lumiHumanAll Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Illumina source.ver: src/contrib/lumiHumanAll.db_1.22.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: MineICA suggestsMe: lumi dependencyCount: 47 Package: lumiHumanIDMapping Version: 1.10.1 Depends: R (>= 2.7.0), lumi (>= 1.7.14), methods, AnnotationDbi (>= 1.13.13) Imports: methods, AnnotationDbi, DBI License: The Artistic License, Version 2.0 MD5sum: 007e5aa2f1596cc08d888ba6dce7148a NeedsCompilation: no Title: Illumina Identifier mapping for Human Description: This package includes mappings information between different types of Illumina IDs of Illumina Human chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Human chips to RefSeq IDs with mapping qualities information. biocViews: AnnotationData, Homo sapiens Author: Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin Maintainer: Gilbert Feng organism: Homo sapiens source.ver: src/contrib/lumiHumanIDMapping_1.10.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: lumi dependencyCount: 166 Package: lumiMouseAll.db Version: 1.22.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.23.25), org.Mm.eg.db (>= 2.10.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 6f12330377aaddc83bfa9c37477b999e NeedsCompilation: no Title: Illumina Mouse Illumina expression annotation data (chip lumiMouseAll) Description: Illumina Mouse Illumina expression annotation data (chip lumiMouseAll) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Mus_musculus, lumiMouseAll Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Illumina source.ver: src/contrib/lumiMouseAll.db_1.22.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: lumiMouseIDMapping Version: 1.10.0 Depends: R (>= 2.7.0), lumi (>= 1.7.14), methods, AnnotationDbi (>= 1.13.13) Imports: methods, AnnotationDbi License: The Artistic License, Version 2.0 MD5sum: 305aba80ebf6ef4c26899302ea9e50e8 NeedsCompilation: no Title: Illumina Identifier mapping for Mouse Description: This package includes mappings information between different types of Illumina IDs of Illumina Mouse chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Mouse chips to RefSeq IDs with mapping qualities information. biocViews: AnnotationData, Mus musculus Author: Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin Maintainer: Gilbert Feng organism: Mus musculus source.ver: src/contrib/lumiMouseIDMapping_1.10.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 166 Package: lumiRatAll.db Version: 1.22.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.23.25), org.Rn.eg.db (>= 2.10.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 65027624574d5e33f18b0a54a54f4be9 NeedsCompilation: no Title: Illumina Rat Illumina expression annotation data (chip lumiRatAll) Description: Illumina Rat Illumina expression annotation data (chip lumiRatAll) assembled using data from public repositories biocViews: ChipDb, AnnotationData, IlluminaChip, Rattus_norvegicus, lumiRatAll Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Illumina source.ver: src/contrib/lumiRatAll.db_1.22.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: lumiRatIDMapping Version: 1.10.0 Depends: R (>= 2.7.0), lumi (>= 1.7.14), methods, AnnotationDbi (>= 1.13.13) Imports: methods, AnnotationDbi License: The Artistic License, Version 2.0 MD5sum: 1122fc25e3fff62678bed36f9d7b5709 NeedsCompilation: no Title: Illumina Identifier mapping for Rat Description: This package includes mappings information between different types of Illumina IDs of Illumina Rat chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Rat chips to RefSeq IDs with mapping qualities information. biocViews: AnnotationData, Rattus norvegicus Author: Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin Maintainer: Gilbert Feng organism: Rattus norvegicus source.ver: src/contrib/lumiRatIDMapping_1.10.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 166 Package: LymphoSeqDB Version: 0.99.2 Depends: R (>= 3.2) License: Artistic-2.0 MD5sum: 22fc0dc2439ef497982a5ffddda1e418 NeedsCompilation: no Title: LymphoSeq annotation databases Description: This package provides annotation databases that support the package LymphoSeq. biocViews: AnnotationData, SequenceAnnotation, GenomicSequence Author: David Coffey Maintainer: David Coffey source.ver: src/contrib/LymphoSeqDB_0.99.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: LymphoSeq dependencyCount: 0 Package: m10kcod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Mm.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 04811628e4b37cd6d24e0b2a17d79ab8 NeedsCompilation: no Title: Codelink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod) Description: Codelink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Mus_musculus, m10kcod Author: Diego Diez Maintainer: Diego Diez organism: Mus musculus manufacturer: Codelink source.ver: src/contrib/m10kcod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: m20kcod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Mm.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: f2f734fb41e1ae4e949abf09687733bf NeedsCompilation: no Title: Codelink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod) Description: Codelink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Mus_musculus, m20kcod Author: Diego Diez Maintainer: Diego Diez organism: Mus musculus manufacturer: Codelink source.ver: src/contrib/m20kcod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: MafDb.1Kgenomes.phase1.GRCh38 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38 License: Artistic-2.0 MD5sum: a20471906a41678ce710879e92d2a9dc NeedsCompilation: no Title: Minor allele frequency data from 1000 Genomes Phase 1 for GRCh38 Description: Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version GRCh38. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/MafDb.1Kgenomes.phase1.GRCh38_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafDb.1Kgenomes.phase1.hs37d5 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37 License: Artistic-2.0 MD5sum: ece6b758ca0e1a8a307b5cd5829671f4 NeedsCompilation: no Title: Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5 Description: Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version hs37d5. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/MafDb.1Kgenomes.phase1.hs37d5_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GenomicScores, VariantFiltering dependencyCount: 102 Package: MafDb.1Kgenomes.phase3.GRCh38 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38 License: Artistic-2.0 MD5sum: ee57d9cb6a1748932407d20b9bffd8a2 NeedsCompilation: no Title: Minor allele frequency data from 1000 Genomes Phase 3 for GRCh38 Description: Store minor allele frequency data from the Phase 3 of the 1000 Genomes Project for the human genome version GRCh38. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/MafDb.1Kgenomes.phase3.GRCh38_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: methrix dependencyCount: 102 Package: MafDb.1Kgenomes.phase3.hs37d5 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37 License: Artistic-2.0 MD5sum: ac3cbbf52eb2026f067a4f42c6654555 NeedsCompilation: no Title: Minor allele frequency data from 1000 Genomes Phase 3 for hs37d5 Description: Store minor allele frequency data from the Phase 3 of the 1000 Genomes Project for the human genome version hs37d5. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/MafDb.1Kgenomes.phase3.hs37d5_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: appreci8R suggestsMe: methrix dependencyCount: 102 Package: MafDb.ExAC.r1.0.GRCh38 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38 License: Artistic-2.0 MD5sum: 303332c918996d8cb3e7b7c74d694dd1 NeedsCompilation: no Title: Minor allele frequency data from ExAC release 1.0 for GRCh38 Description: Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0) for the human genome version GRCh38. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafDb.ExAC.r1.0.GRCh38_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafDb.ExAC.r1.0.hs37d5 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37 License: Artistic-2.0 MD5sum: 4d523554a2b0eb296bada9d33a78eefc NeedsCompilation: no Title: Minor allele frequency data from ExAC release 1.0 for hs37d5 Description: Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0) for the human genome version hs37d5. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafDb.ExAC.r1.0.hs37d5_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: appreci8R dependencyCount: 102 Package: MafDb.ExAC.r1.0.nonTCGA.GRCh38 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38 License: Artistic-2.0 MD5sum: cf447f59cc8b1cd7ca395fd3fe6e4730 NeedsCompilation: no Title: Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for GRCh38 Description: Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version GRCh38. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafDb.ExAC.r1.0.nonTCGA.GRCh38_3.10.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafDb.ExAC.r1.0.nonTCGA.hs37d5 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37 License: Artistic-2.0 MD5sum: da3a699e9776b0b769b3bc1e9fb742f0 NeedsCompilation: no Title: Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for hs37d5 Description: Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version hs37d5. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafDb.ExAC.r1.0.nonTCGA.hs37d5_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafDb.gnomAD.r2.1.GRCh38 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38 License: Artistic-2.0 MD5sum: 0e842b24476aeb834f57f9302a36ea18 NeedsCompilation: no Title: Minor allele frequency data from gnomAD release 2.1 for GRCh38 Description: Store minor allele frequency data from the Genome Aggregation Database (gnomAD release 2.1) for the human genome version GRCh38. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafDb.gnomAD.r2.1.GRCh38_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafDb.gnomAD.r2.1.hs37d5 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37 License: Artistic-2.0 MD5sum: 12221c461930ae1ecfe925943a619d56 NeedsCompilation: no Title: Minor allele frequency data from gnomAD release 2.1 for hs37d5 Description: Store minor allele frequency data from the Genome Aggregation Database (gnomAD release 2.1) for the human genome version hs37d5. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafDb.gnomAD.r2.1.hs37d5_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafDb.gnomADex.r2.1.GRCh38 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38 License: Artistic-2.0 MD5sum: a0ab5b74997669fabb8aecfd9ef7f767 NeedsCompilation: no Title: Minor allele frequency data from gnomAD exomes release 2.1 for GRCh38 Description: Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.1) for the human genome version GRCh38. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafDb.gnomADex.r2.1.GRCh38_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafDb.gnomADex.r2.1.hs37d5 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37 License: Artistic-2.0 MD5sum: 6ca4d742571687a13906d99cea2dbf1f NeedsCompilation: no Title: Minor allele frequency data from gnomAD exomes release 2.1 for hs37d5 Description: Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.1) for the human genome version hs37d5. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafDb.gnomADex.r2.1.hs37d5_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: appreci8R dependencyCount: 102 Package: MafDb.TOPMed.freeze5.hg19 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37 License: Artistic-2.0 MD5sum: 7fdb58eb69187ade189689da58ca6266 NeedsCompilation: no Title: Minor allele frequency data from TOPMed for hg19 Description: Store minor allele frequency data from NHLBI TOPMed for the human genome version hg19. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/MafDb.TOPMed.freeze5.hg19_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafDb.TOPMed.freeze5.hg38 Version: 3.10.0 Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38 License: Artistic-2.0 MD5sum: a3355623fde26b83dfd346a32829f073 NeedsCompilation: no Title: Minor allele frequency data from TOPMed for hg38 Description: Store minor allele frequency data from NHLBI TOPMed for the human genome version hg38. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/MafDb.TOPMed.freeze5.hg38_3.10.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: MafH5.gnomAD.v4.0.GRCh38 Version: 3.19.0 Depends: R (>= 4.0.0), GenomicScores (>= 2.7.2) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome, rhdf5, HDF5Array Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38 License: Artistic-2.0 MD5sum: b3161fbe271e64f6a1e00e6b028be6cb NeedsCompilation: no Title: Minor allele frequency data from gnomAD version 4.0 for GRCh38 Description: Store minor allele frequency data from the Genome Aggregation Database (gnomAD version 4.0) for the human genome version GRCh38. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo Maintainer: Robert Castelo source.ver: src/contrib/MafH5.gnomAD.v4.0.GRCh38_3.19.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GenomicScores dependencyCount: 102 Package: maizecdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: f9dec9e46688d96daf1e07d4e815afb4 NeedsCompilation: no Title: maizecdf Description: A package containing an environment representing the Maize.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, maize, Zea_mays Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/maizecdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: maizeprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: ef7ba47de2346b3552621263399c05d1 NeedsCompilation: no Title: Probe sequence data for microarrays of type maize Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Maize\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, maize, Zea_mays Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/maizeprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: malaria.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: fbcf1c6f5d5a6a2c33ab9a3200c51166 NeedsCompilation: no Title: Base Level Annotation databases for malaria Description: Base annotation databases for malaria, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Plasmodium_falciparum Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Plasmodium falciparum source.ver: src/contrib/malaria.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: medicagocdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 1fbb2e4c070344d18e65f1b3993867db NeedsCompilation: no Title: medicagocdf Description: A package containing an environment representing the Medicago.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, medicago, Medicago_trunculata Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/medicagocdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: medicagoprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 83b9887ad2ed26c704b0ca7115e5838d NeedsCompilation: no Title: Probe sequence data for microarrays of type medicago Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Medicago\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, medicago, Medicago_trunculata Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/medicagoprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: metaboliteIDmapping Version: 1.0.0 Depends: R (>= 4.0.0) Imports: AnnotationHub Suggests: magrittr, graphite, dplyr, tidyr, tibble, rappdirs, XML, readxl, stringr, utils, knitr, sets, R.utils, readr, conflicted, rmarkdown License: GPL-3 MD5sum: bd78ec373ce90fac1a10d2c64c462e77 NeedsCompilation: no Title: Mapping of Metabolite IDs from Different Sources Description: The package provides a comprehensive mapping table of nine different Metabolite ID formats and their common name. The data has been collected and merged from four publicly available source, including HMDB, Comptox Dashboard, ChEBI, and the graphite Bioconductor R package. biocViews: AnnotationHub, CustomDBSchema, FunctionalAnnotation Author: Sebastian Canzler [aut, cre] () Maintainer: Sebastian Canzler URL: https://github.com/yigbt/metaboliteIDmapping VignetteBuilder: knitr source.ver: src/contrib/metaboliteIDmapping_1.0.0.tar.gz vignettes: vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html vignetteTitles: metaboliteIDmapping hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.R importsMe: multiGSEA suggestsMe: amanida dependencyCount: 66 Package: mgu74a.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 9fb75c159c50e2ae316ee5a8abe1a48c NeedsCompilation: no Title: Affymetrix Affymetrix MG_U74A Array annotation data (chip mgu74a) Description: Affymetrix Affymetrix MG_U74A Array annotation data (chip mgu74a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mgu74a.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgu74acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: ed6e86398e51c7b0ddca4431797ecbc0 NeedsCompilation: no Title: mgu74acdf Description: A package containing an environment representing the MG_U74A.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, mgu74a, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 7fea6d44856203e6293e0cd9fe1ad066 NeedsCompilation: no Title: Probe sequence data for microarrays of type mgu74a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74A\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mgu74a, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74av2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 3205856d0c7725acded5238415e907bc NeedsCompilation: no Title: Affymetrix Affymetrix MG_U74Av2 Array annotation data (chip mgu74av2) Description: Affymetrix Affymetrix MG_U74Av2 Array annotation data (chip mgu74av2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74av2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mgu74av2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgu74av2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 35e2abb9fbfd68d90dc32a2faae00c95 NeedsCompilation: no Title: mgu74av2cdf Description: A package containing an environment representing the MG_U74Av2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mgu74av2, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74av2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74av2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: ac540b0e26b14a411740233b02d3e11c NeedsCompilation: no Title: Probe sequence data for microarrays of type mgu74av2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Av2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mgu74av2, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74av2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74b.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 205577a6e41d56910f221ffb940ee25b NeedsCompilation: no Title: Affymetrix Affymetrix MG_U74B Array annotation data (chip mgu74b) Description: Affymetrix Affymetrix MG_U74B Array annotation data (chip mgu74b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mgu74b.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgu74bcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: a1f0f98f29d34a421622447252113e1e NeedsCompilation: no Title: mgu74bcdf Description: A package containing an environment representing the MG_U74B.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, mgu74b, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74bcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74bprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 224d606e6fc87592d387dbaabe5cd353 NeedsCompilation: no Title: Probe sequence data for microarrays of type mgu74b Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74B\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mgu74b, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74bprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74bv2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 4ec0fbed7343f0578ef11e2330d0d12a NeedsCompilation: no Title: Affymetrix Affymetrix MG_U74Bv2 Array annotation data (chip mgu74bv2) Description: Affymetrix Affymetrix MG_U74Bv2 Array annotation data (chip mgu74bv2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74bv2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mgu74bv2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgu74bv2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 45c48d11af03633dc10f8682b7ad74c5 NeedsCompilation: no Title: mgu74bv2cdf Description: A package containing an environment representing the MG_U74Bv2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mgu74bv2, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74bv2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74bv2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: f6a12f88ea3c43a3e885c7e9b3fd03d2 NeedsCompilation: no Title: Probe sequence data for microarrays of type mgu74bv2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Bv2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mgu74bv2, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74bv2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74c.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 6c4f183e6ed5f0b5735596e7544746ae NeedsCompilation: no Title: Affymetrix Affymetrix MG_U74C Array annotation data (chip mgu74c) Description: Affymetrix Affymetrix MG_U74C Array annotation data (chip mgu74c) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74c Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mgu74c.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgu74ccdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 172e626b0e3072edc65c4efff35fe998 NeedsCompilation: no Title: mgu74ccdf Description: A package containing an environment representing the MG_U74C.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, mgu74c, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74ccdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74cprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 186992992708f0071fd552ef92b9e25c NeedsCompilation: no Title: Probe sequence data for microarrays of type mgu74c Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74C\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mgu74c, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74cprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74cv2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 1f860dfbf4400ede54eb30d9a70ec131 NeedsCompilation: no Title: Affymetrix Affymetrix MG_U74Cv2 Array annotation data (chip mgu74cv2) Description: Affymetrix Affymetrix MG_U74Cv2 Array annotation data (chip mgu74cv2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mgu74cv2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mgu74cv2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgu74cv2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 9ef62b4b28f97770859db24393a07ed5 NeedsCompilation: no Title: mgu74cv2cdf Description: A package containing an environment representing the MG_U74Cv2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mgu74cv2, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74cv2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mgu74cv2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 0373496c817a1c1a153114047cfa7c5b NeedsCompilation: no Title: Probe sequence data for microarrays of type mgu74cv2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Cv2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mgu74cv2, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mgu74cv2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mguatlas5k.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 826093fe7228c08962aff36ad89af28e NeedsCompilation: no Title: Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k) Description: Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k) assembled using data from public repositories biocViews: ChipDb, AnnotationData, ClontechChip, Mus_musculus, mguatlas5k Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Clontech source.ver: src/contrib/mguatlas5k.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgug4104a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 7b1cef094a226257cd657ed8d61e9ef1 NeedsCompilation: no Title: Agilent annotation data (chip mgug4104a) Description: Agilent annotation data (chip mgug4104a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, mgug4104a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Agilent source.ver: src/contrib/mgug4104a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgug4120a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: bb57e8b2efe3d038ec2a0ace0313a4e7 NeedsCompilation: no Title: Agilent annotation data (chip mgug4120a) Description: Agilent annotation data (chip mgug4120a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, mgug4120a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Agilent source.ver: src/contrib/mgug4120a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgug4121a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 6b5cc321d5175356c383b91e30e120b7 NeedsCompilation: no Title: Agilent Mouse annotation data (chip mgug4121a) Description: Agilent Mouse annotation data (chip mgug4121a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, mgug4121a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Agilent source.ver: src/contrib/mgug4121a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mgug4122a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 5fcdce909ac1c0ccbf06bf6411f6fe52 NeedsCompilation: no Title: Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a) Description: Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, mgug4122a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Agilent source.ver: src/contrib/mgug4122a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mi16cod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Mm.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: f3a8e6f45ce5c298c1b1c5b32bf2630c NeedsCompilation: no Title: Codelink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod) Description: Codelink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Mus_musculus, mi16cod Author: Diego Diez Maintainer: Diego Diez organism: Mus musculus manufacturer: Codelink source.ver: src/contrib/mi16cod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mirbase.db Version: 1.2.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.22.5) Imports: methods, AnnotationDbi License: file LICENSE MD5sum: 316bc12cee8c2dd9240b7fc30cd1619e NeedsCompilation: no Title: miRBase: the microRNA database Description: miRBase: the microRNA database assembled using data from miRBase (http://www.mirbase.org/). biocViews: AnnotationData, FunctionalAnnotation Author: James F. Reid Maintainer: James F. Reid source.ver: src/contrib/mirbase.db_1.2.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: TRUE importsMe: Ularcirc suggestsMe: GenomicFeatures, OrganismDbi, TCGAutils, txdbmaker dependencyCount: 46 Package: miRBaseVersions.db Version: 1.1.0 Imports: AnnotationDbi, DBI, RSQLite, methods, gtools Suggests: testthat, knitr, rmarkdown, annotate License: Artistic-2.0 MD5sum: 9944ab7a474f84a40100c56298f9cb77 NeedsCompilation: no Title: Collection of mature miRNA names of 22 different miRBase release versions Description: Annotation package containing all available miRNA names from 22 versions (data from http://www.mirbase.org/). biocViews: Preprocessing, miRNA, AnnotationData Author: Stefan Haunsberger [aut, cre] Maintainer: Stefan Haunsberger VignetteBuilder: knitr source.ver: src/contrib/miRBaseVersions.db_1.1.0.tar.gz vignettes: vignettes/miRBaseVersions.db/inst/doc/miRBaseVersions.db-vignette.pdf, vignettes/miRBaseVersions.db/inst/doc/miRBaseVersions.db-vignette.html vignetteTitles: miRBaseVersions.db-vignette.pdf, miRBaseVersions.db-vignette.html hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: miRNAmeConverter importsMe: ExpHunterSuite dependencyCount: 47 Package: mirna102xgaincdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 9091a45c2ac15c2de0263743ab334f97 NeedsCompilation: no Title: mirna102xgaincdf Description: A package containing an environment representing the miRNA-1_0_2Xgain.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mirna102xgain, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mirna102xgaincdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mirna10cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 814da2a2e298e132f4db0b2e8ab814be NeedsCompilation: no Title: mirna10cdf Description: A package containing an environment representing the miRNA-1_0.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mirna10, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mirna10cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ExiMiR dependencyCount: 46 Package: mirna10probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 8bfa6cdfeee1c563b4881214bd5d4ce1 NeedsCompilation: no Title: Probe sequence data for microarrays of type mirna10 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was miRNA-1\_0\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mirna10, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mirna10probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mirna20cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 56f7807673ff108427ae7f6bdf85ae1c NeedsCompilation: no Title: mirna20cdf Description: A package containing an environment representing the miRNA-2_0.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, mirna20, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mirna20cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: miRNAtap.db Version: 0.99.10 Depends: miRNAtap Imports: AnnotationDbi, DBI, RSQLite, miRNAtap License: GPL-2 MD5sum: 48010280b68d6f1ddbff3b374132ce0a NeedsCompilation: no Title: Data for miRNAtap Description: This package holds the database for miRNAtap. biocViews: miRNA, AnnotationData Author: Maciej Pajak, T. Ian Simpson Maintainer: Maciej Pajak source.ver: src/contrib/miRNAtap.db_0.99.10.tar.gz vignettes: vignettes/miRNAtap.db/inst/doc/miRNAtap.db.pdf vignetteTitles: miRNAtap.db hasREADME: TRUE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/miRNAtap.db/inst/doc/miRNAtap.db.R suggestsMe: miRNAtap dependencyCount: 56 Package: mm24kresogen.db Version: 2.5.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.13.19), org.Mm.eg.db (>= 2.5.0) Imports: methods, AnnotationDbi Suggests: annotate License: Artistic-2.0 MD5sum: 437f5d4bc225ee500af1ecc2d4da472b NeedsCompilation: no Title: RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen) Description: RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen) assembled using data from public repositories biocViews: AnnotationData, RNG_MRCChip, Mus_musculus, mm24kresogen Author: AltraBio Maintainer: Simon de Bernard organism: Mus musculus manufacturer: RNG_MRC source.ver: src/contrib/mm24kresogen.db_2.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: MmAgilentDesign026655.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 7ef619bd2c74f22ea4f3c2b2c4131fe9 NeedsCompilation: no Title: Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655) Description: Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Mus_musculus, MmAgilentDesign026655 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Agilent source.ver: src/contrib/MmAgilentDesign026655.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: moe430a.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 2bcdace3c55437bc8428b99064e486b1 NeedsCompilation: no Title: Affymetrix Affymetrix MOE430A Array annotation data (chip moe430a) Description: Affymetrix Affymetrix MOE430A Array annotation data (chip moe430a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, moe430a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/moe430a.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: clValid dependencyCount: 47 Package: moe430acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: b03f1295fc483f0d782a4615e8ca0137 NeedsCompilation: no Title: moe430acdf Description: A package containing an environment representing the MOE430A.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, moe430a, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/moe430acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: moe430aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 0aa83189d04599a65211d1a2f0a51c8f NeedsCompilation: no Title: Probe sequence data for microarrays of type moe430a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430A\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, moe430a, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/moe430aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: moe430b.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 2d8a80b9d3342fb943087cc327c824e7 NeedsCompilation: no Title: Affymetrix Affymetrix MOE430B Array annotation data (chip moe430b) Description: Affymetrix Affymetrix MOE430B Array annotation data (chip moe430b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, moe430b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/moe430b.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: moe430bcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: b7112dcf8ccfe4e079ca67ff62046f2e NeedsCompilation: no Title: moe430bcdf Description: A package containing an environment representing the MOE430B.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, moe430b, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/moe430bcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: moe430bprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 1368e6f4225babe7a693ccd39a3a436a NeedsCompilation: no Title: Probe sequence data for microarrays of type moe430b Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430B\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, moe430b, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/moe430bprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: moex10stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b1c12c80a4424e2854beab9dc796cb00 NeedsCompilation: no Title: Affymetrix moex10 annotation data (chip moex10stprobeset) Description: Affymetrix moex10 annotation data (chip moex10stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, moex10stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/moex10stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: moex10sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: bc3357b3c77ab7bf1dfb66f5f7da36ec NeedsCompilation: no Title: Affymetrix moex10 annotation data (chip moex10sttranscriptcluster) Description: Affymetrix moex10 annotation data (chip moex10sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, moex10sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/moex10sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: MoExExonProbesetLocation Version: 1.15.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.7.17) License: LGPL MD5sum: 07eea205fce2a8cf4585fa7e71fb0057 NeedsCompilation: no Title: Probe sequence data for microarrays of type MoEx Description: This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. biocViews: AnnotationData, AffymetrixChip, probe, MoEx, Mus musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Raffaele A. Calogero source.ver: src/contrib/MoExExonProbesetLocation_1.15.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mogene.1.0.st.v1frmavecs Version: 1.1.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: b46f76903d0f19b85e8fa30347813ff5 NeedsCompilation: no Title: Vectors used by frma for microarrays of type mogene.1.0.st.v1frmavecs Description: This package was created by frmaTools version 1.13.0. biocViews: AnnotationData, AffymetrixChip, mogene.1.0.st.v1, Homo_sapiens, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/mogene.1.0.st.v1frmavecs_1.1.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: mogene10stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 570d4cf3fcc42d1e9b54237b9e4eb5f7 NeedsCompilation: no Title: Affymetrix mogene10 annotation data (chip mogene10stprobeset) Description: Affymetrix mogene10 annotation data (chip mogene10stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mogene10stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mogene10stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mogene10sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 9553a8ecefad2baa7241c6b6bb8013f5 NeedsCompilation: no Title: Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster) Description: Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mogene10sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mogene10sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mogene10stv1cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 9c0271f5d6493290fc47f041a8c3f925 NeedsCompilation: no Title: mogene10stv1cdf Description: A package containing an environment representing the MoGene-1_0-st-v1.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, mogene10stv1, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mogene10stv1cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mogene10stv1probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 63cba1e2a0edee9f201267057fddb0fa NeedsCompilation: no Title: Probe sequence data for microarrays of type mogene10stv1 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MoGene-1\_0-st-v1\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mogene10stv1, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mogene10stv1probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mogene11stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 1fba63da3f550e814a58c09d24d61cc0 NeedsCompilation: no Title: Affymetrix mogene11 annotation data (chip mogene11stprobeset) Description: Affymetrix mogene11 annotation data (chip mogene11stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mogene11stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mogene11stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mogene11sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 2a3bf07a4794e2349b7d09368dcb7d18 NeedsCompilation: no Title: Affymetrix mogene11 annotation data (chip mogene11sttranscriptcluster) Description: Affymetrix mogene11 annotation data (chip mogene11sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mogene11sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mogene11sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mogene20stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a64ddbf33e4f2b96301452e808d0e81a NeedsCompilation: no Title: Affymetrix mogene20 annotation data (chip mogene20stprobeset) Description: Affymetrix mogene20 annotation data (chip mogene20stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mogene20stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mogene20stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mogene20sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: e00e56d47bd19169875690e8e2129156 NeedsCompilation: no Title: Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster) Description: Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mogene20sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mogene20sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mogene21stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: d6b3c352329b46493a20f6c27db05d43 NeedsCompilation: no Title: Affymetrix mogene21 annotation data (chip mogene21stprobeset) Description: Affymetrix mogene21 annotation data (chip mogene21stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mogene21stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mogene21stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mogene21sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 10aaecc97bf06bfe770496b99612837a NeedsCompilation: no Title: Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster) Description: Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mogene21sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mogene21sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mouse.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 9790c803e9b9c2a74e2b711991a27009 NeedsCompilation: no Title: Base Level Annotation databases for mouse Description: Base annotation databases for mouse, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Mus_musculus Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/mouse.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mouse4302.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 4ecaa53d32faca4199ba712c0e8ee570 NeedsCompilation: no Title: Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302) Description: Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mouse4302 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mouse4302.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ChIPXpress, MLP dependencyCount: 47 Package: mouse4302cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: bda3463613f958de35c58777db05cec2 NeedsCompilation: no Title: mouse4302cdf Description: A package containing an environment representing the Mouse430_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, mouse4302, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mouse4302cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ChIPXpress dependencyCount: 46 Package: mouse4302frmavecs Version: 1.5.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: ec144b381abbe54d696356c1c124e372 NeedsCompilation: no Title: Vectors used by frma for microarrays of type mouse4302 Description: This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0. biocViews: AnnotationData, AffymetrixChip, mouse4302, Mus_musculus, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/mouse4302frmavecs_1.5.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ChIPXpress dependencyCount: 0 Package: mouse4302probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 7116787a7db241a545e79e419a8cfa0d NeedsCompilation: no Title: Probe sequence data for microarrays of type mouse4302 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mouse4302, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mouse4302probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mouse430a2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 0f1d053517af5f973f3cc49289cca1e5 NeedsCompilation: no Title: Affymetrix Affymetrix Mouse430A_2 Array annotation data (chip mouse430a2) Description: Affymetrix Affymetrix Mouse430A_2 Array annotation data (chip mouse430a2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mouse430a2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mouse430a2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mouse430a2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 1114c0415d1200bc21ad205e0830b075 NeedsCompilation: no Title: mouse430a2cdf Description: A package containing an environment representing the Mouse430A_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, mouse430a2, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mouse430a2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mouse430a2frmavecs Version: 1.3.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: 3bcb8de9182bbb8de5d560748eafa0cc NeedsCompilation: no Title: Vectors used by frma for microarrays of type mouse430a2 Description: This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0. biocViews: AnnotationData, AffymetrixChip, mouse430a2, Mus_musculus, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/mouse430a2frmavecs_1.3.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: mouse430a2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: bb3c34477d4fcf03a539772011118795 NeedsCompilation: no Title: Probe sequence data for microarrays of type mouse430a2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430A\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mouse430a2, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mouse430a2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mouseCHRLOC Version: 2.1.6 Depends: R(>= 2.7.0) License: The Artistic License, Version 2.0 MD5sum: 0b81d7391e628cc355af4de3c5585a5f NeedsCompilation: no Title: A data package containing annotation data for mouseCHRLOC Description: Annotation data file for mouseCHRLOC assembled using data from public data repositories biocViews: FunctionalAnnotation, Mus_musculus Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald Maintainer: Biocore Data Team organism: Mus musculus source.ver: src/contrib/mouseCHRLOC_2.1.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: mpedbarray.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 7bcd1fee1554b6f8844c9bf30b7db4ef NeedsCompilation: no Title: FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray) Description: FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray) assembled using data from public repositories biocViews: ChipDb, AnnotationData, FHCRC Nelson LabChip, Mus_musculus, mpedbarray Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: FHCRC Nelson Lab source.ver: src/contrib/mpedbarray.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: MPO.db Version: 0.99.8 Depends: R (>= 4.3.0) Imports: AnnotationDbi, AnnotationHub, BiocFileCache, DBI, methods, utils Suggests: rmarkdown, knitr, testthat (>= 3.0.0) License: Artistic-2.0 MD5sum: fd9bff2a147bbef37b58cef85ec79488 NeedsCompilation: no Title: A set of annotation maps describing the Mouse Phenotype Ontology Description: We have developed the human disease ontology R package HDO.db, which provides the semantic relationship between human diseases. Relying on the DOSE and GOSemSim packages we developed, we can carry out disease enrichment and semantic similarity analyses. Many biological studies are achieved through mouse models, and a large number of data indicate the association between genotypes and phenotypes or diseases. The study of model organisms can be transformed into useful knowledge about normal human biology and disease to facilitate treatment and early screening for diseases. Organism-specific genotype-phenotypic associations can be applied to cross-species phenotypic studies to clarify previously unknown phenotypic connections in other species. Using the same principle to diseases can identify genetic associations and even help to identify disease associations that are not obvious. Therefore, as a supplement to HDO.db and DOSE, we developed mouse phenotypic ontology R package MPO.db. biocViews: AnnotationData, FunctionalAnnotation, AnnotationHub Author: Erqiang Hu [aut, cre] () Maintainer: Erqiang Hu <13766876214@163.com> URL: https://github.com/huerqiang/MPO.db VignetteBuilder: knitr BugReports: https://github.com/huerqiang/MPO.db/issues git_url: https://git.bioconductor.org/packages/MPO.db git_branch: devel git_last_commit: 653dfe0 git_last_commit_date: 2024-08-01 Date/Publication: 2024-08-07 source.ver: src/contrib/MPO.db_0.99.8.tar.gz vignettes: vignettes/MPO.db/inst/doc/MPO_vignette.html vignetteTitles: MPO_vignette hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/MPO.db/inst/doc/MPO_vignette.R dependencyCount: 66 Package: mta10probeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 84517c6b354690cd72ccefbe3b39d8e1 NeedsCompilation: no Title: Affymetrix mta10 annotation data (chip mta10probeset) Description: Affymetrix mta10 annotation data (chip mta10probeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mta10probeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mta10probeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mta10transcriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: bfd13b16b71ac2cfc82f40f2d102892b NeedsCompilation: no Title: Affymetrix mta10 annotation data (chip mta10transcriptcluster) Description: Affymetrix mta10 annotation data (chip mta10transcriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mta10transcriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mta10transcriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mu11ksuba.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 73d80611d1eaf8ee1eb37ebc469d97e9 NeedsCompilation: no Title: Affymetrix Affymetrix Mu11KsubA Array annotation data (chip mu11ksuba) Description: Affymetrix Affymetrix Mu11KsubA Array annotation data (chip mu11ksuba) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mu11ksuba Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mu11ksuba.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mu11ksubacdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 52fb8ac56435775022fb62f40efafd22 NeedsCompilation: no Title: mu11ksubacdf Description: A package containing an environment representing the Mu11KsubA.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu11ksuba, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu11ksubacdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mu11ksubaprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 813cd0750cca6ff0cfb696b83286177e NeedsCompilation: no Title: Probe sequence data for microarrays of type mu11ksuba Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mu11KsubA\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mu11ksuba, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu11ksubaprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mu11ksubb.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 2b61d911c3595843e80041949cb79b41 NeedsCompilation: no Title: Affymetrix Affymetrix Mu11KsubB Array annotation data (chip mu11ksubb) Description: Affymetrix Affymetrix Mu11KsubB Array annotation data (chip mu11ksubb) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mu11ksubb Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mu11ksubb.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mu11ksubbcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: f9691ea74e19dfe57bf6cca6ed396947 NeedsCompilation: no Title: mu11ksubbcdf Description: A package containing an environment representing the Mu11KsubB.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu11ksubb, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu11ksubbcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mu11ksubbprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 28d162e18e4e16e3c6db47195d2ea0ac NeedsCompilation: no Title: Probe sequence data for microarrays of type mu11ksubb Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mu11KsubB\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, mu11ksubb, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu11ksubbprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: Mu15v1.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: e9297b5fe223b046bc65dc6ea0b4376d NeedsCompilation: no Title: FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1) Description: FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1) assembled using data from public repositories biocViews: ChipDb, AnnotationData, FHCRC Genomics Shared ResourceChip, Mus_musculus, Mu15v1 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: FHCRC Genomics Shared Resource source.ver: src/contrib/Mu15v1.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mu19ksuba.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: c057d8793f2db914a93d2e1f5a3af178 NeedsCompilation: no Title: Affymetrix Affymetrix Mu19KsubA Array annotation data (chip mu19ksuba) Description: Affymetrix Affymetrix Mu19KsubA Array annotation data (chip mu19ksuba) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mu19ksuba Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mu19ksuba.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mu19ksubacdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 83a9e7a3bac665b655786e66dbd77848 NeedsCompilation: no Title: mu19ksubacdf Description: A package containing an environment representing the Mu19KsubA.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu19ksuba, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu19ksubacdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mu19ksubb.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 1b177a3b5626c825c91e7c25e0acd897 NeedsCompilation: no Title: Affymetrix Affymetrix Mu19KsubB Array annotation data (chip mu19ksubb) Description: Affymetrix Affymetrix Mu19KsubB Array annotation data (chip mu19ksubb) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mu19ksubb Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mu19ksubb.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mu19ksubbcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 35e5ebcb4cb51950a85c1e3622bb39f0 NeedsCompilation: no Title: mu19ksubbcdf Description: A package containing an environment representing the Mu19KsubB.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu19ksubb, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu19ksubbcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mu19ksubc.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Mm.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: bef37c9cd01032e9f1fb177a1af8cba4 NeedsCompilation: no Title: Affymetrix Affymetrix Mu19KsubC Array annotation data (chip mu19ksubc) Description: Affymetrix Affymetrix Mu19KsubC Array annotation data (chip mu19ksubc) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, mu19ksubc Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/mu19ksubc.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mu19ksubccdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: e53ef2716f88022e5e41e2cd857fc2a3 NeedsCompilation: no Title: mu19ksubccdf Description: A package containing an environment representing the Mu19KsubC.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu19ksubc, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu19ksubccdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: Mu22v3.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Mm.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 44aaebe909be9b0108256194c55cf6fb NeedsCompilation: no Title: FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3) Description: FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3) assembled using data from public repositories biocViews: ChipDb, AnnotationData, FHCRC Genomics Shared ResourceChip, Mus_musculus, Mu22v3 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus manufacturer: FHCRC Genomics Shared Resource source.ver: src/contrib/Mu22v3.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: mu6500subacdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: e72152fc4bae307e3858160e018b7f92 NeedsCompilation: no Title: mu6500subacdf Description: A package containing an environment representing the Mu6500subA.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu6500suba, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu6500subacdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mu6500subbcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 5000bea2a018b4b6ec05cda111438bc1 NeedsCompilation: no Title: mu6500subbcdf Description: A package containing an environment representing the Mu6500subB.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu6500subb, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu6500subbcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mu6500subccdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: c7cbbe6c70a0a3ae11600ad6c0e540c1 NeedsCompilation: no Title: mu6500subccdf Description: A package containing an environment representing the Mu6500subC.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu6500subc, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu6500subccdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: mu6500subdcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: a614674e8bc60fefd8520dd25d45f8d0 NeedsCompilation: no Title: mu6500subdcdf Description: A package containing an environment representing the Mu6500subD.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, mu6500subd, Mus_musculus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/mu6500subdcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: Mus.musculus Version: 1.3.1 Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi (>= 1.11.39), GenomicFeatures, GO.db, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene Imports: GenomicFeatures, AnnotationDbi License: Artistic-2.0 MD5sum: 1b8defe64c2dd308a88d1ac7a4ce04b9 NeedsCompilation: no Title: Annotation package for the Mus.musculus object Description: Contains the Mus.musculus object to access data from several related annotation packages. biocViews: AnnotationData, Genetics, OrganismDb, Mus_musculus Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/Mus.musculus_1.3.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: RNAseq123 importsMe: biscuiteer suggestsMe: epivizr, epivizrChart, epivizrData, epivizrStandalone, NanoMethViz, SARC dependencyCount: 109 Package: mwgcod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Mm.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 3d6e2af6b05d6e07a212c043dc9d37c4 NeedsCompilation: no Title: Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod) Description: Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Mus_musculus, mwgcod Author: Diego Diez Maintainer: Diego Diez organism: Mus musculus manufacturer: Codelink source.ver: src/contrib/mwgcod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: Norway981.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 85367390919bba9018438585e59fbb87 NeedsCompilation: no Title: Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981) Description: Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981) assembled using data from public repositories biocViews: ChipDb, AnnotationData, Stanford Microarray DatabaseChip, Homo_sapiens, Norway981 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Stanford Microarray Database source.ver: src/contrib/Norway981.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: nugohs1a520180.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Hs.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: f83701b35b07e69e1ad503b546bb5eaf NeedsCompilation: no Title: Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180) Description: Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, nugohs1a520180 Author: Philip de Groot Maintainer: Philip de Groot organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/nugohs1a520180.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: nugohs1a520180cdf Version: 3.4.0 Depends: R (>= 2.10), utils Imports: AnnotationDbi License: LGPL MD5sum: aa152658a4a801cc0edb552a98aee841 NeedsCompilation: no Title: nugohs1a520180cdf Description: A package containing an environment representing the NuGO_Hs1a520180.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, nugohs1a520180, Homo_sapiens Author: Philip de Groot Maintainer: Philip de Groot source.ver: src/contrib/nugohs1a520180cdf_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: nugohs1a520180probe Version: 3.4.0 Depends: R (>= 2.10), AnnotationDbi (>= 1.11.20) License: LGPL MD5sum: 6acf20ac4a799eaae97d0a64426d6ac3 NeedsCompilation: no Title: Probe sequence data for microarrays of type nugohs1a520180 Description: This package was automatically created by package AnnotationForge version 1.11.20. The probe sequence data was obtained from http://www.affymetrix.com. biocViews: AnnotationData, AffymetrixChip, probe, nugohs1a520180, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Philip de Groot source.ver: src/contrib/nugohs1a520180probe_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: nugomm1a520177.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Mm.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 99f69ea2cbb80a79bedee99e3d726e50 NeedsCompilation: no Title: Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177) Description: Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Mus_musculus, nugomm1a520177 Author: Philip de Groot Maintainer: Philip de Groot organism: Mus musculus manufacturer: Affymetrix source.ver: src/contrib/nugomm1a520177.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: nugomm1a520177cdf Version: 3.4.0 Depends: R (>= 2.10), utils Imports: AnnotationDbi License: LGPL MD5sum: fc60c2018580decaea30f09de55142fb NeedsCompilation: no Title: nugomm1a520177cdf Description: A package containing an environment representing the NuGO_Mm1a520177.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, nugomm1a520177, Mus_musculus Author: Philip de Groot Maintainer: Philip de Groot source.ver: src/contrib/nugomm1a520177cdf_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: nugomm1a520177probe Version: 3.4.0 Depends: R (>= 2.10), AnnotationDbi (>= 1.11.20) License: LGPL MD5sum: 7fa974389ad2be6ebda8810496221a9b NeedsCompilation: no Title: Probe sequence data for microarrays of type nugomm1a520177 Description: This package was automatically created by package AnnotationForge version 1.11.20. The probe sequence data was obtained from http://www.affymetrix.com. biocViews: AnnotationData, AffymetrixChip, probe, nugomm1a520177, Mus_musculus Author: The Bioconductor Project www.bioconductor.org Maintainer: Philip de Groot source.ver: src/contrib/nugomm1a520177probe_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: oligoData Version: 1.8.0 Depends: R (>= 2.15.0), oligo Suggests: pd.hg.u95av2, pd.huex.1.0.st.v2, pd.mapping50k.xba240, pd.hg18.60mer.expr, pd.2006.07.18.hg18.refseq.promoter, pd.hugene.1.0.st.v1 License: LGPL (>= 2) MD5sum: 9625cfd4b31bb575c4029a0632a7ee12 NeedsCompilation: no Title: Dataset samples for the oligo package Description: Dataset samples (Affymetrix: Expression, Gene, Exon, SNP; NimbleGen: Expression, Tiling) to be used with the oligo package. biocViews: ExperimentData Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/oligoData_1.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: mimager, oligo dependencyCount: 65 Package: ontoProcData Version: 0.99.9901 Depends: R(>= 4.2.0) Suggests: testthat (>= 3.0.0), AnnotationHub, utils, knitr, rmarkdown License: Artistic-2.0 MD5sum: d4160c1fc853db468ce73c7fe62ca00f NeedsCompilation: no Title: A data package for ontoProc Description: This package manages rda files of multiple ontologies that are used in the ontoProc package. These ontologies were originally downloaded as owl or obo files and converted into Rda files. The files were downloaded at various times but most of them were downloaded on August 08 2022. biocViews: AnnotationData, AnnotationHub Author: Sara Stankiewicz [aut, cre] () Maintainer: Sara Stankiewicz VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/ontoProcData git_branch: master git_last_commit: 242b13d git_last_commit_date: 2022-10-12 Date/Publication: 2022-10-19 source.ver: src/contrib/ontoProcData_0.99.9901.tar.gz vignettes: vignettes/ontoProcData/inst/doc/creatingRDAObjects.html, vignettes/ontoProcData/inst/doc/ontoProcData.html vignetteTitles: Creating RDA objects, ontoProcData:Data Storage for the package ontoProc hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/ontoProcData/inst/doc/creatingRDAObjects.R, vignettes/ontoProcData/inst/doc/ontoProcData.R dependencyCount: 0 Package: OperonHumanV3.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 648da5d4d63c6c8327f6035ee09f2b65 NeedsCompilation: no Title: FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3) Description: FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3) assembled using data from public repositories biocViews: ChipDb, AnnotationData, FHCRC Nelson LabChip, Homo_sapiens, OperonHumanV3 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: FHCRC Nelson Lab source.ver: src/contrib/OperonHumanV3.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: org.Ag.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b7bba2a1eee2f69084937f03d993d3ba NeedsCompilation: no Title: Genome wide annotation for Anopheles Description: Genome wide annotation for Anopheles, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Anopheles_gambiae Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Anopheles gambiae source.ver: src/contrib/org.Ag.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: geneXtendeR, goSorensen, rrvgo dependencyCount: 46 Package: org.At.tair.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 5f9cfc458b0af5cd4e6a2db04d304f13 NeedsCompilation: no Title: Genome wide annotation for Arabidopsis Description: Genome wide annotation for Arabidopsis, primarily based on mapping using TAIR identifiers. biocViews: OrgDb, AnnotationData, Arabidopsis_thaliana Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana source.ver: src/contrib/org.At.tair.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: ag.db, ath1121501.db suggestsMe: AnnotationDbi, goSorensen, NetSAM, rrvgo, spatialHeatmap, topconfects dependencyCount: 46 Package: org.Bt.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 9eea3d6ba55f61524a04aafb1be83356 NeedsCompilation: no Title: Genome wide annotation for Bovine Description: Genome wide annotation for Bovine, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Bos_taurus Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/org.Bt.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: bovine.db importsMe: bioCancer suggestsMe: geneXtendeR, goSorensen, multiGSEA, rrvgo dependencyCount: 46 Package: org.Ce.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 3b3cbc21c9f362b436ba4a80d9824da4 NeedsCompilation: no Title: Genome wide annotation for Worm Description: Genome wide annotation for Worm, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Caenorhabditis_elegans Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/org.Ce.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: celegans.db importsMe: CoSIA suggestsMe: ChIPpeakAnno, geneXtendeR, goSorensen, multiGSEA, NetSAM, rrvgo dependencyCount: 46 Package: org.Cf.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 85da47fb3b35030884cf5b14940015d8 NeedsCompilation: no Title: Genome wide annotation for Canine Description: Genome wide annotation for Canine, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Canis_familiaris Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Canis familiaris source.ver: src/contrib/org.Cf.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: canine.db, canine2.db suggestsMe: geneXtendeR, goSorensen, MLP, multiGSEA, NetSAM, rrvgo dependencyCount: 46 Package: org.Dm.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 29d33ed6c67a4562038f549dab8d536e NeedsCompilation: no Title: Genome wide annotation for Fly Description: Genome wide annotation for Fly, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Drosophila_melanogaster Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/org.Dm.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: drosgenome1.db, drosophila2.db, indac.db importsMe: chipenrich, CoSIA suggestsMe: annotatr, Damsel, geneXtendeR, goSorensen, GRaNIE, gsean, IntramiRExploreR, multiGSEA, NetSAM, rrvgo, spatialHeatmap, tximeta, chipenrich.data dependencyCount: 46 Package: org.Dr.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: e0c8b01442611df62c594b5552bd1a29 NeedsCompilation: no Title: Genome wide annotation for Zebrafish Description: Genome wide annotation for Zebrafish, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Danio_rerio Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/org.Dr.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: zebrafish.db importsMe: chipenrich, CoSIA, CAMML suggestsMe: geneXtendeR, goSorensen, multiGSEA, NetSAM, rrvgo, spatialHeatmap, chipenrich.data, pagoda2 dependencyCount: 46 Package: org.EcK12.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: ee62df51636d67d2b3a29cd758c37251 NeedsCompilation: no Title: Genome wide annotation for E coli strain K12 Description: Genome wide annotation for E coli strain K12, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Escherichia_coli Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Escherichia coli source.ver: src/contrib/org.EcK12.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: ecoli2.db suggestsMe: goSorensen, pathview, qpgraph, rrvgo dependencyCount: 46 Package: org.EcSakai.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 85c37f3ed2ee6a80e54e1020c0895404 NeedsCompilation: no Title: Genome wide annotation for E coli strain Sakai Description: Genome wide annotation for E coli strain Sakai, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Escherichia_coli Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Escherichia coli source.ver: src/contrib/org.EcSakai.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: goSorensen, rrvgo dependencyCount: 46 Package: org.Gg.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: c9a62fecb11dd4dc0b34392f354ffe5a NeedsCompilation: no Title: Genome wide annotation for Chicken Description: Genome wide annotation for Chicken, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Gallus_gallus Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/org.Gg.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: chicken.db suggestsMe: annotatr, geneXtendeR, goSorensen, multiGSEA, rrvgo dependencyCount: 46 Package: org.Hs.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 191276f1fde82d731babe624c7a9063f NeedsCompilation: no Title: Genome wide annotation for Human Description: Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Homo_sapiens, humanLLMappings Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/org.Hs.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: CoCiteStats, GSReg, KEGGlincs, signatureSearch, tRanslatome, clariomdhumanprobeset.db, clariomdhumantranscriptcluster.db, 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methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 63357791b48f3fc181edd8c772ee6f94 NeedsCompilation: no Title: Genome wide annotation for Mouse Description: Genome wide annotation for Mouse, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Mus_musculus, mouseLLMappings Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/org.Mm.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: clariomsmousehttranscriptcluster.db, clariomsmousetranscriptcluster.db, htmg430a.db, htmg430b.db, htmg430pm.db, illuminaMousev1.db, illuminaMousev1p1.db, illuminaMousev2.db, lumiMouseAll.db, m10kcod.db, m20kcod.db, mgu74a.db, mgu74av2.db, mgu74b.db, mgu74bv2.db, mgu74c.db, mgu74cv2.db, mguatlas5k.db, mgug4104a.db, mgug4120a.db, mgug4121a.db, mgug4122a.db, mi16cod.db, mm24kresogen.db, MmAgilentDesign026655.db, moe430a.db, moe430b.db, moex10stprobeset.db, moex10sttranscriptcluster.db, mogene10stprobeset.db, mogene10sttranscriptcluster.db, mogene11stprobeset.db, mogene11sttranscriptcluster.db, mogene20stprobeset.db, mogene20sttranscriptcluster.db, mogene21stprobeset.db, mogene21sttranscriptcluster.db, mouse4302.db, mouse430a2.db, mpedbarray.db, mta10probeset.db, mta10transcriptcluster.db, mu11ksuba.db, mu11ksubb.db, Mu15v1.db, mu19ksuba.db, mu19ksubb.db, mu19ksubc.db, Mu22v3.db, Mus.musculus, mwgcod.db, nugomm1a520177.db, annotation, RnaSeqGeneEdgeRQL, csawBook, OSCA.workflows importsMe: APL, cellity, chimeraviz, chipenrich, CoSIA, debrowser, EasyCellType, EGSEA, gINTomics, GmicR, Rmmquant, rTRMui, scPipe, tenXplore, msigdb, CAMML, convertid, Grouphmap, ProFAST suggestsMe: annotate, annotatr, APAlyzer, artMS, autonomics, CAGEfightR, CellTrails, compEpiTools, CRISPRseek, csaw, destiny, enhancerHomologSearch, FELLA, fgsea, gatom, gCrisprTools, geneXtendeR, GenomicFeatures, girafe, goSorensen, GRaNIE, iNETgrate, iSEEfier, isomiRs, karyoploteR, MLP, multiGSEA, NanoMethViz, NetSAM, NoRCE, ontoProc, Organism.dplyr, pathview, phantasus, PhosR, Pigengene, ReportingTools, rGREAT, RnBeads, rrvgo, rTRM, singleCellTK, spatialHeatmap, tidybulk, tricycle, vissE, chipenrich.data, CAGEWorkflow, chipseqDB, ExpHunterSuite, simpleSingleCell, bulkAnalyseR, conos, limorhyde, MARVEL, pagoda2, seeker, WGCNA dependencyCount: 46 Package: org.Mmu.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 7c23ce0a276f52e0c34029b9094da1db NeedsCompilation: no Title: Genome wide annotation for Rhesus Description: Genome wide annotation for Rhesus, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Macaca_mulatta Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/org.Mmu.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: goSorensen, GRaNIE, MLP, rrvgo dependencyCount: 46 Package: org.Mxanthus.db Version: 1.0.27 Depends: R (>= 2.7.0), methods, AnnotationHub (>= 1.46.0), AnnotationDbi, BiocStyle Imports: BiocFileCache (>= 1.10.1) Suggests: DBI, RUnit, clusterProfiler, knitr, rmarkdown License: Artistic-2.0 MD5sum: 929fa3dd8c5e1fdbcdbcbcd468845798 NeedsCompilation: no Title: Genome wide annotation for Myxococcus xanthus DK 1622 Description: Genome wide annotation for Myxococcus xanthus DK 1622, primarily based on mapping using Gene identifiers. biocViews: AnnotationHub, OrgDb, AnnotationData Author: Eduardo Illueca Fernández [aut, cre], Jesualdo Tomás Fernández-Breis [aut] Maintainer: Eduardo Illueca Fernández organism: Myxococcus xanthus DK 1622 VignetteBuilder: knitr, rmarkdown git_url: https://git.bioconductor.org/packages/org.Mxanthus.db git_branch: devel git_last_commit: a17100f git_last_commit_date: 2020-01-20 Date/Publication: 2024-04-03 source.ver: src/contrib/org.Mxanthus.db_1.0.27.tar.gz vignettes: vignettes/org.Mxanthus.db/inst/doc/org.Mxanthus.db.html vignetteTitles: Genome wide annotation for Myxococcus xanthus DK 1622 hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/org.Mxanthus.db/inst/doc/org.Mxanthus.db.R dependencyCount: 82 Package: org.Pf.plasmo.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 84d8d5c253ffea3537191e437ef6d5c7 NeedsCompilation: no Title: Genome wide annotation for Malaria Description: Genome wide annotation for Malaria, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Plasmodium_falciparum Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Plasmodium falciparum source.ver: src/contrib/org.Pf.plasmo.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: org.Pt.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 3385bff8e6ccc1693fa90b41e2d37826 NeedsCompilation: no Title: Genome wide annotation for Chimp Description: Genome wide annotation for Chimp, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Pan_troglodytes Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/org.Pt.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: geneXtendeR, goSorensen, rrvgo dependencyCount: 46 Package: org.Rn.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b3c38250a9c848390589cbecd663fc69 NeedsCompilation: no Title: Genome wide annotation for Rat Description: Genome wide annotation for Rat, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Rattus_norvegicus, ratLLMappings Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/org.Rn.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: adme16cod.db, clariomsrathttranscriptcluster.db, clariomsrattranscriptcluster.db, htrat230pm.db, htratfocus.db, illuminaRatv1.db, lumiRatAll.db, r10kcod.db, rae230a.db, rae230b.db, raex10stprobeset.db, raex10sttranscriptcluster.db, ragene10stprobeset.db, ragene10sttranscriptcluster.db, ragene11stprobeset.db, ragene11sttranscriptcluster.db, ragene20stprobeset.db, ragene20sttranscriptcluster.db, ragene21stprobeset.db, ragene21sttranscriptcluster.db, rat2302.db, Rattus.norvegicus, rgu34a.db, rgu34b.db, rgu34c.db, rguatlas4k.db, rgug4105a.db, rgug4130a.db, rgug4131a.db, ri16cod.db, RnAgilentDesign028282.db, rnu34.db, rta10probeset.db, rta10transcriptcluster.db, rtu34.db, rwgcod.db importsMe: chipenrich, CoSIA, EGSEA, geneXtendeR suggestsMe: annotatr, goSorensen, GRaNIE, MLP, multiGSEA, NetSAM, PhosR, RnBeads, rrvgo, chipenrich.data, SeedMatchR dependencyCount: 46 Package: org.Sc.sgd.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: bbd0c3aa1aa0277c0a72d504042f9eea NeedsCompilation: no Title: Genome wide annotation for Yeast Description: Genome wide annotation for Yeast, primarily based on mapping using ORF identifiers from SGD. biocViews: OrgDb, AnnotationData, Saccharomyces_cerevisiae Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae source.ver: src/contrib/org.Sc.sgd.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: LiquidAssociation, yeast2.db, ygs98.db, generegulation importsMe: apComplex suggestsMe: AnnotationDbi, Category, DAPAR, epiNEM, fastLiquidAssociation, FGNet, geneXtendeR, goSorensen, NetSAM, NoRCE, ReportingTools, rrvgo, SANTA, weitrix, leeBamViews, yeastExpData, sand dependencyCount: 46 Package: org.Ss.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: bbcc19e949a008100b54f4d336a55be3 NeedsCompilation: no Title: Genome wide annotation for Pig Description: Genome wide annotation for Pig, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Sus_scrofa Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Sus scrofa source.ver: src/contrib/org.Ss.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: porcine.db suggestsMe: geneXtendeR, goSorensen, multiGSEA, rrvgo dependencyCount: 46 Package: org.Xl.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 4fb37259b7169c9b62b605604f3fc0de NeedsCompilation: no Title: Genome wide annotation for Xenopus Description: Genome wide annotation for Xenopus, primarily based on mapping using Entrez Gene identifiers. biocViews: OrgDb, AnnotationData, Xenopus_laevis Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Xenopus laevis source.ver: src/contrib/org.Xl.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: xlaevis.db suggestsMe: geneXtendeR, goSorensen, multiGSEA, rrvgo dependencyCount: 46 Package: Orthology.eg.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 09c5048fda8f1df91892305c09f38227 NeedsCompilation: no Title: Orthology mapping package Description: Orthology mapping package, based on data from NCBI, using NCBI Gene IDs and Taxonomy IDs. biocViews: OrthologyDb, AnnotationData, FunctionalAnnotation Author: Marc Carlson Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/Orthology.eg.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: paeg1acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 73af974112051db0f715518393e84726 NeedsCompilation: no Title: paeg1acdf Description: A package containing an environment representing the Pae_G1a.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, paeg1a, Pseudomonas_aeruginosa Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/paeg1acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: paeg1aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 493fa1fc7b92a78c8114b65038113c42 NeedsCompilation: no Title: Probe sequence data for microarrays of type paeg1a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was P\_aeg1a\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, paeg1a, Pseudomonas_aeruginosa Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/paeg1aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: PANTHER.db Version: 1.0.12 Depends: AnnotationDbi,AnnotationHub,utils,methods,RSQLite Imports: BiocFileCache (>= 1.10.1) Suggests: RUnit,knitr,BiocStyle,rmarkdown License: Artistic-2.0 MD5sum: edafd1c94f2f1cf3975f525fae7a9b83 NeedsCompilation: no Title: A set of annotation maps describing the entire PANTHER Gene Ontology Description: A set of annotation maps describing the entire Gene Ontology assembled using data from PANTHER. biocViews: FunctionalAnnotation,AnnotationHub,AnnotationData Author: Julius Muller [aut, cre] () Maintainer: Julius Muller VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/PANTHER.db git_branch: devel git_last_commit: 4549c6b git_last_commit_date: 2023-10-02 Date/Publication: 2023-10-11 source.ver: src/contrib/PANTHER.db_1.0.12.tar.gz vignettes: vignettes/PANTHER.db/inst/doc/PANTHER.db.html vignetteTitles: PANTHER.db: An annotation package to access the PANTHER Classification System hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/PANTHER.db/inst/doc/PANTHER.db.R suggestsMe: sparrow dependencyCount: 66 Package: PartheenMetaData.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 1c9fd27e13a341b9aba9a235a67ce978 NeedsCompilation: no Title: PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData) Description: PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData) assembled using data from public repositories biocViews: ChipDb, AnnotationData, Swegene DNA Microarray Resource Centre, Lund, SwedenChip, Homo_sapiens, PartheenMetaData Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Swegene DNA Microarray Resource Centre, Lund, Sweden source.ver: src/contrib/PartheenMetaData.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: pd.081229.hg18.promoter.medip.hx1 Version: 0.99.4 Depends: R (>= 2.11.0), methods, RSQLite (>= 0.7-1), oligoClasses (>= 1.9.30), oligo (>= 1.11.18), DBI Imports: Biostrings (>= 2.13.50), IRanges (>= 1.3.89) License: Artistic-2.0 MD5sum: f3c240fa0d4503e94047be5ee323856b NeedsCompilation: no Title: Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1 Description: Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1 biocViews: AnnotationData Author: Martin Aryee Maintainer: Martin Aryee source.ver: src/contrib/pd.081229.hg18.promoter.medip.hx1_0.99.4.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.2006.07.18.hg18.refseq.promoter Version: 1.8.1 Depends: R (>= 2.15.0), methods, RSQLite (>= 0.11.1), oligoClasses (>= 1.19.41), oligo (>= 1.21.5), DBI Imports: Biostrings (>= 2.25.12), IRanges (>= 1.15.43) License: Artistic-2.0 MD5sum: 00838332d75b82d212078a9957f495df NeedsCompilation: no Title: Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter Description: Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter biocViews: AnnotationData Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.2006.07.18.hg18.refseq.promoter_1.8.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: oligoData dependencyCount: 65 Package: pd.2006.07.18.mm8.refseq.promoter Version: 0.99.3 Depends: R (>= 2.11.0), methods, RSQLite (>= 0.7-1), oligoClasses (>= 1.9.30), oligo (>= 1.11.18), DBI Imports: Biostrings (>= 2.13.50), IRanges (>= 1.3.89) License: Artistic-2.0 MD5sum: 084b0a6759fd96d1bc775dd4c66c42b0 NeedsCompilation: no Title: Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter Description: Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter biocViews: AnnotationData Author: Martin Aryee Maintainer: Martin Aryee source.ver: src/contrib/pd.2006.07.18.mm8.refseq.promoter_0.99.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.2006.10.31.rn34.refseq.promoter Version: 0.99.3 Depends: R (>= 2.11.0), methods, RSQLite (>= 0.7-1), oligoClasses (>= 1.9.30), oligo (>= 1.11.18), DBI Imports: Biostrings (>= 2.13.50), IRanges (>= 1.3.89) License: Artistic-2.0 MD5sum: ab5bb767ad29b213e5a969a5fc51ee7d NeedsCompilation: no Title: Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter Description: Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter biocViews: AnnotationData Author: Martin Aryee Maintainer: Martin Aryee source.ver: src/contrib/pd.2006.10.31.rn34.refseq.promoter_0.99.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ag Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 21fb288536568ff010ad4847b671f9d6 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name AG Description: Platform Design Info for The Manufacturer's Name AG biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ag_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.aragene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: ff87a0793fd4b713c4a45b6c1d4a4977 NeedsCompilation: no Title: Platform Design Info for Affymetrix AraGene-1_0-st Description: Platform Design Info for Affymetrix AraGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.aragene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.aragene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 828ad790eb2495e396d7fcd9bcbf9133 NeedsCompilation: no Title: Platform Design Info for Affymetrix AraGene-1_1-st Description: Platform Design Info for Affymetrix AraGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.aragene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ath1.121501 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: d7ed8640f0deac552e0083a091e72a72 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name ATH1-121501 Description: Platform Design Info for The Manufacturer's Name ATH1-121501 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ath1.121501_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.barley1 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: b8d11f5ad42e75f7a91931b46d449c1a NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Barley1 Description: Platform Design Info for The Manufacturer's Name Barley1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.barley1_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.bovgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 6e9747d13aee7825722562ccc49ad35f NeedsCompilation: no Title: Platform Design Info for Affymetrix BovGene-1_0-st Description: Platform Design Info for Affymetrix BovGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.bovgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.bovgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 342246c0a76755fcca458cd723b3e98e NeedsCompilation: no Title: Platform Design Info for Affymetrix BovGene-1_1-st Description: Platform Design Info for Affymetrix BovGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.bovgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.bovine Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 6c7026dba53b54b547b1f1e135d043b3 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Bovine Description: Platform Design Info for The Manufacturer's Name Bovine biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.bovine_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.bsubtilis Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 2261d8b0ec178beb432d71eafd90ec9a NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Bsubtilis Description: Platform Design Info for The Manufacturer's Name Bsubtilis biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.bsubtilis_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.cangene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 0a39d6378193e3f7d31a7210f6766eaf NeedsCompilation: no Title: Platform Design Info for Affymetrix CanGene-1_0-st Description: Platform Design Info for Affymetrix CanGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.cangene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.cangene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 946074601e7bee72f3b3dd6ae6b3bc33 NeedsCompilation: no Title: Platform Design Info for Affymetrix CanGene-1_1-st Description: Platform Design Info for Affymetrix CanGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.cangene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.canine Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 5b40fe9e40d0b7f36d338e413d121ba7 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Canine Description: Platform Design Info for The Manufacturer's Name Canine biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.canine_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.canine.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: bc918d1953a3c7ac7168b60a53405a93 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Canine_2 Description: Platform Design Info for The Manufacturer's Name Canine_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.canine.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.celegans Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: b90ea2e071522bb340c103a1c8270205 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Celegans Description: Platform Design Info for The Manufacturer's Name Celegans biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.celegans_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.charm.hg18.example Version: 0.99.4 Depends: R (>= 2.11.0), methods, RSQLite (>= 0.7-1), oligoClasses (>= 1.9.30), oligo (>= 1.11.18), DBI Imports: Biostrings (>= 2.29.2), IRanges (>= 1.19.5) License: Artistic-2.0 MD5sum: e201d4281a23c202f57bae1135e226b4 NeedsCompilation: no Title: Platform Design Info for NimbleGen charm_hg18_example Description: Platform Design Info for NimbleGen charm_hg18_example biocViews: AnnotationData Author: Martin Aryee Maintainer: Martin Aryee source.ver: src/contrib/pd.charm.hg18.example_0.99.4.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.chicken Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: af79b6d0910621910e72ea374499e5eb NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Chicken Description: Platform Design Info for The Manufacturer's Name Chicken biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.chicken_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.chigene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: e37cb047678fabb1801109d4efd16773 NeedsCompilation: no Title: Platform Design Info for Affymetrix ChiGene-1_0-st Description: Platform Design Info for Affymetrix ChiGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.chigene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.chigene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: bec602b45961607f5a4571977d54e015 NeedsCompilation: no Title: Platform Design Info for Affymetrix ChiGene-1_1-st Description: Platform Design Info for Affymetrix ChiGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.chigene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.chogene.2.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 641718e3d172838185a200bac3d32433 NeedsCompilation: no Title: Platform Design Info for Affymetrix CHOGene-2_0-st Description: Platform Design Info for Affymetrix CHOGene-2_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.chogene.2.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.chogene.2.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: ed25825e58a514cdde70b961bce9b4d7 NeedsCompilation: no Title: Platform Design Info for Affymetrix CHOGene-2_1-st Description: Platform Design Info for Affymetrix CHOGene-2_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.chogene.2.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.citrus Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: dee9b3298b84e7dd5152f48ad449b15a NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Citrus Description: Platform Design Info for The Manufacturer's Name Citrus biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.citrus_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.clariom.d.human Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9d3505af53cc7c99980f29c527f0f37d NeedsCompilation: no Title: Platform Design Info for Affymetrix Clariom_D_Human Description: Platform Design Info for Affymetrix Clariom_D_Human biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.clariom.d.human_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.clariom.s.human Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 797afe8a6a8041453a34ced3cce34884 NeedsCompilation: no Title: Platform Design Info for Affymetrix Clariom_S_Human Description: Platform Design Info for Affymetrix Clariom_S_Human biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.clariom.s.human_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.clariom.s.human.ht Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 90f910bea1b1aeb550a3f1bdd91d1a06 NeedsCompilation: no Title: Platform Design Info for Affymetrix Clariom_S_Human_HT Description: Platform Design Info for Affymetrix Clariom_S_Human_HT biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.clariom.s.human.ht_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.clariom.s.mouse Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: e3e4ce2b22a78faf525dd6c0c0b2a42d NeedsCompilation: no Title: Platform Design Info for Affymetrix Clariom_S_Mouse Description: Platform Design Info for Affymetrix Clariom_S_Mouse biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.clariom.s.mouse_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.clariom.s.mouse.ht Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9cb6f77cf9666a0d54e1eacb904fd57c NeedsCompilation: no Title: Platform Design Info for Affymetrix Clariom_S_Mouse_HT Description: Platform Design Info for Affymetrix Clariom_S_Mouse_HT biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.clariom.s.mouse.ht_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.clariom.s.rat Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: be464b3eaea8eb8bdbcca6047fce4dea NeedsCompilation: no Title: Platform Design Info for Affymetrix Clariom_S_Rat Description: Platform Design Info for Affymetrix Clariom_S_Rat biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.clariom.s.rat_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.clariom.s.rat.ht Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: be901eb9e8830f3e5bedf154189a3743 NeedsCompilation: no Title: Platform Design Info for Affymetrix Clariom_S_Rat_HT Description: Platform Design Info for Affymetrix Clariom_S_Rat_HT biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.clariom.s.rat.ht_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.cotton Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 78c408902bcefb8c695119767534b393 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Cotton Description: Platform Design Info for The Manufacturer's Name Cotton biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.cotton_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.cyngene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 784fac6cc92a0fe46dae32c9b737812a NeedsCompilation: no Title: Platform Design Info for Affymetrix CynGene-1_0-st Description: Platform Design Info for Affymetrix CynGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.cyngene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.cyngene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: a6217267e3e08a15f70c600918c7d4f6 NeedsCompilation: no Title: Platform Design Info for Affymetrix CynGene-1_1-st Description: Platform Design Info for Affymetrix CynGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.cyngene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.cyrgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 63228c07d3d16d6c62e9c0e83f10a855 NeedsCompilation: no Title: Platform Design Info for Affymetrix CyRGene-1_0-st Description: Platform Design Info for Affymetrix CyRGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.cyrgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.cyrgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: dbe3bb580b96aaddcc597de45159320d NeedsCompilation: no Title: Platform Design Info for Affymetrix CyRGene-1_1-st Description: Platform Design Info for Affymetrix CyRGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.cyrgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.cytogenetics.array Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 8c359ff56a9a558d370dc9a6a54218e0 NeedsCompilation: no Title: Platform Design Info for Affymetrix Cytogenetics_Array Description: Platform Design Info for Affymetrix Cytogenetics_Array biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.cytogenetics.array_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.drogene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 67f92a97a5b78a95693edfdd32b67e93 NeedsCompilation: no Title: Platform Design Info for Affymetrix DroGene-1_0-st Description: Platform Design Info for Affymetrix DroGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.drogene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.drogene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 5c63236ea91390d49dbabea63a48f0a2 NeedsCompilation: no Title: Platform Design Info for Affymetrix DroGene-1_1-st Description: Platform Design Info for Affymetrix DroGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.drogene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.drosgenome1 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 59c1a37a7d6a43fc70ff8756bf1195ef NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name DrosGenome1 Description: Platform Design Info for The Manufacturer's Name DrosGenome1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.drosgenome1_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.drosophila.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: ddb821e35e722af8dcf0807c6da4fac1 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Drosophila_2 Description: Platform Design Info for The Manufacturer's Name Drosophila_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.drosophila.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.e.coli.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9176faa60a0c252a815b2a74d2f63dd4 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name E_coli_2 Description: Platform Design Info for The Manufacturer's Name E_coli_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.e.coli.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ecoli Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 077e91b2567a32780305f0fb6b126fe9 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Ecoli Description: Platform Design Info for The Manufacturer's Name Ecoli biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ecoli_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ecoli.asv2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: d789ddf5a178a9a50c5587ee3ab294a4 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Ecoli_ASv2 Description: Platform Design Info for The Manufacturer's Name Ecoli_ASv2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ecoli.asv2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.elegene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: b6110c58d5964703c7117e5e0668c901 NeedsCompilation: no Title: Platform Design Info for Affymetrix EleGene-1_0-st Description: Platform Design Info for Affymetrix EleGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.elegene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.elegene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 1dbe166ea347a5a7e240db925d2081c7 NeedsCompilation: no Title: Platform Design Info for Affymetrix EleGene-1_1-st Description: Platform Design Info for Affymetrix EleGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.elegene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.equgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 3448f36fdb899f04702be37ffab4c4c7 NeedsCompilation: no Title: Platform Design Info for Affymetrix EquGene-1_0-st Description: Platform Design Info for Affymetrix EquGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.equgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.equgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: bed32525513ce25f14d433ce805e7d6c NeedsCompilation: no Title: Platform Design Info for Affymetrix EquGene-1_1-st Description: Platform Design Info for Affymetrix EquGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.equgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.feinberg.hg18.me.hx1 Version: 0.99.3 Depends: R (>= 2.11.0), methods, RSQLite (>= 0.7-1), oligoClasses (>= 1.9.30), oligo (>= 1.11.18), DBI Imports: Biostrings (>= 2.13.50), IRanges (>= 1.3.89) License: Artistic-2.0 MD5sum: b6eeaf79671bab6f597965009516ce57 NeedsCompilation: no Title: Platform Design Info for NimbleGen feinberg_hg18_me_hx1 Description: Platform Design Info for NimbleGen feinberg_hg18_me_hx1 biocViews: AnnotationData Author: Martin Aryee Maintainer: Martin Aryee source.ver: src/contrib/pd.feinberg.hg18.me.hx1_0.99.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.feinberg.mm8.me.hx1 Version: 0.99.3 Depends: R (>= 2.11.0), methods, RSQLite (>= 0.7-1), oligoClasses (>= 1.9.30), oligo (>= 1.11.18), DBI Imports: Biostrings (>= 2.13.50), IRanges (>= 1.3.89) License: Artistic-2.0 MD5sum: 7332102b69fc9ee087f52d3cdc311d00 NeedsCompilation: no Title: Platform Design Info for NimbleGen feinberg_mm8_me_hx1 Description: Platform Design Info for NimbleGen feinberg_mm8_me_hx1 biocViews: AnnotationData Author: Martin Aryee Maintainer: Martin Aryee source.ver: src/contrib/pd.feinberg.mm8.me.hx1_0.99.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.felgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: b7ac0a5cbde5f248aac5d0a7422bd88d NeedsCompilation: no Title: Platform Design Info for Affymetrix FelGene-1_0-st Description: Platform Design Info for Affymetrix FelGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.felgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.felgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 734807a7f3608f6c44c76df7eee04c99 NeedsCompilation: no Title: Platform Design Info for Affymetrix FelGene-1_1-st Description: Platform Design Info for Affymetrix FelGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.felgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.fingene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: b79e4f8a52cad3b62e32401bbe74603d NeedsCompilation: no Title: Platform Design Info for Affymetrix FinGene-1_0-st Description: Platform Design Info for Affymetrix FinGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.fingene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.fingene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 29030b14a0e8f8073874fb694a8c0c09 NeedsCompilation: no Title: Platform Design Info for Affymetrix FinGene-1_1-st Description: Platform Design Info for Affymetrix FinGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.fingene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.genomewidesnp.5 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: d02255c861e82fca6a7445ada0c69e5d NeedsCompilation: no Title: Platform Design Info for Affymetrix GenomeWideSNP_5 Description: Platform Design Info for Affymetrix GenomeWideSNP_5 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.genomewidesnp.5_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: cn.farms, oligoClasses dependencyCount: 65 Package: pd.genomewidesnp.6 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 6e5369234e251c763f4f6c0220fbcb0c NeedsCompilation: no Title: Platform Design Info for Affymetrix GenomeWideSNP_6 Description: Platform Design Info for Affymetrix GenomeWideSNP_6 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.genomewidesnp.6_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: CINdex, cn.farms, oligoClasses dependencyCount: 65 Package: pd.guigene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 29fe31499931836af72ddd0c7d06acfa NeedsCompilation: no Title: Platform Design Info for Affymetrix GuiGene-1_0-st Description: Platform Design Info for Affymetrix GuiGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.guigene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.guigene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: aa3e0389c596a3676322104de5ad2358 NeedsCompilation: no Title: Platform Design Info for Affymetrix GuiGene-1_1-st Description: Platform Design Info for Affymetrix GuiGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.guigene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hc.g110 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 5c5418c588ed28e2fa088c7952c48b91 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HC_G110 Description: Platform Design Info for The Manufacturer's Name HC_G110 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hc.g110_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.focus Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: a89f344ae7ff8061a8e7968f155f4bcf NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG-Focus Description: Platform Design Info for The Manufacturer's Name HG-Focus biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.focus_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u133.plus.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 8a87aa63c04e84266962bdde5226c06c NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG-U133_Plus_2 Description: Platform Design Info for The Manufacturer's Name HG-U133_Plus_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u133.plus.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: RCPA dependencyCount: 65 Package: pd.hg.u133a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 05b4521f65ab294a5040a0c60198d22c NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG-U133A Description: Platform Design Info for The Manufacturer's Name HG-U133A biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u133a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u133a.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: a7941473bf081831fad4f4412023d9ee NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG-U133A_2 Description: Platform Design Info for The Manufacturer's Name HG-U133A_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u133a.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u133a.tag Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: e090383098d6e1062b290889fba065d5 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG-U133A_tag Description: Platform Design Info for The Manufacturer's Name HG-U133A_tag biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u133a.tag_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u133b Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: c5eac82ad7480571b9f2b442b4a8faa6 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG-U133B Description: Platform Design Info for The Manufacturer's Name HG-U133B biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u133b_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u219 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: dab073d315af47ff3001c72a6d1e7972 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG-U219 Description: Platform Design Info for The Manufacturer's Name HG-U219 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u219_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u95a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: a9ad7d6a085e0e3ed7623902e7810da0 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG_U95A Description: Platform Design Info for The Manufacturer's Name HG_U95A biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u95a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: SCAN.UPC dependencyCount: 65 Package: pd.hg.u95av2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 3a4182b529bc07ec91277a95b1462468 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG_U95Av2 Description: Platform Design Info for The Manufacturer's Name HG_U95Av2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u95av2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: oligo, oligoData dependencyCount: 65 Package: pd.hg.u95b Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: a7f10f91e920e191c5009fac8ca79c24 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG_U95B Description: Platform Design Info for The Manufacturer's Name HG_U95B biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u95b_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u95c Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 85655bf7a9ecd7aaa867e05899c5e3e4 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG_U95C Description: Platform Design Info for The Manufacturer's Name HG_U95C biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u95c_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u95d Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 946701ecfc9cccb46aaeb57a4d6fe1c5 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG_U95D Description: Platform Design Info for The Manufacturer's Name HG_U95D biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u95d_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg.u95e Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9295e2fd1b4be6ff58477ea5a5de45ee NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HG_U95E Description: Platform Design Info for The Manufacturer's Name HG_U95E biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg.u95e_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hg18.60mer.expr Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: ee8d3813f74edce4e796933aa63999fb NeedsCompilation: no Title: Platform Design Info for NimbleGen hg18_60mer_expr Description: Platform Design Info for NimbleGen hg18_60mer_expr biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hg18.60mer.expr_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: oligo, oligoData dependencyCount: 65 Package: pd.ht.hg.u133.plus.pm Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 5b1c3dd0ab3f8b21154982c197512a7c NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM Description: Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ht.hg.u133.plus.pm_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ht.hg.u133a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 80a82f43083f95e1e9f5e2e2da2e288e NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HT_HG-U133A Description: Platform Design Info for The Manufacturer's Name HT_HG-U133A biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ht.hg.u133a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ht.mg.430a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 65ea4fae22d21ad70998ba3ea034dcc0 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name HT_MG-430A Description: Platform Design Info for The Manufacturer's Name HT_MG-430A biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ht.mg.430a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hta.2.0 Version: 3.12.2 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 8e13f85ece49c38da73eaf7b2247f5f0 NeedsCompilation: no Title: Platform Design Info for Affymetrix HTA-2_0 Description: Platform Design Info for Affymetrix HTA-2_0 biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.hta.2.0_3.12.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hu6800 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9a3a3edde6d6f31b9e90dc32aa68875d NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Hu6800 Description: Platform Design Info for The Manufacturer's Name Hu6800 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hu6800_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.huex.1.0.st.v2 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: f4c4836c53447890b75b012efbdef3e9 NeedsCompilation: no Title: Platform Design Info for Affymetrix HuEx-1_0-st-v2 Description: Platform Design Info for Affymetrix HuEx-1_0-st-v2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.huex.1.0.st.v2_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: frmaTools, oligo, oligoData dependencyCount: 65 Package: pd.hugene.1.0.st.v1 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 8cb24c351aee5bf216180e4b19742506 NeedsCompilation: no Title: Platform Design Info for Affymetrix HuGene-1_0-st-v1 Description: Platform Design Info for Affymetrix HuGene-1_0-st-v1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hugene.1.0.st.v1_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: maEndToEnd suggestsMe: frmaTools, mimager, oligo, oligoData dependencyCount: 65 Package: pd.hugene.1.1.st.v1 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 7a17ee4f7d258792be1d21be7d03deb0 NeedsCompilation: no Title: Platform Design Info for Affymetrix HuGene-1_1-st-v1 Description: Platform Design Info for Affymetrix HuGene-1_1-st-v1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hugene.1.1.st.v1_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hugene.2.0.st Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: e484209aa0c2a839c3445d91c1a799ce NeedsCompilation: no Title: Platform Design Info for Affymetrix HuGene-2_0-st Description: Platform Design Info for Affymetrix HuGene-2_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hugene.2.0.st_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.hugene.2.1.st Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 164227f10b87f87059e4ae27b40f5238 NeedsCompilation: no Title: Platform Design Info for Affymetrix HuGene-2_1-st Description: Platform Design Info for Affymetrix HuGene-2_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.hugene.2.1.st_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.maize Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: a1689518c8525d3dfa97e870f90b7a7b NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Maize Description: Platform Design Info for The Manufacturer's Name Maize biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.maize_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mapping250k.nsp Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 2786d00e1d621a9c415a599b4afe838b NeedsCompilation: no Title: Platform Design Info for Affymetrix Mapping250K_Nsp Description: Platform Design Info for Affymetrix Mapping250K_Nsp biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mapping250k.nsp_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: cn.farms, ITALICS, oligoClasses dependencyCount: 65 Package: pd.mapping250k.sty Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 0db5992855eaf9b8f61f8bc2e57ef347 NeedsCompilation: no Title: Platform Design Info for Affymetrix Mapping250K_Sty Description: Platform Design Info for Affymetrix Mapping250K_Sty biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mapping250k.sty_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: cn.farms, ITALICS, oligoClasses dependencyCount: 65 Package: pd.mapping50k.hind240 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 83615dcb01eb381f0c69e07504809094 NeedsCompilation: no Title: Platform Design Info for Affymetrix Mapping50K_Hind240 Description: Platform Design Info for Affymetrix Mapping50K_Hind240 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mapping50k.hind240_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: ITALICS, oligoClasses dependencyCount: 65 Package: pd.mapping50k.xba240 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: eb0f9250fe0d7b590ca9938fee88f2e7 NeedsCompilation: no Title: Platform Design Info for Affymetrix Mapping50K_Xba240 Description: Platform Design Info for Affymetrix Mapping50K_Xba240 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mapping50k.xba240_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: ITALICS suggestsMe: oligo, oligoClasses, oligoData dependencyCount: 65 Package: pd.margene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: f670b192e4b453f13bb7cae154b5de42 NeedsCompilation: no Title: Platform Design Info for Affymetrix MarGene-1_0-st Description: Platform Design Info for Affymetrix MarGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.margene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.margene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: efd71aeb9c5ab36c2ddeccf9cb66ddec NeedsCompilation: no Title: Platform Design Info for Affymetrix MarGene-1_1-st Description: Platform Design Info for Affymetrix MarGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.margene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.medgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 2a0048ccd5310ec5c45bb691f3c25885 NeedsCompilation: no Title: Platform Design Info for Affymetrix MedGene-1_0-st Description: Platform Design Info for Affymetrix MedGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.medgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.medgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: d96894cfea509734af62110311100142 NeedsCompilation: no Title: Platform Design Info for Affymetrix MedGene-1_1-st Description: Platform Design Info for Affymetrix MedGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.medgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.medicago Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 0e3f00777919374619a9dc8244167068 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Medicago Description: Platform Design Info for The Manufacturer's Name Medicago biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.medicago_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mg.u74a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: a855c7d2b80e9b8f9bbc1a3f83aca799 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name MG_U74A Description: Platform Design Info for The Manufacturer's Name MG_U74A biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mg.u74a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mg.u74av2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 01c6e4da9c2ad0f1939482284dd5b421 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name MG_U74Av2 Description: Platform Design Info for The Manufacturer's Name MG_U74Av2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mg.u74av2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mg.u74b Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 47bb81abaceba6dfaab3e0987f28706c NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name MG_U74B Description: Platform Design Info for The Manufacturer's Name MG_U74B biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mg.u74b_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mg.u74bv2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: dbb6cd5b16bd5cafbf654744bc2d5c5c NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name MG_U74Bv2 Description: Platform Design Info for The Manufacturer's Name MG_U74Bv2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mg.u74bv2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mg.u74c Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 01f10eae99481f03d1d5a6a2c2f01733 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name MG_U74C Description: Platform Design Info for The Manufacturer's Name MG_U74C biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mg.u74c_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mg.u74cv2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: b60943b90b95a24fcf93f8c245fd88be NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name MG_U74Cv2 Description: Platform Design Info for The Manufacturer's Name MG_U74Cv2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mg.u74cv2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mirna.1.0 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 8dfeb82a9da6d6f73e5fb716a2867a34 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name miRNA-1_0 Description: Platform Design Info for The Manufacturer's Name miRNA-1_0 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mirna.1.0_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mirna.2.0 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: aab53cbc62fbd7727ca0303aeb1dca13 NeedsCompilation: no Title: Platform Design Info for Affymetrix miRNA-2_0 Description: Platform Design Info for Affymetrix miRNA-2_0 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mirna.2.0_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mirna.3.0 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 1265f1969c618b3b5121e6a77ba57009 NeedsCompilation: no Title: Platform Design Info for Affymetrix miRNA-3_0 Description: Platform Design Info for Affymetrix miRNA-3_0 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mirna.3.0_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mirna.3.1 Version: 3.8.1 Depends: R (>= 2.15.0), methods, RSQLite (>= 0.11.1), oligoClasses (>= 1.19.41), oligo (>= 1.21.5), DBI Imports: Biostrings (>= 2.25.12), IRanges (>= 1.15.43) License: Artistic-2.0 MD5sum: 296b3584ee5e9416c9018353d3e29c6c NeedsCompilation: no Title: Platform Design Info for Affymetrix miRNA-3_1 Description: Platform Design Info for Affymetrix miRNA-3_1 biocViews: AnnotationData Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mirna.3.1_3.8.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mirna.4.0 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: cae1a18c02aaa20a2f05172103e9d938 NeedsCompilation: no Title: Platform Design Info for Affymetrix miRNA-4_0 Description: Platform Design Info for Affymetrix miRNA-4_0 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mirna.4.0_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.moe430a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: f9a7cb62140e42c2a82177548a1c73fb NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name MOE430A Description: Platform Design Info for The Manufacturer's Name MOE430A biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.moe430a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.moe430b Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: c19d2ee5e7e87703cf73afa33a5f3156 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name MOE430B Description: Platform Design Info for The Manufacturer's Name MOE430B biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.moe430b_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.moex.1.0.st.v1 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 57427e63b2d44258c12d796eada1897b NeedsCompilation: no Title: Platform Design Info for Affymetrix MoEx-1_0-st-v1 Description: Platform Design Info for Affymetrix MoEx-1_0-st-v1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.moex.1.0.st.v1_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mogene.1.0.st.v1 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: c3767385af3b9a120c777adb6d6e3364 NeedsCompilation: no Title: Platform Design Info for Affymetrix MoGene-1_0-st-v1 Description: Platform Design Info for Affymetrix MoGene-1_0-st-v1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mogene.1.0.st.v1_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mogene.1.1.st.v1 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 3d6c5d29e4d8a0b0152e109b68f82c37 NeedsCompilation: no Title: Platform Design Info for Affymetrix MoGene-1_1-st-v1 Description: Platform Design Info for Affymetrix MoGene-1_1-st-v1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mogene.1.1.st.v1_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mogene.2.0.st Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 71326d6bd85de02490171696f923d053 NeedsCompilation: no Title: Platform Design Info for Affymetrix MoGene-2_0-st Description: Platform Design Info for Affymetrix MoGene-2_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mogene.2.0.st_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mogene.2.1.st Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 2c7fc5644eae98359cb945ff16d072a2 NeedsCompilation: no Title: Platform Design Info for Affymetrix MoGene-2_1-st Description: Platform Design Info for Affymetrix MoGene-2_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mogene.2.1.st_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mouse430.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 7f37397a57b06d15101ef86fa6242ca4 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Mouse430_2 Description: Platform Design Info for The Manufacturer's Name Mouse430_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mouse430.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mouse430a.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 0c28f564a1fa23f59c936d42c156796d NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Mouse430A_2 Description: Platform Design Info for The Manufacturer's Name Mouse430A_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mouse430a.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mta.1.0 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 0f737b4f1f1353733e56e2df637f554b NeedsCompilation: no Title: Platform Design Info for Affymetrix MTA-1_0 Description: Platform Design Info for Affymetrix MTA-1_0 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mta.1.0_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mu11ksuba Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 56be58b3f444ccb9572dc4c3882964b2 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Mu11KsubA Description: Platform Design Info for The Manufacturer's Name Mu11KsubA biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mu11ksuba_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.mu11ksubb Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: c45b0ebe777b99cec38499826cc1b457 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Mu11KsubB Description: Platform Design Info for The Manufacturer's Name Mu11KsubB biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.mu11ksubb_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.nugo.hs1a520180 Version: 3.4.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 88a836472f0f9aab2e1d54e4bad7d6af NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180 Description: Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180 biocViews: AnnotationData, oligo Author: Philip de Groot Maintainer: Philip de Groot source.ver: src/contrib/pd.nugo.hs1a520180_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.nugo.mm1a520177 Version: 3.4.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 5cd64895eaddaf4cae1c48db9468c079 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name NuGO_Mm1a520177 Description: Platform Design Info for The Manufacturer's Name NuGO_Mm1a520177 biocViews: AnnotationData, oligo Author: Philip de Groot Maintainer: Philip de Groot source.ver: src/contrib/pd.nugo.mm1a520177_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ovigene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 88cfedfe10dd357539305051a69d31a1 NeedsCompilation: no Title: Platform Design Info for Affymetrix OviGene-1_0-st Description: Platform Design Info for Affymetrix OviGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ovigene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ovigene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: d6158cacd32a1892975fddd8dc8bb3f2 NeedsCompilation: no Title: Platform Design Info for Affymetrix OviGene-1_1-st Description: Platform Design Info for Affymetrix OviGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ovigene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.pae.g1a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: d96462eb35c63b30772bccae2a27a8cd NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Pae_G1a Description: Platform Design Info for The Manufacturer's Name Pae_G1a biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.pae.g1a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.plasmodium.anopheles Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: ae55b1451ceaed951f68213c0433f3d0 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles Description: Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.plasmodium.anopheles_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.poplar Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9c33b7528e5a47654aeacf61b71058a8 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Poplar Description: Platform Design Info for The Manufacturer's Name Poplar biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.poplar_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.porcine Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 5df404babadb1d6faef73e249c819a72 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Porcine Description: Platform Design Info for The Manufacturer's Name Porcine biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.porcine_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.porgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 203fc56b0e2904fa7063c4a325e038f1 NeedsCompilation: no Title: Platform Design Info for Affymetrix PorGene-1_0-st Description: Platform Design Info for Affymetrix PorGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.porgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.porgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 3a31d325861925a7428241207c461a1d NeedsCompilation: no Title: Platform Design Info for Affymetrix PorGene-1_1-st Description: Platform Design Info for Affymetrix PorGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.porgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rabgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 7f1e33f4767a4c4653bdaff2b79989a0 NeedsCompilation: no Title: Platform Design Info for Affymetrix RabGene-1_0-st Description: Platform Design Info for Affymetrix RabGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rabgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rabgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 2492695661309f5e6628612685460ee5 NeedsCompilation: no Title: Platform Design Info for Affymetrix RabGene-1_1-st Description: Platform Design Info for Affymetrix RabGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rabgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rae230a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: fa4a1c29d3457b1db82b1010c5f72412 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name RAE230A Description: Platform Design Info for The Manufacturer's Name RAE230A biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rae230a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rae230b Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 10e2e70bb7538119127cd65f636f93b6 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name RAE230B Description: Platform Design Info for The Manufacturer's Name RAE230B biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rae230b_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.raex.1.0.st.v1 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: e2160b549f63ffcc9222d88d82d4d393 NeedsCompilation: no Title: Platform Design Info for Affymetrix RaEx-1_0-st-v1 Description: Platform Design Info for Affymetrix RaEx-1_0-st-v1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.raex.1.0.st.v1_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ragene.1.0.st.v1 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 122cb69603e705218d01d70f48e90cad NeedsCompilation: no Title: Platform Design Info for Affymetrix RaGene-1_0-st-v1 Description: Platform Design Info for Affymetrix RaGene-1_0-st-v1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ragene.1.0.st.v1_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ragene.1.1.st.v1 Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 7301ab6472849395ccb800c39807e969 NeedsCompilation: no Title: Platform Design Info for Affymetrix RaGene-1_1-st-v1 Description: Platform Design Info for Affymetrix RaGene-1_1-st-v1 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ragene.1.1.st.v1_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ragene.2.0.st Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 37157b09f009fef368b54e47711c313b NeedsCompilation: no Title: Platform Design Info for Affymetrix RaGene-2_0-st Description: Platform Design Info for Affymetrix RaGene-2_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ragene.2.0.st_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.ragene.2.1.st Version: 3.14.1 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 53adfa5ff2c7e466da83b807dbc7b237 NeedsCompilation: no Title: Platform Design Info for Affymetrix RaGene-2_1-st Description: Platform Design Info for Affymetrix RaGene-2_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.ragene.2.1.st_3.14.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rat230.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 286b1a7868ef6c795ebeb6dd8a5d5920 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Rat230_2 Description: Platform Design Info for The Manufacturer's Name Rat230_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rat230.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rcngene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9c7c5ef4d4f5ed92d9130d77a99a0685 NeedsCompilation: no Title: Platform Design Info for Affymetrix RCnGene-1_0-st Description: Platform Design Info for Affymetrix RCnGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rcngene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rcngene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9781549447d90b5423e820fff5cc6273 NeedsCompilation: no Title: Platform Design Info for Affymetrix RCnGene-1_1-st Description: Platform Design Info for Affymetrix RCnGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rcngene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rg.u34a Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: ac3a6cc203dabb8faab85b97f1a7ae3c NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name RG_U34A Description: Platform Design Info for The Manufacturer's Name RG_U34A biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rg.u34a_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rg.u34b Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 757966b66795d388c7169816d31977ad NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name RG_U34B Description: Platform Design Info for The Manufacturer's Name RG_U34B biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rg.u34b_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rg.u34c Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: bc9cb7b208972ac2901235bdabdee5b2 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name RG_U34C Description: Platform Design Info for The Manufacturer's Name RG_U34C biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rg.u34c_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rhegene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 6469add6928e663529df4df98fcdd7a8 NeedsCompilation: no Title: Platform Design Info for Affymetrix RheGene-1_0-st Description: Platform Design Info for Affymetrix RheGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rhegene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rhegene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 4f63424ab52283a95731767dce6623cd NeedsCompilation: no Title: Platform Design Info for Affymetrix RheGene-1_1-st Description: Platform Design Info for Affymetrix RheGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rhegene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rhesus Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 51efcfe1384ac956ff93bf0530965054 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Rhesus Description: Platform Design Info for The Manufacturer's Name Rhesus biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rhesus_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rice Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 9c456981b3d0b99a96ac6c71e3eb7c8a NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Rice Description: Platform Design Info for The Manufacturer's Name Rice biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rice_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rjpgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 066f5dbacc1110e42ce4d457ad3b9306 NeedsCompilation: no Title: Platform Design Info for Affymetrix RJpGene-1_0-st Description: Platform Design Info for Affymetrix RJpGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rjpgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rjpgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 265503774b15e0f4e71ac53a276a80f2 NeedsCompilation: no Title: Platform Design Info for Affymetrix RJpGene-1_1-st Description: Platform Design Info for Affymetrix RJpGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rjpgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rn.u34 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 1728c547f1383bffab330796505119ec NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name RN_U34 Description: Platform Design Info for The Manufacturer's Name RN_U34 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rn.u34_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rta.1.0 Version: 3.12.2 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 90752a892a103c7fe4cd6c86e61a61db NeedsCompilation: no Title: Platform Design Info for Affymetrix RTA-1_0 Description: Platform Design Info for Affymetrix RTA-1_0 biocViews: AnnotationData, oligo Author: James W. MacDonald Maintainer: James W. MacDonald source.ver: src/contrib/pd.rta.1.0_3.12.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rusgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 0b9b00fee58ef211e041395052344483 NeedsCompilation: no Title: Platform Design Info for Affymetrix RUSGene-1_0-st Description: Platform Design Info for Affymetrix RUSGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rusgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.rusgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 228837c2de4a4b106806cb7f384564fa NeedsCompilation: no Title: Platform Design Info for Affymetrix RUSGene-1_1-st Description: Platform Design Info for Affymetrix RUSGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.rusgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.s.aureus Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: f173ae6e4316aaa2eafbde92d5868a5a NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name S_aureus Description: Platform Design Info for The Manufacturer's Name S_aureus biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.s.aureus_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.soybean Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 6dbe167be9d40c1d9096485afb4525f0 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Soybean Description: Platform Design Info for The Manufacturer's Name Soybean biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.soybean_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.soygene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: b264df0648ec35d04f91e0ef8e26ac95 NeedsCompilation: no Title: Platform Design Info for Affymetrix SoyGene-1_0-st Description: Platform Design Info for Affymetrix SoyGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.soygene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.soygene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 4a911a4a4b5de927fe6239e500a2993f NeedsCompilation: no Title: Platform Design Info for Affymetrix SoyGene-1_1-st Description: Platform Design Info for Affymetrix SoyGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.soygene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.sugar.cane Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: bd7eb8b1a1c9ac77359358a5347330fb NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Sugar_Cane Description: Platform Design Info for The Manufacturer's Name Sugar_Cane biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.sugar.cane_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.tomato Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: ce78f6ee43d72e017608413dd4d50580 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Tomato Description: Platform Design Info for The Manufacturer's Name Tomato biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.tomato_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.u133.x3p Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: e3f343e32273667f851e26d7b8a7a5db NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name U133_X3P Description: Platform Design Info for The Manufacturer's Name U133_X3P biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.u133.x3p_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.vitis.vinifera Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 104a8ac33a9baa25a61f953679795696 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Vitis_Vinifera Description: Platform Design Info for The Manufacturer's Name Vitis_Vinifera biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.vitis.vinifera_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.wheat Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 38a7183c8d3b874cf62391a9e9169bb9 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name wheat Description: Platform Design Info for The Manufacturer's Name wheat biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.wheat_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.x.laevis.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 32416957e3cdc11ad4dbfcd9141ff113 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name X_laevis_2 Description: Platform Design Info for The Manufacturer's Name X_laevis_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.x.laevis.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.x.tropicalis Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 79a4de91831e4b0153495e12b9c6e8d3 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name X_tropicalis Description: Platform Design Info for The Manufacturer's Name X_tropicalis biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.x.tropicalis_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.xenopus.laevis Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 6d5c2c9e8e3891770b1c6e9dcd823c0d NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Xenopus_laevis Description: Platform Design Info for The Manufacturer's Name Xenopus_laevis biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.xenopus.laevis_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.yeast.2 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 780f5139ee9cda46c9e38122538ce129 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Yeast_2 Description: Platform Design Info for The Manufacturer's Name Yeast_2 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.yeast.2_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.yg.s98 Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: caec3e8f29918f078b2dc7c76f4a74e2 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name YG_S98 Description: Platform Design Info for The Manufacturer's Name YG_S98 biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.yg.s98_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.zebgene.1.0.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 54fcf757b8069e95dd7e2f3ff74ae050 NeedsCompilation: no Title: Platform Design Info for Affymetrix ZebGene-1_0-st Description: Platform Design Info for Affymetrix ZebGene-1_0-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.zebgene.1.0.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.zebgene.1.1.st Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: d87028cd9024bc33be518635cf2f48fc NeedsCompilation: no Title: Platform Design Info for Affymetrix ZebGene-1_1-st Description: Platform Design Info for Affymetrix ZebGene-1_1-st biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.zebgene.1.1.st_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pd.zebrafish Version: 3.12.0 Depends: R (>= 3.2.0), Biostrings (>= 2.35.12), methods, RSQLite (>= 1.0.0), oligoClasses (>= 1.29.6), oligo (>= 1.31.5), DBI (>= 0.3.1), IRanges (>= 2.1.43), S4Vectors (>= 0.5.22) License: Artistic-2.0 MD5sum: 101f09a9d9304d1d8fbcc7f4812897b1 NeedsCompilation: no Title: Platform Design Info for The Manufacturer's Name Zebrafish Description: Platform Design Info for The Manufacturer's Name Zebrafish biocViews: AnnotationData, oligo Author: Benilton Carvalho Maintainer: Benilton Carvalho source.ver: src/contrib/pd.zebrafish_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 65 Package: pedbarrayv10.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 25acc3bfee229015ecca1c7d688e5168 NeedsCompilation: no Title: FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10) Description: FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10) assembled using data from public repositories biocViews: ChipDb, AnnotationData, FHCRC Nelson LabChip, Homo_sapiens, pedbarrayv10 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: FHCRC Nelson Lab source.ver: src/contrib/pedbarrayv10.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: pedbarrayv9.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: da4b2f9c0a672e0c9ee53f017bacaff7 NeedsCompilation: no Title: FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9) Description: FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9) assembled using data from public repositories biocViews: ChipDb, AnnotationData, FHCRC Nelson LabChip, Homo_sapiens, pedbarrayv9 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: FHCRC Nelson Lab source.ver: src/contrib/pedbarrayv9.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: PFAM.db Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) Suggests: DBI License: Artistic-2.0 MD5sum: b5fd5c9c43685f2b45a3102b98673d36 NeedsCompilation: no Title: A set of protein ID mappings for PFAM Description: A set of protein ID mappings for PFAM assembled using data from public repositories biocViews: AnnotationData Author: Marc Carlson, Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/PFAM.db_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: safe dependencyCount: 46 Package: phastCons100way.UCSC.hg19 Version: 3.7.2 Depends: R (>= 3.0.0), GenomicScores (>= 1.3.19) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome License: Artistic-2.0 MD5sum: 65aa706a567f7e328dbba0095f995cf1 NeedsCompilation: no Title: UCSC phastCons conservation scores for hg19 Description: Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/phastCons100way.UCSC.hg19_3.7.2.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: RareVariantVis suggestsMe: ATACseqQC, VariantFiltering dependencyCount: 102 Package: phastCons100way.UCSC.hg38 Version: 3.7.1 Depends: R (>= 3.0.0), GenomicScores (>= 1.3.19) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome License: Artistic-2.0 MD5sum: 878c757f9270b3410d11e4e4a4213c8e NeedsCompilation: no Title: UCSC phastCons conservation scores for hg38 Description: Store UCSC phastCons conservation scores for the human genome (hg38) calculated from multiple alignments with other 99 vertebrate species. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/phastCons100way.UCSC.hg38_3.7.1.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: primirTSS suggestsMe: GenomicScores dependencyCount: 102 Package: phastCons30way.UCSC.hg38 Version: 3.13.0 Depends: GenomicScores, AnnotationHub Suggests: knitr, rmarkdown License: Artistic-2.0 MD5sum: 754faee8463bc494c502540cb8f6ea8d NeedsCompilation: no Title: phastCons30way.UCSC.hg38 AnnotationHub Resource Metadata Description: Store phastCons30way.UCSC.hg38 AnnotationHub Resource Metadata. biocViews: AnnotationHub, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo organism: Homo sapiens VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/phastCons30way.UCSC.hg38 git_branch: master git_last_commit: c114273 git_last_commit_date: 2020-12-22 Date/Publication: 2021-10-13 source.ver: src/contrib/phastCons30way.UCSC.hg38_3.13.0.tar.gz vignettes: vignettes/phastCons30way.UCSC.hg38/inst/doc/phastCons30way.UCSC.hg38.html vignetteTitles: phastCons30way.UCSC.hg38 AnnotationHub Resource Metadata hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/phastCons30way.UCSC.hg38/inst/doc/phastCons30way.UCSC.hg38.R dependencyCount: 82 Package: phastCons35way.UCSC.mm39 Version: 3.16.0 Depends: GenomicScores, AnnotationHub Suggests: knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: 83fc2a2265bc341b6a00064a1286b5bc NeedsCompilation: no Title: UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata Description: Store UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata. Provide provenance and citation information for UCSC phastCons mm39 conservation score AnnotationHub resources. Illustrate in a vignette how to access those resources. biocViews: AnnotationData, PackageType, AnnotationHub, Organism, Mus_musculus Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo organism: Mus musculus VignetteBuilder: knitr source.ver: src/contrib/phastCons35way.UCSC.mm39_3.16.0.tar.gz vignettes: vignettes/phastCons35way.UCSC.mm39/inst/doc/phastCons35way.UCSC.mm39.html vignetteTitles: phastCons35way.UCSC.mm39 AnnotationHub Resource Metadata hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/phastCons35way.UCSC.mm39/inst/doc/phastCons35way.UCSC.mm39.R dependencyCount: 82 Package: phastCons7way.UCSC.hg38 Version: 3.7.1 Depends: R (>= 3.0.0), GenomicScores (>= 1.3.19) Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome License: Artistic-2.0 MD5sum: c2d87446b022c166c1c325ea2aef521d NeedsCompilation: no Title: UCSC phastCons conservation scores for hg38 Description: Store UCSC phastCons conservation scores for the human genome (hg38) calculated from multiple alignments with other 6 vertebrate species. biocViews: AnnotationData, Genetics, GenomicScores, Homo_sapiens Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo source.ver: src/contrib/phastCons7way.UCSC.hg38_3.7.1.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 102 Package: phyloP35way.UCSC.mm39 Version: 3.16.0 Depends: GenomicScores, AnnotationHub Suggests: knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: 2c34eef5f20eace04efd47673cdf1062 NeedsCompilation: no Title: UCSC phyloP mm39 conservation scores AnnotationHub Resource Metadata Description: Store UCSC phyloP mm39 conservation scores AnnotationHub Resource Metadata. Provide provenance and citation information for UCSC phyloP mm39 conservation score AnnotationHub resources. Illustrate in a vignette how to access those resources. biocViews: AnnotationData, PackageType, AnnotationHub, Organism, Mus_musculus Author: Robert Castelo [aut, cre] Maintainer: Robert Castelo organism: Mus musculus VignetteBuilder: knitr source.ver: src/contrib/phyloP35way.UCSC.mm39_3.16.0.tar.gz vignettes: vignettes/phyloP35way.UCSC.mm39/inst/doc/phyloP35way.UCSC.mm39.html vignetteTitles: phyloP35way.UCSC.mm39 AnnotationHub Resource Metadata hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/phyloP35way.UCSC.mm39/inst/doc/phyloP35way.UCSC.mm39.R dependencyCount: 82 Package: pig.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: a3941b9af7837e468df8f53546072c5f NeedsCompilation: no Title: Base Level Annotation databases for pig Description: Base annotation databases for pig, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Sus_scrofa Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Sus scrofa source.ver: src/contrib/pig.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: plasmodiumanophelescdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 54c5c326977d6358c40cacf34cb2aca2 NeedsCompilation: no Title: plasmodiumanophelescdf Description: A package containing an environment representing the Plasmodium_Anopheles.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, plasmodiumanopheles, Plasmodium_falciparum, Anopheles_gambiae Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/plasmodiumanophelescdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: altcdfenvs dependencyCount: 46 Package: plasmodiumanophelesprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 281683dab923168c2eedb7b08c528935 NeedsCompilation: no Title: Probe sequence data for microarrays of type plasmodiumanopheles Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Plasmodium\_Anopheles\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, plasmodiumanopheles, Plasmodium_falciparum, Anopheles_gambiae Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/plasmodiumanophelesprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: POCRCannotation.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: da1d4dacc5fffb9c5dfea55649974aa5 NeedsCompilation: no Title: A package containing metadata for POCRC arrays Description: A package containing metadata for POCRC arrays assembled using data from public repositories biocViews: ChipDb, AnnotationData, CUSTOMChip, Homo_sapiens, POCRCannotation Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: CUSTOM source.ver: src/contrib/POCRCannotation.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: PolyPhen.Hsapiens.dbSNP131 Version: 1.0.2 Depends: VariantAnnotation, RSQLite (>= 0.11.0) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 763e9cd4afd97b36f7e659f5454ef61f NeedsCompilation: no Title: PolyPhen Predictions for Homo sapiens dbSNP build 131 Description: Database of PolyPhen predictions for Homo sapiens dbSNP build 131 biocViews: AnnotationData, Genetics, Homo_sapiens Author: Valerie Obenchain Maintainer: Valerie Obenchain organism: Homo sapiens source.ver: src/contrib/PolyPhen.Hsapiens.dbSNP131_1.0.2.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: variants importsMe: appreci8R suggestsMe: VariantAnnotation, VariantFiltering dependencyCount: 80 Package: poplarcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 556e7f8f6f76436552d8044ef29279cb NeedsCompilation: no Title: poplarcdf Description: A package containing an environment representing the Poplar.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, poplar, Populus_sp Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/poplarcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: poplarprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 87a608cd86084a06973a88e9b51f799a NeedsCompilation: no Title: Probe sequence data for microarrays of type poplar Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Poplar\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, poplar, Populus_sp Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/poplarprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: porcine.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Ss.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 4a86b3e696d267dca673b4e9276d6368 NeedsCompilation: no Title: Affymetrix Affymetrix Porcine Array annotation data (chip porcine) Description: Affymetrix Affymetrix Porcine Array annotation data (chip porcine) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Sus_scrofa, porcine Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Sus scrofa manufacturer: Affymetrix source.ver: src/contrib/porcine.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: porcinecdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 32a60b93829c06a935895fab0a469228 NeedsCompilation: no Title: porcinecdf Description: A package containing an environment representing the Porcine.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, porcine, Sus_scrofa Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/porcinecdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: porcineprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 5ac483b6329a012d4c9954e3dee8869e NeedsCompilation: no Title: Probe sequence data for microarrays of type porcine Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Porcine\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, porcine, Sus_scrofa Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/porcineprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: primeviewcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 71e39a59a5907e9b8a8dba58d36eee50 NeedsCompilation: no Title: primeviewcdf Description: A package containing an environment representing the PrimeView.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, primeview, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/primeviewcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: primeviewprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 87cc56a8da4fb742ab1558ce1d3d26cc NeedsCompilation: no Title: Probe sequence data for microarrays of type primeview Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was PrimeView\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, primeview, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/primeviewprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: r10kcod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Rn.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: 4a7a25fee64294cfb5adccaa6cf28772 NeedsCompilation: no Title: Codelink UniSet Rat I Bioarray (~10 000 rat gene targets) annotation data (chip r10kcod) Description: Codelink UniSet Rat I Bioarray (~10 000 rat gene targets) annotation data (chip r10kcod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Rattus_norvegicus, r10kcod Author: Diego Diez Maintainer: Diego Diez organism: Rattus norvegicus manufacturer: Codelink source.ver: src/contrib/r10kcod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rae230a.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a2a80af1669fc038a64effbf5a4b246d NeedsCompilation: no Title: Affymetrix Affymetrix RAE230A Array annotation data (chip rae230a) Description: Affymetrix Affymetrix RAE230A Array annotation data (chip rae230a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rae230a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rae230a.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: annotate dependencyCount: 47 Package: rae230acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 6f2281124e1be164d5fd599e84f6adbc NeedsCompilation: no Title: rae230acdf Description: A package containing an environment representing the RAE230A.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, rae230a, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rae230acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rae230aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 6f2d77e1d9c1e3afb96ef78b3202bb0b NeedsCompilation: no Title: Probe sequence data for microarrays of type rae230a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RAE230A\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rae230a, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rae230aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: annotate dependencyCount: 46 Package: rae230b.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 4f0474ed22bf5ebd932dd6a4d9573551 NeedsCompilation: no Title: Affymetrix Affymetrix RAE230B Array annotation data (chip rae230b) Description: Affymetrix Affymetrix RAE230B Array annotation data (chip rae230b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rae230b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rae230b.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rae230bcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: bd61c17402e9c04be1000c16e0356618 NeedsCompilation: no Title: rae230bcdf Description: A package containing an environment representing the RAE230B.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, rae230b, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rae230bcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rae230bprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 7bdb3a07e1f00de8ff510a69bdac4c53 NeedsCompilation: no Title: Probe sequence data for microarrays of type rae230b Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RAE230B\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rae230b, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rae230bprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: raex10stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: a386809ea8da340f315e378fa329b3ac NeedsCompilation: no Title: Affymetrix raex10 annotation data (chip raex10stprobeset) Description: Affymetrix raex10 annotation data (chip raex10stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, raex10stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/raex10stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: raex10sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 3a0c511a1073c67172770bc3e4b842b5 NeedsCompilation: no Title: Affymetrix raex10 annotation data (chip raex10sttranscriptcluster) Description: Affymetrix raex10 annotation data (chip raex10sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, raex10sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/raex10sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: RaExExonProbesetLocation Version: 1.15.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.7.17) License: LGPL MD5sum: d547bcd30685495283b32f0f86ecc79b NeedsCompilation: no Title: Probe sequence data for microarrays of type RaEx Description: This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. biocViews: AnnotationData, AffymetrixChip, probe, RaEx, Rattus norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Raffaele A. Calogero source.ver: src/contrib/RaExExonProbesetLocation_1.15.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ragene10stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 358685c380b37027a064924069b9ee40 NeedsCompilation: no Title: Affymetrix ragene10 annotation data (chip ragene10stprobeset) Description: Affymetrix ragene10 annotation data (chip ragene10stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, ragene10stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/ragene10stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ragene10sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 5ff95454493a72bfa2546d82d32fbec1 NeedsCompilation: no Title: Affymetrix ragene10 annotation data (chip ragene10sttranscriptcluster) Description: Affymetrix ragene10 annotation data (chip ragene10sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, ragene10sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/ragene10sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ragene10stv1cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: df696e9dbf5b3f2761b6a0a5914be058 NeedsCompilation: no Title: ragene10stv1cdf Description: A package containing an environment representing the RaGene-1_0-st-v1.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, ragene10stv1, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ragene10stv1cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ragene10stv1probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 94978b6efb075aacf31ccdc8000e40fa NeedsCompilation: no Title: Probe sequence data for microarrays of type ragene10stv1 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RaGene-1\_0-st-v1\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, ragene10stv1, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ragene10stv1probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ragene11stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 86f7704c4852c514b3bc3221f7692ba3 NeedsCompilation: no Title: Affymetrix ragene11 annotation data (chip ragene11stprobeset) Description: Affymetrix ragene11 annotation data (chip ragene11stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, ragene11stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/ragene11stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ragene11sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: f7fbe318547f911b520415a90b3440e9 NeedsCompilation: no Title: Affymetrix ragene11 annotation data (chip ragene11sttranscriptcluster) Description: Affymetrix ragene11 annotation data (chip ragene11sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, ragene11sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/ragene11sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ragene20stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 23a43899a22078f4c13b7b1d45176319 NeedsCompilation: no Title: Affymetrix ragene20 annotation data (chip ragene20stprobeset) Description: Affymetrix ragene20 annotation data (chip ragene20stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, ragene20stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/ragene20stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ragene20sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b44c5f6ac2b2e3eb4d820d08f7a38644 NeedsCompilation: no Title: Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster) Description: Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, ragene20sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/ragene20sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ragene21stprobeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 6451885f99ce3873d5d4dbacdf968181 NeedsCompilation: no Title: Affymetrix ragene21 annotation data (chip ragene21stprobeset) Description: Affymetrix ragene21 annotation data (chip ragene21stprobeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, ragene21stprobeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/ragene21stprobeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ragene21sttranscriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 6ffe13e1594add0a5169b2083b608336 NeedsCompilation: no Title: Affymetrix ragene21 annotation data (chip ragene21sttranscriptcluster) Description: Affymetrix ragene21 annotation data (chip ragene21sttranscriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, ragene21sttranscriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/ragene21sttranscriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rat.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: b183489f8247adea901952a51faea48e NeedsCompilation: no Title: Base Level Annotation databases for rat Description: Base annotation databases for rat, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Rattus_norvegicus Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/rat.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rat2302.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: b1404d8a16fec681f0fd682589a685ea NeedsCompilation: no Title: Affymetrix Affymetrix Rat230_2 Array annotation data (chip rat2302) Description: Affymetrix Affymetrix Rat230_2 Array annotation data (chip rat2302) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rat2302 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rat2302.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rat2302cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: a033730f79a11d45b4cd7e7c520f8052 NeedsCompilation: no Title: rat2302cdf Description: A package containing an environment representing the Rat230_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, rat2302, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rat2302cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rat2302frmavecs Version: 0.99.11 Depends: R (>= 3.6.0) Imports: affy, frma Suggests: BiocStyle, knitr, rmarkdown License: GPL (>= 2) MD5sum: 44d9f00c2f3806899c6605d1ba274066 NeedsCompilation: no Title: Vectors used by frma for microarrays of type rat2302rnentrezg Description: This package was created with the help of frmaTools version 1.24.0. biocViews: AnnotationData, AffymetrixChip, rat2302, Rattus_norvegicus, FRMA, PackageType, probe Author: Vincenzo Belcastro , Sylvain Gubian Maintainer: Sylvain Gubian VignetteBuilder: knitr source.ver: src/contrib/rat2302frmavecs_0.99.11.tar.gz vignettes: vignettes/rat2302frmavecs/inst/doc/rat2302frmavecs-vignette.html vignetteTitles: Vector used by frma for microarrays of type rat2302 hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/rat2302frmavecs/inst/doc/rat2302frmavecs-vignette.R dependencyCount: 68 Package: rat2302probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: d1d9215e52b9e845cc4d7c902536e0d6 NeedsCompilation: no Title: Probe sequence data for microarrays of type rat2302 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rat230\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rat2302, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rat2302probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ratCHRLOC Version: 2.1.6 Depends: R(>= 2.7.0) License: The Artistic License, Version 2.0 MD5sum: 6fecff4821a5a47e3bd38a2ff78173d5 NeedsCompilation: no Title: A data package containing annotation data for ratCHRLOC Description: Annotation data file for ratCHRLOC assembled using data from public data repositories biocViews: FunctionalAnnotation, Rattus_norvegicus Author: Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald Maintainer: Biocore Data Team organism: Rattus norvegicus source.ver: src/contrib/ratCHRLOC_2.1.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: rattoxfxcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 912d0fa424615fcd92773ed174d5efdd NeedsCompilation: no Title: rattoxfxcdf Description: A package containing an environment representing the RatToxFX.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, rattoxfx, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rattoxfxcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rattoxfxprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 202791c72e8c956b9854fa4d9ba67a24 NeedsCompilation: no Title: Probe sequence data for microarrays of type rattoxfx Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RatToxFX\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rattoxfx, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rattoxfxprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: Rattus.norvegicus Version: 1.3.1 Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi (>= 1.11.39), GenomicFeatures, GO.db, org.Rn.eg.db, TxDb.Rnorvegicus.UCSC.rn5.refGene Imports: GenomicFeatures, AnnotationDbi License: Artistic-2.0 MD5sum: 5692fdeb0bc7f94e1db35f097cad99a9 NeedsCompilation: no Title: Annotation package for the Rattus.norvegicus object Description: Contains the Rattus.norvegicus object to access data from several related annotation packages. biocViews: AnnotationData, Genetics, OrganismDb, Rattus_norvegicus Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/Rattus.norvegicus_1.3.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: OrganismDbi dependencyCount: 109 Package: reactome.db Version: 1.89.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.33.0) Imports: methods, AnnotationDbi Suggests: RSQLite License: CC BY 4.0 MD5sum: 9cb7d59e83b3dfbe265d3264d880d5f2 NeedsCompilation: no Title: A set of annotation maps for reactome Description: A set of annotation maps for reactome assembled using data from reactome. This package has been created by a third-party developer, and is not affiliated with the Reactome team. biocViews: AnnotationData, FunctionalAnnotation Author: Willem Ligtenberg Maintainer: Willem Ligtenberg BugReports: https://gitlab.com/42analytics1/public/reactome.db-r-package/-/issues source.ver: src/contrib/reactome.db_1.89.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: attract, bioCancer, famat, methylGSA, ReactomePA, scTensor, signatureSearch, SMITE suggestsMe: AnnotationDbi, BioCor, ChIPpeakAnno, FGNet, fgsea, gatom, MLP, PCAN, PhosR, rGREAT, safe, sparrow, BaseSet, rliger dependencyCount: 46 Package: rGenomeTracksData Version: 0.99.0 Depends: R (>= 4.1), AnnotationHub Suggests: knitr, rmarkdown, BiocManager, devtools License: GPL (>= 3) MD5sum: 713103a8b4b4e48fa762ef589a43ffb8 NeedsCompilation: no Title: Demonstration Data from rGenomeTracks Package Description: rGenomeTracksData is a collection of data from pyGenomeTracks project. The purpose of this data is testing and demonstration of rGenomeTracks. This package include 14 sample file from different genomic and epigenomic file format. biocViews: AnnotationData, AnnotationHub, FunctionalAnnotation, Drosophila_melanogaster Author: Omar Elashkar [aut, cre] () Maintainer: Omar Elashkar VignetteBuilder: knitr source.ver: src/contrib/rGenomeTracksData_0.99.0.tar.gz vignettes: vignettes/rGenomeTracksData/inst/doc/rGenomeTracks.html vignetteTitles: rGenomeTracksData hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/rGenomeTracksData/inst/doc/rGenomeTracks.R importsMe: rGenomeTracks dependencyCount: 66 Package: rgu34a.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: e99dc4c05360b49a2249cb5de0b1dd4e NeedsCompilation: no Title: Affymetrix Affymetrix RG_U34A Array annotation data (chip rgu34a) Description: Affymetrix Affymetrix RG_U34A Array annotation data (chip rgu34a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rgu34a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rgu34a.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rgu34acdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: dcfa7ecce00e529f93809759ed837b8d NeedsCompilation: no Title: rgu34acdf Description: A package containing an environment representing the RG_U34A.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, rgu34a, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rgu34acdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rgu34aprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 902aee259a2894fa8713c4bf9266c0e2 NeedsCompilation: no Title: Probe sequence data for microarrays of type rgu34a Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34A\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rgu34a, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rgu34aprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rgu34b.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 5aeb80d5190bf2dcffa6b9264d3db33f NeedsCompilation: no Title: Affymetrix Affymetrix RG_U34B Array annotation data (chip rgu34b) Description: Affymetrix Affymetrix RG_U34B Array annotation data (chip rgu34b) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rgu34b Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rgu34b.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rgu34bcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 428b3a39f0d8addd7d863539b8cda6ea NeedsCompilation: no Title: rgu34bcdf Description: A package containing an environment representing the RG_U34B.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, rgu34b, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rgu34bcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rgu34bprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 2d6488309c5e54231a18e2ecf5608bb1 NeedsCompilation: no Title: Probe sequence data for microarrays of type rgu34b Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34B\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rgu34b, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rgu34bprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rgu34c.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: e19f250869a9894bc9d069a4baf39a3c NeedsCompilation: no Title: Affymetrix Affymetrix RG_U34C Array annotation data (chip rgu34c) Description: Affymetrix Affymetrix RG_U34C Array annotation data (chip rgu34c) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rgu34c Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rgu34c.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rgu34ccdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 556a7130086004d26095594da31c6410 NeedsCompilation: no Title: rgu34ccdf Description: A package containing an environment representing the RG_U34C.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, rgu34c, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rgu34ccdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rgu34cprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: d1a6c433acd30b95fa7be89147105b74 NeedsCompilation: no Title: Probe sequence data for microarrays of type rgu34c Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34C\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rgu34c, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rgu34cprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rguatlas4k.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 6a360676e08319ec5465c47c758110bd NeedsCompilation: no Title: Clontech BD Atlas Long Oligos Rat 4K annotation data (chip rguatlas4k) Description: Clontech BD Atlas Long Oligos Rat 4K annotation data (chip rguatlas4k) assembled using data from public repositories biocViews: ChipDb, AnnotationData, ClontechChip, Rattus_norvegicus, rguatlas4k Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Clontech source.ver: src/contrib/rguatlas4k.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rgug4105a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 3ccf354083ae36a7ae687fb8209c4e5b NeedsCompilation: no Title: Agilent annotation data (chip rgug4105a) Description: Agilent annotation data (chip rgug4105a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Rattus_norvegicus, rgug4105a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Agilent source.ver: src/contrib/rgug4105a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rgug4130a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 13643ac109aaf12590a5b6e379609b79 NeedsCompilation: no Title: Agilent Rat annotation data (chip rgug4130a) Description: Agilent Rat annotation data (chip rgug4130a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Rattus_norvegicus, rgug4130a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Agilent source.ver: src/contrib/rgug4130a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rgug4131a.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 1168d4906fb8ce60cbc0fa6cfa3b8ec6 NeedsCompilation: no Title: Agilent "Rat Genome, Whole" annotation data (chip rgug4131a) Description: Agilent "Rat Genome, Whole" annotation data (chip rgug4131a) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Rattus_norvegicus, rgug4131a Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Agilent source.ver: src/contrib/rgug4131a.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rhesus.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 40063317ca33adad8023d1fe7c014970 NeedsCompilation: no Title: Base Level Annotation databases for rhesus Description: Base annotation databases for rhesus, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Macaca_Mulatta Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Macaca Mulatta source.ver: src/contrib/rhesus.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rhesuscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 994e16da5dd31bc2796d0da40aa2634f NeedsCompilation: no Title: rhesuscdf Description: A package containing an environment representing the Rhesus.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, rhesus, Macaca_mulatta Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rhesuscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rhesusprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 4169c1c997c4c08b027bc7489533e11e NeedsCompilation: no Title: Probe sequence data for microarrays of type rhesus Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rhesus\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rhesus, Macaca_mulatta Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rhesusprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ri16cod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Rn.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: cd01b429295fdbba21dbe566effacbdd NeedsCompilation: no Title: Codelink Rat Inflammation 16 Bioarray annotation data (chip ri16cod) Description: Codelink Rat Inflammation 16 Bioarray annotation data (chip ri16cod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Rattus_norvegicus, ri16cod Author: Diego Diez Maintainer: Diego Diez organism: Rattus norvegicus manufacturer: Codelink source.ver: src/contrib/ri16cod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ricecdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 51db6f51f4adcfb7f4940d07668db8b8 NeedsCompilation: no Title: ricecdf Description: A package containing an environment representing the Rice.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, rice, Oryza_sp Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ricecdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: riceprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 2fac7746c343546cf30e6d54bc1e2019 NeedsCompilation: no Title: Probe sequence data for microarrays of type rice Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rice\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rice, Oryza_sp Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/riceprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: RmiR.Hs.miRNA Version: 1.0.7 Depends: R (>= 2.7.0) Imports: AnnotationDbi Suggests: methods, hgug4112a.db License: The Artistic License, Version 2.0 MD5sum: 4aedac188382447d9907d2617aa2e8e6 NeedsCompilation: no Title: Various databases of microRNA Targets Description: Various databases of microRNA Targets biocViews: AnnotationData,Homo_sapiens,CustomDBSchema,miRNA Author: Francesco Favero Maintainer: Francesco Favero source.ver: src/contrib/RmiR.Hs.miRNA_1.0.7.tar.gz vignettes: vignettes/RmiR.Hs.miRNA/inst/doc/RmiR.Hs.miRNA.pdf, vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig1a.pdf, vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig1b.pdf, vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig2a.pdf, vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig2b.pdf vignetteTitles: RmiR.Hs.miRNA Vignette, RmiRdb-fig1a.pdf, RmiRdb-fig1b.pdf, RmiRdb-fig2a.pdf, RmiRdb-fig2b.pdf hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/RmiR.Hs.miRNA/inst/doc/RmiR.Hs.miRNA.R dependencyCount: 46 Package: RmiR.hsa Version: 1.0.5 Depends: R (>= 2.7.0) Imports: AnnotationDbi Suggests: methods, hgug4112a.db License: The Artistic License, Version 2.0 MD5sum: f22a18d1a34d12f8fc4ba3daaf1379fd NeedsCompilation: no Title: Various databases of microRNA Targets Description: Various databases of microRNA Targets biocViews: AnnotationData, CustomDBSchema, miRNA, Homo_sapiens Author: Francesco Favero Maintainer: Francesco Favero source.ver: src/contrib/RmiR.hsa_1.0.5.tar.gz vignettes: vignettes/RmiR.hsa/inst/doc/RmiR.hsa.pdf, vignettes/RmiR.hsa/inst/doc/RmiRdb-fig1a.pdf, vignettes/RmiR.hsa/inst/doc/RmiRdb-fig1b.pdf, vignettes/RmiR.hsa/inst/doc/RmiRdb-fig2a.pdf, vignettes/RmiR.hsa/inst/doc/RmiRdb-fig2b.pdf vignetteTitles: RmiR.hsa Vignette, RmiRdb-fig1a.pdf, RmiRdb-fig1b.pdf, RmiRdb-fig2a.pdf, RmiRdb-fig2b.pdf hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/RmiR.hsa/inst/doc/RmiR.hsa.R dependencyCount: 46 Package: RnAgilentDesign028282.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Rn.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 72cafb0f7514a81f462acb3248e21aa9 NeedsCompilation: no Title: Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282) Description: Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AgilentChip, Rattus_norvegicus, RnAgilentDesign028282 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Agilent source.ver: src/contrib/RnAgilentDesign028282.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rnu34.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 7345817f2f26270779d2409b8a17a5bd NeedsCompilation: no Title: Affymetrix Affymetrix RN_U34 Array annotation data (chip rnu34) Description: Affymetrix Affymetrix RN_U34 Array annotation data (chip rnu34) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rnu34 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rnu34.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rnu34cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 0f2564fc6ac89de4d779faf253f23ce3 NeedsCompilation: no Title: rnu34cdf Description: A package containing an environment representing the RN_U34.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, rnu34, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rnu34cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rnu34probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: c5ef9793a437f2bf990f6e84d31da0de NeedsCompilation: no Title: Probe sequence data for microarrays of type rnu34 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RN-U34\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rnu34, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rnu34probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: Roberts2005Annotation.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: fb28aaf1a1e0c81cf936badc674b754a NeedsCompilation: no Title: Roberts2005Annotation Annotation Data (Roberts2005Annotation) Description: Roberts2005Annotation Annotation Data (Roberts2005Annotation) assembled using data from public repositories biocViews: ChipDb, AnnotationData, Roberts2005AnnotationChip, Homo_sapiens, Roberts2005Annotation Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Roberts2005Annotation source.ver: src/contrib/Roberts2005Annotation.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rta10probeset.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: ce002623471eef89fb841f0bf3e7c9f8 NeedsCompilation: no Title: Affymetrix rta10 annotation data (chip rta10probeset) Description: Affymetrix rta10 annotation data (chip rta10probeset) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rta10probeset Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rta10probeset.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rta10transcriptcluster.db Version: 8.8.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 14ade3f4fca2d1091ccb28e7a777f3e5 NeedsCompilation: no Title: Affymetrix rta10 annotation data (chip rta10transcriptcluster) Description: Affymetrix rta10 annotation data (chip rta10transcriptcluster) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rta10transcriptcluster Author: James W. MacDonald Maintainer: Biocore Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rta10transcriptcluster.db_8.8.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rtu34.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Rn.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: f46c4763627f1a9e00cdc9d0af8c5f2e NeedsCompilation: no Title: Affymetrix Affymetrix RT_U34 Array annotation data (chip rtu34) Description: Affymetrix Affymetrix RT_U34 Array annotation data (chip rtu34) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Rattus_norvegicus, rtu34 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus manufacturer: Affymetrix source.ver: src/contrib/rtu34.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: rtu34cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 317abfcca319d01eb14f16efa6d91da1 NeedsCompilation: no Title: rtu34cdf Description: A package containing an environment representing the RT_U34.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, rtu34, Rattus_norvegicus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rtu34cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rtu34probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 1778d857a61bf181b80b9fcf46ebd2c3 NeedsCompilation: no Title: Probe sequence data for microarrays of type rtu34 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RT-U34\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, rtu34, Rattus_norvegicus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/rtu34probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: rwgcod.db Version: 3.4.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.31.18), org.Rn.eg.db (>= 3.2.1) Imports: methods, AnnotationDbi Suggests: annotate, RUnit License: Artistic-2.0 MD5sum: c8d2fa81b6f03c4ee629a0883431e5fd NeedsCompilation: no Title: Codelink Rat Whole Genome Bioarray (~34 000 rat gene targets) annotation data (chip rwgcod) Description: Codelink Rat Whole Genome Bioarray (~34 000 rat gene targets) annotation data (chip rwgcod) assembled using data from public repositories biocViews: ChipDb, AnnotationData, CodelinkChip, Rattus_norvegicus, rwgcod Author: Diego Diez Maintainer: Diego Diez organism: Rattus norvegicus manufacturer: Codelink source.ver: src/contrib/rwgcod.db_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: saureuscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: d01883e4c3dd99f32012e6dbab8cdb8b NeedsCompilation: no Title: saureuscdf Description: A package containing an environment representing the S_aureus.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, saureus, Staphylococcus_aureus Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/saureuscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: saureusprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: eb4e91b10a536cbde4ecc08951ddf4d3 NeedsCompilation: no Title: Probe sequence data for microarrays of type saureus Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was S\_aureus\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, saureus, Staphylococcus_aureus Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/saureusprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: scAnnotatR.models Version: 0.99.10 Depends: R (>= 4.1) Suggests: scAnnotatR, knitr License: MIT + file LICENSE MD5sum: 77c6e16382645164d6413356c5ab52c5 NeedsCompilation: no Title: Pretrained models for scAnnotatR package Description: Pretrained models for scAnnotatR package. These models can be used to automatically classify several (immune) cell types in human scRNA-seq data. biocViews: AnnotationData, AnnotationHub, FunctionalAnnotation, Homo_sapiens Author: Vy Nguyen [aut] (), Johannes Griss [cre] () Maintainer: Johannes Griss VignetteBuilder: knitr source.ver: src/contrib/scAnnotatR.models_0.99.10.tar.gz vignettes: vignettes/scAnnotatR.models/inst/doc/introduction.html vignetteTitles: 1. Introduction to scAnnotatR hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/scAnnotatR.models/inst/doc/introduction.R dependencyCount: 0 Package: SHDZ.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 63c4439a272a5cd0c4746e9e53a7bdc7 NeedsCompilation: no Title: SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ) Description: SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ) assembled using data from public repositories biocViews: ChipDb, AnnotationData, Stanford Microarray DatabaseChip, Homo_sapiens, SHDZ Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Stanford Microarray Database source.ver: src/contrib/SHDZ.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: SIFT.Hsapiens.dbSNP132 Version: 1.0.2 Depends: VariantAnnotation, RSQLite (>= 0.11.0) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: c374f0bf4c99357cfe99e0b192c00d75 NeedsCompilation: no Title: SIFT Predictions for Homo sapiens dbSNP build 132 Description: Database of SIFT predictions for Homo sapiens dbSNP build 132 biocViews: AnnotationData, Genetics, Homo_sapiens Author: Valerie Obenchain Maintainer: Valerie Obenchain organism: Homo sapiens source.ver: src/contrib/SIFT.Hsapiens.dbSNP132_1.0.2.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: VariantAnnotation dependencyCount: 80 Package: SIFT.Hsapiens.dbSNP137 Version: 1.0.0 Depends: VariantAnnotation (>= 1.9.15), RSQLite (>= 0.11.0) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 3c3e73f826399af5ff368d1aab12cfd1 NeedsCompilation: no Title: PROVEAN/SIFT Predictions for Homo sapiens dbSNP build 137 Description: Database of PROVEAN/SIFT predictions for Homo sapiens dbSNP build 137 biocViews: AnnotationData, Genetics, Homo_sapiens Author: Valerie Obenchain Maintainer: Valerie Obenchain organism: Homo sapiens source.ver: src/contrib/SIFT.Hsapiens.dbSNP137_1.0.0.tar.gz hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: appreci8R suggestsMe: VariantAnnotation, VariantFiltering dependencyCount: 80 Package: SNPlocs.Hsapiens.dbSNP144.GRCh37 Version: 0.99.20 Depends: BSgenome (>= 1.43.4) Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19 License: Artistic-2.0 MD5sum: bd338bb583cacc18f210e871dac79ebf NeedsCompilation: no Title: SNP locations for Homo sapiens (dbSNP Build 144) Description: SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13. WARNING: Note that the GRCh37.p13 genome is a patched version of GRCh37. However the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct position but this injection will exclude chrM (i.e. nothing will be injected in that sequence). biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens Author: Hervé Pagès Maintainer: H. Pagès organism: Homo sapiens source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.20.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: appreci8R suggestsMe: AllelicImbalance, GenomicScores, MungeSumstats, VariantAnnotation, VariantFiltering, MafDb.1Kgenomes.phase1.hs37d5, MafDb.1Kgenomes.phase3.hs37d5, MafDb.ExAC.r1.0.hs37d5, MafDb.ExAC.r1.0.nonTCGA.hs37d5, MafDb.gnomAD.r2.1.hs37d5, MafDb.gnomADex.r2.1.hs37d5, MafDb.TOPMed.freeze5.hg19, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 dependencyCount: 60 Package: SNPlocs.Hsapiens.dbSNP144.GRCh38 Version: 0.99.20 Depends: BSgenome (>= 1.43.4) Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38 License: Artistic-2.0 MD5sum: 128c95e327adf72ae137fb5ae58270fc NeedsCompilation: no Title: SNP locations for Homo sapiens (dbSNP Build 144) Description: SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38. biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens Author: Hervé Pagès Maintainer: H. Pagès organism: Homo sapiens source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.20.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: BSgenome, GenomicFeatures, MungeSumstats, raer, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 dependencyCount: 60 Package: SNPlocs.Hsapiens.dbSNP149.GRCh38 Version: 0.99.20 Depends: BSgenome (>= 1.43.4) Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38 License: Artistic-2.0 MD5sum: 8cf749a8649a53449066b54160a3745c NeedsCompilation: no Title: SNP locations for Homo sapiens (dbSNP Build 149) Description: SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38. biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens Author: Hervé Pagès Maintainer: H. Pagès organism: Homo sapiens source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.20.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: MafDb.1Kgenomes.phase1.GRCh38, MafDb.1Kgenomes.phase3.GRCh38, MafDb.ExAC.r1.0.GRCh38, MafDb.ExAC.r1.0.nonTCGA.GRCh38, MafDb.gnomAD.r2.1.GRCh38, MafDb.gnomADex.r2.1.GRCh38, MafDb.TOPMed.freeze5.hg38, MafH5.gnomAD.v4.0.GRCh38 dependencyCount: 60 Package: SNPlocs.Hsapiens.dbSNP150.GRCh38 Version: 0.99.20 Depends: BSgenome (>= 1.43.4) Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38 License: Artistic-2.0 MD5sum: 575a7aaa9125d52ca0634b3ac586c9a7 NeedsCompilation: no Title: SNP locations for Homo sapiens (dbSNP Build 150) Description: SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 150. The source data files used for this package were created by NCBI between March 12-14, 2017, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38. biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens Author: Hervé Pagès Maintainer: H. Pagès organism: Homo sapiens source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP150.GRCh38_0.99.20.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 60 Package: SNPlocs.Hsapiens.dbSNP155.GRCh37 Version: 0.99.24 Depends: R (>= 4.2.0), BSgenome (>= 1.67.2) Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19 License: Artistic-2.0 MD5sum: 9473e23ffc7ae76e630a78324b245da8 NeedsCompilation: no Title: Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh37/hg19 assembly Description: The 929,496,192 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.UCSC.hg19. biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens Author: Hervé Pagès Maintainer: Hervé Pagès organism: Homo sapiens source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP155.GRCh37_0.99.24.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: motifbreakR, MungeSumstats dependencyCount: 60 Package: SNPlocs.Hsapiens.dbSNP155.GRCh38 Version: 0.99.24 Depends: R (>= 4.2.0), BSgenome (>= 1.67.2) Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38 License: Artistic-2.0 MD5sum: a16b7b1f940c3fcc8fd2d78f438fd25c NeedsCompilation: no Title: Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh38/hg38 assembly Description: The 949,021,448 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38. biocViews: AnnotationData, Genetics, SNPlocs, Homo_sapiens Author: Hervé Pagès Maintainer: Hervé Pagès organism: Homo sapiens source.ver: src/contrib/SNPlocs.Hsapiens.dbSNP155.GRCh38_0.99.24.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: MungeSumstats dependencyCount: 60 Package: SomaScan.db Version: 0.99.10 Depends: R (>= 4.3.0), AnnotationDbi (>= 1.56.2), methods Imports: DBI, org.Hs.eg.db (>= 3.14.0) Suggests: annotate, BiocStyle, dplyr, GO.db, KEGGREST, knitr, rmarkdown, SomaDataIO, testthat (>= 3.0.0), tibble, withr License: MIT + file LICENSE MD5sum: 4a5ba80cc1038c6adeb887147e691ca8 NeedsCompilation: no Title: Somalogic SomaScan Annotation Data Description: An R package providing extended biological annotations for the SomaScan Assay, a proteomics platform developed by SomaLogic Operating Co., Inc. The annotations in this package were assembled using data from public repositories. For more information about the SomaScan assay and its data, please reference the 'SomaLogic/SomaLogic-Data' GitHub repository. biocViews: ChipDb, AnnotationData, Homo_sapiens Author: Amanda Hiser [cre, aut] (), SomaLogic Operating Co., Inc. [cph, fnd] Maintainer: Amanda Hiser URL: https://somalogic.com, https://github.com/SomaLogic/SomaScan.db/ VignetteBuilder: knitr BugReports: https://github.com/SomaLogic/SomaScan.db/issues git_url: https://git.bioconductor.org/packages/SomaScan.db git_branch: devel git_last_commit: 30f4821 git_last_commit_date: 2024-04-19 Date/Publication: 2024-04-24 source.ver: src/contrib/SomaScan.db_0.99.10.tar.gz vignettes: vignettes/SomaScan.db/inst/doc/advanced_usage_examples.html, vignettes/SomaScan.db/inst/doc/example_adat_workflow.html, vignettes/SomaScan.db/inst/doc/SomaScan-db.html vignetteTitles: Advanced Exploration of the SomaScan Menu, Example ADAT Workflow Using SomaScan.db, Introduction to SomaScan.db hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/SomaScan.db/inst/doc/advanced_usage_examples.R, vignettes/SomaScan.db/inst/doc/example_adat_workflow.R, vignettes/SomaScan.db/inst/doc/SomaScan-db.R dependencyCount: 47 Package: soybeancdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: a18e0ba5dbcf2291bdec91091dc528e6 NeedsCompilation: no Title: soybeancdf Description: A package containing an environment representing the Soybean.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, soybean, Phytophthora_sojae, Heterodera_glycines Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/soybeancdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: soybeanprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 3057a5c387ff35b6c647c4db27041a13 NeedsCompilation: no Title: Probe sequence data for microarrays of type soybean Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Soybean\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, soybean, Phytophthora_sojae, Heterodera_glycines Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/soybeanprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: sugarcanecdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: f66d51868068f83d3693d3cb05be418a NeedsCompilation: no Title: sugarcanecdf Description: A package containing an environment representing the Sugar_Cane.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, sugarcane, Saccharum_officinarum Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/sugarcanecdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: sugarcaneprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 66c101ac73e9235d258b9f996c42778e NeedsCompilation: no Title: Probe sequence data for microarrays of type sugarcane Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Sugar\_Cane\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, sugarcane, Saccharum_officinarum Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/sugarcaneprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: synaptome.data Version: 0.99.6 Depends: R (>= 3.5.0), AnnotationHub Suggests: BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo License: Artistic-2.0 MD5sum: 4388c63219782a9aa3e384fcdb51ed47 NeedsCompilation: no Title: AnnotationData for Synaptome.DB package Description: The package provides access to the copy of the Synaptic proteome database. It was designed as an accompaniment for Synaptome.DB package. Database provides information for specific synaptic genes and allows building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions. In the current update we added 6 more synaptic proteome studies, which resulted in total of 64 studies. We introduced Synaptic Vesicle as a separate compartment. We also added coding mutations for Autistic Spectral disorder and Epilepsy collected from publicly available databases. biocViews: CustomDBSchema, AnnotationHub, FunctionalAnnotation, AnnotationData Author: Anatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut] Maintainer: Oksana Sorokina VignetteBuilder: knitr BugReports: https://github.com/lptolik/synaptome.db/issues/ git_url: https://git.bioconductor.org/packages/synaptome.data git_branch: master git_last_commit: 0a8f3a9 git_last_commit_date: 2022-10-18 Date/Publication: 2022-10-19 source.ver: src/contrib/synaptome.data_0.99.6.tar.gz vignettes: vignettes/synaptome.data/inst/doc/data_vignette.html vignetteTitles: data_vignette hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/synaptome.data/inst/doc/data_vignette.R dependsOnMe: synaptome.db dependencyCount: 66 Package: synaptome.db Version: 0.99.16 Depends: R (>= 3.5.0), synaptome.data Imports: DBI, RSQLite, dplyr, dbplyr, igraph, Rdpack, AnnotationHub, utils Suggests: rmarkdown, knitr, pander, testthat, devtools, markdown, ggplot2 License: Artistic-2.0 MD5sum: f59812004d1b9b433203dab3b41d10f7 NeedsCompilation: no Title: Synamptosome Proteome Database Description: The package contains local copy of the Synaptic proteome database. On top of this it provide a set of utility R functions to query and analyse its content. It allows extraction of information for specific genes and building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions. biocViews: CustomDBSchema, AnnotationHub, FunctionalAnnotation, AnnotationData Author: Anatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut] Maintainer: Oksana Sorokina VignetteBuilder: knitr BugReports: https://github.com/lptolik/synaptome.db/issues/ git_url: https://git.bioconductor.org/packages/synaptome.db git_branch: devel git_last_commit: 4f403fd git_last_commit_date: 2023-12-06 Date/Publication: 2024-02-28 source.ver: src/contrib/synaptome.db_0.99.16.tar.gz vignettes: vignettes/synaptome.db/inst/doc/synaptome_db_query.html vignetteTitles: synaptome_db_query hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/synaptome.db/inst/doc/synaptome_db_query.R dependencyCount: 73 Package: targetscan.Hs.eg.db Version: 0.6.1 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.18.3) Imports: methods, AnnotationDbi License: file LICENSE License_restricts_use: no MD5sum: d10569315400f6c1b95ad2688632b6de NeedsCompilation: no Title: TargetScan miRNA target predictions for human Description: TargetScan miRNA target predictions for human assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites. biocViews: AnnotationData, FunctionalAnnotation Author: Gabor Csardi Maintainer: James F. Reid source.ver: src/contrib/targetscan.Hs.eg.db_0.6.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: TRUE suggestsMe: BioCor, isomiRs dependencyCount: 46 Package: targetscan.Mm.eg.db Version: 0.6.1 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.18.3) Imports: methods, AnnotationDbi License: file LICENSE License_restricts_use: no MD5sum: 1830815c9d1383739f1ff152da0508c5 NeedsCompilation: no Title: TargetScan miRNA target predictions for mouse Description: TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites. biocViews: AnnotationData, FunctionalAnnotation Author: Gabor Csardi Maintainer: James F. Reid source.ver: src/contrib/targetscan.Mm.eg.db_0.6.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: TRUE dependencyCount: 46 Package: TENET.AnnotationHub Version: 0.99.4 Depends: R (>= 4.4) Imports: AnnotationHub, GenomicRanges Suggests: AnnotationHubData, testthat (>= 3.0.0), BiocManager, knitr, rmarkdown, BiocStyle License: GPL-2 MD5sum: 68af721312c2d5599a3dc48646bbdf6f NeedsCompilation: no Title: Annotation data for the TENET package Description: AnnotationHub package containing datasets for use in the TENET package. Includes GenomicRanges objects representing putative enhancer, promoter, and open chromatin regions. All included datasets are aligned to the hg38 human genome. biocViews: AnnotationHub, AnnotationData, GenomicSequence, Homo_sapiens Author: Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] (), Zexun Wu [aut] (), Ethan Nelson-Moore [aut] (), Suhn Rhie [aut] () Maintainer: Rhie Lab at the University of Southern California URL: https://github.com/rhielab/TENET.AnnotationHub VignetteBuilder: knitr BugReports: https://github.com/rhielab/TENET.AnnotationHub/issues git_url: https://git.bioconductor.org/packages/TENET.AnnotationHub git_branch: devel git_last_commit: b71884d git_last_commit_date: 2024-10-15 Date/Publication: 2024-10-16 source.ver: src/contrib/TENET.AnnotationHub_0.99.4.tar.gz vignettes: vignettes/TENET.AnnotationHub/inst/doc/TENET.AnnotationHub_vignette.pdf vignetteTitles: Using the TENET.AnnotationHub datasets hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/TENET.AnnotationHub/inst/doc/TENET.AnnotationHub_vignette.R dependencyCount: 67 Package: test1cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 8c94708b49ccc7bbf127485155970b9b NeedsCompilation: no Title: test1cdf Description: A package containing an environment representing the Test1.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, test1, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/test1cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: test2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 0d1c20d6450dfc83d62214be9dc46b5f NeedsCompilation: no Title: test2cdf Description: A package containing an environment representing the Test2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, test2, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/test2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: test3cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 9904e7fa6599f68400a9b77d0caa159a NeedsCompilation: no Title: test3cdf Description: A package containing an environment representing the Test3.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, test3, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/test3cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: test3probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: ffcbfee4e5c486fd03b2b9b64820340c NeedsCompilation: no Title: Probe sequence data for microarrays of type test3 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Test3\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, test3, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/test3probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: tomatocdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 200efc0637788d4bd3263fc9183c1aa6 NeedsCompilation: no Title: tomatocdf Description: A package containing an environment representing the Tomato.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, tomato, Solanum_lycopersicum Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/tomatocdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: tomatoprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 72020469f35c19399fd0be9eaffd8e77 NeedsCompilation: no Title: Probe sequence data for microarrays of type tomato Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Tomato\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, tomato, Solanum_lycopersicum Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/tomatoprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: TxDb.Athaliana.BioMart.plantsmart22 Version: 3.0.1 Depends: GenomicFeatures (>= 1.17.17) Imports: GenomicFeatures, AnnotationDbi License: Artistic-2.0 MD5sum: 3bab54295e300fedba99eef521220e50 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from BioMart by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Arabidopsis_thaliana Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana source.ver: src/contrib/TxDb.Athaliana.BioMart.plantsmart22_3.0.1.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: annotation suggestsMe: GenomicRanges dependencyCount: 78 Package: TxDb.Athaliana.BioMart.plantsmart25 Version: 3.1.3 Depends: GenomicFeatures (>= 1.19.32) Imports: GenomicFeatures, AnnotationDbi License: Artistic-2.0 MD5sum: eb007c07317b9717c76949e5ed999978 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from BioMart by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Arabidopsis_thaliana Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana source.ver: src/contrib/TxDb.Athaliana.BioMart.plantsmart25_3.1.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Athaliana.BioMart.plantsmart28 Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 9ed52284f01e08fc382db179b544bb17 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from BioMart by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Arabidopsis_thaliana Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Arabidopsis thaliana source.ver: src/contrib/TxDb.Athaliana.BioMart.plantsmart28_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: FindIT2 dependencyCount: 78 Package: TxDb.Athaliana.BioMart.plantsmart51 Version: 0.99.0 Depends: GenomicFeatures (>= 1.45.0) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: c623af555537bfd9958f8f9573308103 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from BioMart by exposing these as TxDb objects. This package is for Arabidopsis thaliana (taxID: 3702). The BioMart plantsmart release number is 51. biocViews: AnnotationData, Organism, Arabidopsis_thaliana, TxDb Author: Axel Thieffry [cre, aut] () Maintainer: Axel Thieffry organism: Arabidopsis thaliana source.ver: src/contrib/TxDb.Athaliana.BioMart.plantsmart51_0.99.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Btaurus.UCSC.bosTau8.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 2112b91fbecabf9c89d1b0a48d88ce03 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Bos_taurus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/TxDb.Btaurus.UCSC.bosTau8.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Btaurus.UCSC.bosTau9.refGene Version: 3.10.0 Depends: GenomicFeatures (>= 1.37.6) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: fe443d123b0b788e1e450f4e60036788 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Bos_taurus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Bos taurus source.ver: src/contrib/TxDb.Btaurus.UCSC.bosTau9.refGene_3.10.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Celegans.UCSC.ce11.ensGene Version: 3.15.0 Depends: GenomicFeatures (>= 1.47.13) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 1b4d61d06ac8acb27e57d1fafc5b79ce NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Caenorhabditis_elegans Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/TxDb.Celegans.UCSC.ce11.ensGene_3.15.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GenomicFeatures dependencyCount: 78 Package: TxDb.Celegans.UCSC.ce11.refGene Version: 3.4.6 Depends: GenomicFeatures (>= 1.35.11) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 3765169432e745aff5e85afd239066ca NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Caenorhabditis_elegans Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/TxDb.Celegans.UCSC.ce11.refGene_3.4.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Celegans.UCSC.ce6.ensGene Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 215c2edd440a3df8229fe6a75b431aa8 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Caenorhabditis_elegans Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/TxDb.Celegans.UCSC.ce6.ensGene_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: ChIPQC suggestsMe: BSgenome.Celegans.UCSC.ce6 dependencyCount: 78 Package: TxDb.Cfamiliaris.UCSC.canFam3.refGene Version: 3.11.0 Depends: GenomicFeatures (>= 1.39.7) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: bf6af84c14a30ad5d01f3678246b1180 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Canis_familiaris Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Canis familiaris source.ver: src/contrib/TxDb.Cfamiliaris.UCSC.canFam3.refGene_3.11.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Cfamiliaris.UCSC.canFam4.refGene Version: 3.14.0 Depends: GenomicFeatures (>= 1.45.2) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 0b47072fa79cf8e99f8563002a0998cb NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Canis_familiaris Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Canis familiaris source.ver: src/contrib/TxDb.Cfamiliaris.UCSC.canFam4.refGene_3.14.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Cfamiliaris.UCSC.canFam5.refGene Version: 3.14.0 Depends: GenomicFeatures (>= 1.45.2) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: fc3d84569c092b74e5e0bccb785db8b6 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Canis_familiaris Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Canis familiaris source.ver: src/contrib/TxDb.Cfamiliaris.UCSC.canFam5.refGene_3.14.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Cfamiliaris.UCSC.canFam6.refGene Version: 3.17.0 Depends: GenomicFeatures (>= 1.51.4) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 9279204329323191fbb72717a57b13aa NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Canis_familiaris Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Canis familiaris source.ver: src/contrib/TxDb.Cfamiliaris.UCSC.canFam6.refGene_3.17.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Dmelanogaster.UCSC.dm3.ensGene Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 46b7ffe0c516edf8a2a3b5d78e0d8b67 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Drosophila_melanogaster Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/TxDb.Dmelanogaster.UCSC.dm3.ensGene_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: ChIPQC, consensusDE suggestsMe: annotatr, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Rsamtools, BSgenome.Dmelanogaster.UCSC.dm3, chipenrich.data dependencyCount: 78 Package: TxDb.Dmelanogaster.UCSC.dm6.ensGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: bec18a1fb2768347e907e3171d5332ca NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Drosophila_melanogaster Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Drosophila melanogaster source.ver: src/contrib/TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: icetea suggestsMe: annotatr, atena, Damsel, GRaNIE, chipenrich.data dependencyCount: 78 Package: TxDb.Drerio.UCSC.danRer10.refGene Version: 3.4.6 Depends: GenomicFeatures (>= 1.35.11) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: fef9bbec3809e1b69991516988f146fb NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Danio_rerio Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/TxDb.Drerio.UCSC.danRer10.refGene_3.4.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: CNEr, chipenrich.data dependencyCount: 78 Package: TxDb.Drerio.UCSC.danRer11.refGene Version: 3.4.6 Depends: GenomicFeatures (>= 1.35.11) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 3d4ded4cec068a807b8b86b31389b677 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Danio_rerio Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/TxDb.Drerio.UCSC.danRer11.refGene_3.4.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Ggallus.UCSC.galGal4.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: d50eb467227cd9077a7a690ae6934d11 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Gallus_gallus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/TxDb.Ggallus.UCSC.galGal4.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Ggallus.UCSC.galGal5.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 0df53cd4f8e29705df75867a427de56e NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Gallus_gallus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/TxDb.Ggallus.UCSC.galGal5.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: annotatr dependencyCount: 78 Package: TxDb.Ggallus.UCSC.galGal6.refGene Version: 3.10.0 Depends: GenomicFeatures (>= 1.37.6) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 4d81026ecb786abf1fe0cb548238214c NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Gallus_gallus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Gallus gallus source.ver: src/contrib/TxDb.Ggallus.UCSC.galGal6.refGene_3.10.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Hsapiens.BioMart.igis Version: 2.3.2 Depends: GenomicFeatures (>= 1.17.22) Imports: GenomicFeatures, AnnotationDbi License: Artistic-2.0 MD5sum: 75b793928d29bcd3f069b5986bc2cfae NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from BioMart by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens Author: person Maintainer: Gabriel Becker organism: Homo sapiens source.ver: src/contrib/TxDb.Hsapiens.BioMart.igis_2.3.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Hsapiens.UCSC.hg18.knownGene Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: e8b32a672e87345c72bb30be73d1e2d6 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/TxDb.Hsapiens.UCSC.hg18.knownGene_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: FDb.InfiniumMethylation.hg18 importsMe: ChIPQC, epimutacions suggestsMe: ChIPpeakAnno, CINdex, methylPipe, Rsamtools, segmenter, TCGAutils, BSgenome.Hsapiens.UCSC.hg18 dependencyCount: 78 Package: TxDb.Hsapiens.UCSC.hg19.knownGene Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 61be88a81433958571b57d0952be48a0 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: FDb.InfiniumMethylation.hg19, Homo.sapiens, annotation, variants importsMe: appreci8R, ChIPQC, ChIPseeker, decompTumor2Sig, epimutacions, HiLDA, musicatk, nearBynding, OutSplice, RareVariantVis, RgnTX, rGREAT, UMI4Cats, uncoverappLib, cinaR, driveR, oncoPredict suggestsMe: AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocParallel, biomvRCNS, biovizBase, borealis, bumphunter, ChIPpeakAnno, chromPlot, CNVRanger, cpvSNP, CRISPRseek, dmrseq, EpiCompare, EpiMix, esATAC, FRASER, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicInteractionNodes, GenVisR, geomeTriD, ggbio, gmapR, GRaNIE, GUIDEseq, gwascat, HelloRanges, karyoploteR, MAST, MesKit, MutationalPatterns, NanoMethViz, OUTRIDER, pageRank, plotgardener, ProteoDisco, PureCN, R3CPET, ramr, regionalpcs, RiboProfiling, rtracklayer, SGSeq, SigFuge, spatzie, SplicingGraphs, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, TCGAutils, TFEA.ChIP, tidyCoverage, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering, VariantTools, chipenrich.data, Mega2R, MOCHA, SNPassoc dependencyCount: 78 Package: TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: a0d61cd90639c40b3d0bb6bdb043cf12 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GenomicFeatures dependencyCount: 78 Package: TxDb.Hsapiens.UCSC.hg38.knownGene Version: 3.20.0 Depends: GenomicFeatures Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 416c5b08453bcfa1687dc06c15af3fa7 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/TxDb.Hsapiens.UCSC.hg38.knownGene_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: annotation importsMe: DegCre, DNAfusion, epimutacions, gINTomics, musicatk, nearBynding, OutSplice, rGREAT, strandCheckR, uncoverappLib, cinaR, driveR suggestsMe: annotatr, bambu, BSgenome, BUSpaRse, ChIPpeakAnno, enhancerHomologSearch, EpiCompare, EpiTxDb, gDNAx, geneAttribution, GenomicDataCommons, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, GRaNIE, hicVennDiagram, ideal, mosdef, NanoMethViz, Organism.dplyr, podkat, raer, SARC, scmeth, spatzie, Ularcirc, wiggleplotr, chipenrich.data, xcoredata dependencyCount: 78 Package: TxDb.Hsapiens.UCSC.hg38.refGene Version: 3.19.0 Depends: GenomicFeatures Imports: AnnotationDbi License: Artistic-2.0 MD5sum: b5b5034f8674fafd9bd5a352264fc0a5 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Homo_sapiens Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Homo sapiens source.ver: src/contrib/TxDb.Hsapiens.UCSC.hg38.refGene_3.19.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: MOCHA dependencyCount: 78 Package: TxDb.Mmulatta.UCSC.rheMac10.refGene Version: 3.14.0 Depends: GenomicFeatures (>= 1.45.2) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 81b01b07d87ae91b4d9a269a2baf616e NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Macaca_mulatta Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/TxDb.Mmulatta.UCSC.rheMac10.refGene_3.14.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GRaNIE dependencyCount: 78 Package: TxDb.Mmulatta.UCSC.rheMac3.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: db84a9e85d613635d74002f11df41e1f NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Macaca_mulatta Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/TxDb.Mmulatta.UCSC.rheMac3.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Mmulatta.UCSC.rheMac8.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 8437e0a05ffd28b667c7b740e0db68a7 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Macaca_mulatta Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Macaca mulatta source.ver: src/contrib/TxDb.Mmulatta.UCSC.rheMac8.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Mmusculus.UCSC.mm10.ensGene Version: 3.4.0 Depends: GenomicFeatures (>= 1.25.17) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 88d65b714d1f86b456aee2b8524e9d84 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Mus_musculus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: annotation suggestsMe: Organism.dplyr dependencyCount: 78 Package: TxDb.Mmusculus.UCSC.mm10.knownGene Version: 3.10.0 Depends: GenomicFeatures (>= 1.37.4) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 129b610bf05ec77451731196baa55bcc NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Mus_musculus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/TxDb.Mmusculus.UCSC.mm10.knownGene_3.10.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: Mus.musculus, csawBook importsMe: ChIPQC, gINTomics, cinaR suggestsMe: annotatr, BSgenome, CRISPRseek, csaw, DegCre, enhancerHomologSearch, EpiCompare, epivizrData, GenomicFeatures, GenomicRanges, GRaNIE, karyoploteR, monaLisa, multicrispr, NanoMethViz, SARC, spatzie, chipenrich.data, chipseqDB dependencyCount: 78 Package: TxDb.Mmusculus.UCSC.mm39.knownGene Version: 3.20.0 Depends: GenomicFeatures Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 59d302d11980ad599da45918d2891242 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Mus_musculus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/TxDb.Mmusculus.UCSC.mm39.knownGene_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GRaNIE dependencyCount: 78 Package: TxDb.Mmusculus.UCSC.mm39.refGene Version: 3.19.0 Depends: GenomicFeatures Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 2c2c41adc8b05f6353ee7ae744cdbd98 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Mus_musculus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/TxDb.Mmusculus.UCSC.mm39.refGene_3.19.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: NanoMethViz dependencyCount: 78 Package: TxDb.Mmusculus.UCSC.mm9.knownGene Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: cb72af039b011033477363bda8ed9104 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Mus_musculus Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Mus musculus source.ver: src/contrib/TxDb.Mmusculus.UCSC.mm9.knownGene_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: ChIPQC, Cogito, INSPEcT, Rmmquant suggestsMe: annotatr, CAGEfightR, chipseq, compEpiTools, EpiCompare, ggbio, GRaNIE, spatzie, BSgenome.Mmusculus.UCSC.mm9, chipenrich.data, CAGEWorkflow dependencyCount: 78 Package: TxDb.Ptroglodytes.UCSC.panTro4.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 9bdd3ba81561550f50250368d7d52eaa NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Pan_troglodytes Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Ptroglodytes.UCSC.panTro5.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 76ee1d253d1c8e54c12e8d5b9db93303 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Pan_troglodytes Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Ptroglodytes.UCSC.panTro6.refGene Version: 3.10.0 Depends: GenomicFeatures (>= 1.37.6) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 48a88973fe0e5117cadd5c816a46e6e9 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Pan_troglodytes Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Pan troglodytes source.ver: src/contrib/TxDb.Ptroglodytes.UCSC.panTro6.refGene_3.10.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Rnorvegicus.BioMart.igis Version: 2.3.2 Depends: GenomicFeatures (>= 1.17.22) Imports: GenomicFeatures, AnnotationDbi License: Artistic-2.0 MD5sum: eaf695f63cd021074d68c76d148cdfb7 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from BioMart by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus Author: Gabriel Becker Maintainer: Gabriel Becker organism: Rattus norvegicus source.ver: src/contrib/TxDb.Rnorvegicus.BioMart.igis_2.3.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Rnorvegicus.UCSC.rn4.ensGene Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 6bf2ebc522c2828c036e52b2028792c1 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/TxDb.Rnorvegicus.UCSC.rn4.ensGene_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: ChIPQC suggestsMe: annotatr, BSgenome.Rnorvegicus.UCSC.rn4, chipenrich.data dependencyCount: 78 Package: TxDb.Rnorvegicus.UCSC.rn5.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 8a93a15b37bf73e5c529c976c4561537 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/TxDb.Rnorvegicus.UCSC.rn5.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: Rattus.norvegicus suggestsMe: annotatr, BSgenome.Rnorvegicus.UCSC.rn5, chipenrich.data dependencyCount: 78 Package: TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 6660ee000fbc956541728c6dadf1fca7 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Rnorvegicus.UCSC.rn6.refGene Version: 3.4.6 Depends: GenomicFeatures (>= 1.35.11) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: ea525daa75bcf165eb24f6e93f4dbf6c NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/TxDb.Rnorvegicus.UCSC.rn6.refGene_3.4.6.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: annotatr, GRaNIE, chipenrich.data dependencyCount: 78 Package: TxDb.Rnorvegicus.UCSC.rn7.refGene Version: 3.15.0 Depends: GenomicFeatures (>= 1.47.13) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 589dc0f8f4c6ee8f5ed11aeb95a74a7d NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Rattus_norvegicus Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Rattus norvegicus source.ver: src/contrib/TxDb.Rnorvegicus.UCSC.rn7.refGene_3.15.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: GRaNIE dependencyCount: 78 Package: TxDb.Scerevisiae.UCSC.sacCer2.sgdGene Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 8ce83ef2ba6cfc69f9b4435a0a047819 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Saccharomyces_cerevisiae Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae source.ver: src/contrib/TxDb.Scerevisiae.UCSC.sacCer2.sgdGene_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Scerevisiae.UCSC.sacCer3.sgdGene Version: 3.2.2 Depends: GenomicFeatures (>= 1.21.30) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: afb23b3265730b9e59c2f07ab37cc3a0 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Saccharomyces_cerevisiae Author: Marc Carlson, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae source.ver: src/contrib/TxDb.Scerevisiae.UCSC.sacCer3.sgdGene_3.2.2.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependsOnMe: generegulation suggestsMe: txcutr, VplotR dependencyCount: 78 Package: TxDb.Sscrofa.UCSC.susScr11.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: a6c5a2c402ad904a2f55099e391d18de NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Sus_scrofa Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Sus scrofa source.ver: src/contrib/TxDb.Sscrofa.UCSC.susScr11.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: TxDb.Sscrofa.UCSC.susScr3.refGene Version: 3.12.0 Depends: GenomicFeatures (>= 1.41.3) Imports: AnnotationDbi License: Artistic-2.0 MD5sum: 981602dc706e545d5acdf7590e222ca7 NeedsCompilation: no Title: Annotation package for TxDb object(s) Description: Exposes an annotation databases generated from UCSC by exposing these as TxDb objects biocViews: AnnotationData, Genetics, TxDb, Sus_scrofa Author: Bioconductor Core Team, Bioconductor Package Maintainer [cre] Maintainer: Bioconductor Package Maintainer organism: Sus scrofa source.ver: src/contrib/TxDb.Sscrofa.UCSC.susScr3.refGene_3.12.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 78 Package: u133aaofav2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 716483ddb6664b8b7f0c58cd21136e8b NeedsCompilation: no Title: u133aaofav2cdf Description: A package containing an environment representing the U133AAofAv2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, u133aaofav2, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/u133aaofav2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: u133x3p.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Hs.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 1a36a09dc64b94728bf6ac75600b40c6 NeedsCompilation: no Title: Affymetrix Human X3P Array annotation data (chip u133x3p) Description: Affymetrix Human X3P Array annotation data (chip u133x3p) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Homo_sapiens, u133x3p Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Homo sapiens manufacturer: Affymetrix source.ver: src/contrib/u133x3p.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: u133x3pcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: ee4e62041bc8c63813e8cf8400ece2f3 NeedsCompilation: no Title: u133x3pcdf Description: A package containing an environment representing the U133_X3P.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, u133x3p, Homo_sapiens Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/u133x3pcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: u133x3pprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 81e2b00985688160805147bef0c638be NeedsCompilation: no Title: Probe sequence data for microarrays of type u133x3p Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was U133\_X3P\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, u133x3p, Homo_sapiens Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/u133x3pprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: UCSCRepeatMasker Version: 3.15.2 Depends: AnnotationHub, GenomeInfoDb Imports: XML, RCurl Suggests: knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: ad19a6fbd936e478af88fa21bc918a29 NeedsCompilation: no Title: UCSC RepeatMasker AnnotationHub resource metadata Description: Store UCSC RepeatMasker AnnotationHub resource metadata. Provide provenance and citation information for UCSC RepeatMasker AnnotationHub resources. Illustrate in a vignette how to access those resources. biocViews: AnnotationHub, AnnotationData Author: Robert Castelo [aut, cre], Beatriz Calvo [ctb] Maintainer: Robert Castelo VignetteBuilder: knitr git_url: https://git.bioconductor.org/packages/UCSCRepeatMasker git_branch: master git_last_commit: e06066a git_last_commit_date: 2022-02-01 Date/Publication: 2022-02-09 source.ver: src/contrib/UCSCRepeatMasker_3.15.2.tar.gz vignettes: vignettes/UCSCRepeatMasker/inst/doc/UCSCRepeatMasker.html vignetteTitles: UCSC RepeatMasker AnnotationHub Resource Metadata hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: FALSE Rfiles: vignettes/UCSCRepeatMasker/inst/doc/UCSCRepeatMasker.R dependencyCount: 69 Package: UniProtKeywords Version: 0.99.7 Depends: R (>= 4.0.0) Imports: utils Suggests: knitr, rmarkdown, markdown, testthat License: MIT + file LICENSE MD5sum: b2cda32dda256fb0d110192e194af838 NeedsCompilation: no Title: Keywords from UniProt Database Description: UniProt database provides a list of controlled vocabulary represented as keywords for genes or proteins. This is useful for summarizing gene functions in a compact way. This package provides data of keywords hierarchy and gene-keyword relations. biocViews: AnnotationData, Organism, Homo_sapiens Author: Zuguang Gu [aut, cre] () Maintainer: Zuguang Gu URL: https://github.com/jokergoo/UniProtKeywords, https://www.uniprot.org/keywords/ VignetteBuilder: knitr BugReports: https://github.com/jokergoo/UniProtKeywords/issues git_url: https://git.bioconductor.org/packages/UniProtKeywords git_branch: devel git_last_commit: 342c7c1 git_last_commit_date: 2023-09-23 Date/Publication: 2023-09-27 source.ver: src/contrib/UniProtKeywords_0.99.7.tar.gz vignettes: vignettes/UniProtKeywords/inst/doc/UniProtKeywords.html vignetteTitles: Keywords from the UniProt database hasREADME: FALSE hasNEWS: TRUE hasINSTALL: FALSE hasLICENSE: TRUE Rfiles: vignettes/UniProtKeywords/inst/doc/UniProtKeywords.R suggestsMe: simona dependencyCount: 1 Package: vitisviniferacdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 8eb491f3ffa3ff0814f5c155787ae160 NeedsCompilation: no Title: vitisviniferacdf Description: A package containing an environment representing the Vitis_Vinifera.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, vitisvinifera, Vitis_vinifera Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/vitisviniferacdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: vitisviniferaprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 386c0d5e37896d073ac20970e88b3160 NeedsCompilation: no Title: Probe sequence data for microarrays of type vitisvinifera Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Vitis\_Vinifera\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, vitisvinifera, Vitis_vinifera Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/vitisviniferaprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: wheatcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 0abeeeb9700b8d93a1a83769bdd8480f NeedsCompilation: no Title: wheatcdf Description: A package containing an environment representing the wheat.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, wheat, Triticum_sp, Aegilops_tauschii Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/wheatcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: wheatprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: b602d5050239850515be9dce12286360 NeedsCompilation: no Title: Probe sequence data for microarrays of type wheat Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was wheat\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, wheat, Triticum_sp, Aegilops_tauschii Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/wheatprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: worm.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 4d526e85bb77f45595eaa31861a0ea3d NeedsCompilation: no Title: Base Level Annotation databases for worm Description: Base annotation databases for worm, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Caenorhabditis_elegans Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Caenorhabditis elegans source.ver: src/contrib/worm.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: xenopus.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: aeaf9b5fddc97f1c79ef98ff452b4858 NeedsCompilation: no Title: Base Level Annotation databases for xenopus Description: Base annotation databases for xenopus, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Xenopus_laevis Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Xenopus laevis source.ver: src/contrib/xenopus.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: xenopuslaeviscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 9d09ff76471ae60faf71090e0638f240 NeedsCompilation: no Title: xenopuslaeviscdf Description: A package containing an environment representing the Xenopus_laevis.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, xenopuslaevis, Xenopis_laevis Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/xenopuslaeviscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: xenopuslaevisprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 06a25268a5ab57bddf28bbb364ea977b NeedsCompilation: no Title: Probe sequence data for microarrays of type xenopuslaevis Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Xenopus\_laevis\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, xenopuslaevis, Xenopis_laevis Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/xenopuslaevisprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: xlaevis.db Version: 3.2.3 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3), org.Xl.eg.db (>= 3.3.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: deaffe47b4ee48a7edb159d8104dc241 NeedsCompilation: no Title: Affymetrix Xenopus laevis annotation data (chip xlaevis) Description: Affymetrix Xenopus laevis annotation data (chip xlaevis) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Xenopus_laevis, xlaevis Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Xenopus laevis manufacturer: Affymetrix source.ver: src/contrib/xlaevis.db_3.2.3.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: xlaevis2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 9e4a80d66397299b4e66a8d6715ca4aa NeedsCompilation: no Title: xlaevis2cdf Description: A package containing an environment representing the X_laevis_2.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, xlaevis2, Xenopis_tropicalis Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/xlaevis2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: xlaevis2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: d86f8a05e106eb3123435da233ff851d NeedsCompilation: no Title: Probe sequence data for microarrays of type xlaevis2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\_laevis\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, xlaevis2, Xenopis_laevis Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/xlaevis2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 Version: 0.99.12 Depends: R (>= 2.10), BSgenome Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37 License: Artistic-2.0 MD5sum: 758d024c50d2349036dc27cc689b4e5a NeedsCompilation: no Title: Extra SNP locations for Homo sapiens (dbSNP Build 144) Description: Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism). biocViews: AnnotationData, Genetics, XtraSNPlocs, Homo_sapiens Author: Herve Pages Maintainer: H. Pages organism: Homo sapiens source.ver: src/contrib/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE importsMe: appreci8R dependencyCount: 60 Package: XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 Version: 0.99.12 Depends: R (>= 2.10), BSgenome Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh38 License: Artistic-2.0 MD5sum: c617aa805c7ecf60ee9283eb3c51b1c7 NeedsCompilation: no Title: Extra SNP locations for Homo sapiens (dbSNP Build 144) Description: Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism). biocViews: AnnotationData, Genetics, XtraSNPlocs, Homo_sapiens Author: Herve Pages Maintainer: H. Pages organism: Homo sapiens source.ver: src/contrib/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.12.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: BSgenome dependencyCount: 60 Package: xtropicaliscdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 253e3cde76a393789e124f395820e947 NeedsCompilation: no Title: xtropicaliscdf Description: A package containing an environment representing the X_tropicalis.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, xtropicalis, Xenopis_laevis Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/xtropicaliscdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: xtropicalisprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 43d15a7e12edaec1bb5f24b87498b599 NeedsCompilation: no Title: Probe sequence data for microarrays of type xtropicalis Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\_tropicalis\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, xtropicalis, Xenopus_tropicalis Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/xtropicalisprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ye6100subacdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 27bd71410956bfe8bffc8de14b85bdb0 NeedsCompilation: no Title: ye6100subacdf Description: A package containing an environment representing the Ye6100subA.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, ye6100suba, Saccharomyces_cerevisiae Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ye6100subacdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ye6100subbcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: ee9ec4bd941940745bad538d79bfeab4 NeedsCompilation: no Title: ye6100subbcdf Description: A package containing an environment representing the Ye6100subB.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, ye6100subb, Saccharomyces_cerevisiae Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ye6100subbcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ye6100subccdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: fcdfed29a695fe53b62bacfe13dfe0c1 NeedsCompilation: no Title: ye6100subccdf Description: A package containing an environment representing the Ye6100subC.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, ye6100subc, Saccharomyces_cerevisiae Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ye6100subccdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ye6100subdcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 521b501ddbcdc680c3d27b5b201029b1 NeedsCompilation: no Title: ye6100subdcdf Description: A package containing an environment representing the Ye6100subD.CDF file. biocViews: AnnotationData, AffymetrixChip, cdf, ye6100subd, Saccharomyces_cerevisiae Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ye6100subdcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: yeast.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: 579b93c0d1d3aa777f771cb25478d55f NeedsCompilation: no Title: Base Level Annotation databases for yeast Description: Base annotation databases for yeast, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Saccharomyces_cerevisiae Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae source.ver: src/contrib/yeast.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: yeast2.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Sc.sgd.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: add5784349cde4d01b75ea4472d25597 NeedsCompilation: no Title: Affymetrix Affymetrix Yeast_2 Array annotation data (chip yeast2) Description: Affymetrix Affymetrix Yeast_2 Array annotation data (chip yeast2) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Saccharomyces_cerevisiae, yeast2 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae manufacturer: Affymetrix source.ver: src/contrib/yeast2.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE suggestsMe: piano dependencyCount: 47 Package: yeast2cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 0a718d78ae56bef9bad8168123038ac8 NeedsCompilation: no Title: yeast2cdf Description: A package containing an environment representing the Yeast_2.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, yeast2, Saccharomyces_cerevisiae Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/yeast2cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: yeast2probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: 3f52a2b7bd379624bc2966ca28c9ddf9 NeedsCompilation: no Title: Probe sequence data for microarrays of type yeast2 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Yeast\_2\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, yeast2, Saccharomyces_cerevisiae Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/yeast2probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ygs98.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Sc.sgd.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: d21c0dc1ee0f7512ae921a501b425fd3 NeedsCompilation: no Title: Affymetrix Affymetrix YG_S98 Array annotation data (chip ygs98) Description: Affymetrix Affymetrix YG_S98 Array annotation data (chip ygs98) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Saccharomyces_cerevisiae, ygs98 Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Saccharomyces cerevisiae manufacturer: Affymetrix source.ver: src/contrib/ygs98.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: ygs98cdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: ec7df7564cf28e093646325ec55baf1e NeedsCompilation: no Title: ygs98cdf Description: A package containing an environment representing the YG_S98.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, ygs98, Saccharomyces_cerevisiae Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ygs98cdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: ygs98frmavecs Version: 1.3.0 Depends: R (>= 2.10.0) License: GPL (>= 2) MD5sum: e78c8447eb381b91dafb2f9688da39dc NeedsCompilation: no Title: Vectors used by frma for microarrays of type ygs98 Description: This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0. biocViews: AnnotationData, AffymetrixChip, ygs98, Yeast, FRMA Author: Matthew N. McCall , Rafael A. Irizarry Maintainer: Matthew N. McCall source.ver: src/contrib/ygs98frmavecs_1.3.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 0 Package: ygs98probe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: f40f21d7074818a4ee74a45b5533e89d NeedsCompilation: no Title: Probe sequence data for microarrays of type ygs98 Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was YG-S98\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, ygs98, Saccharomyces_cerevisiae Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/ygs98probe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: zebrafish.db Version: 3.13.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.53.2), org.Dr.eg.db (>= 3.13.0) Imports: methods, AnnotationDbi Suggests: DBI, annotate, RUnit License: Artistic-2.0 MD5sum: 64e40a61e81ac9397affb09880846559 NeedsCompilation: no Title: Affymetrix Affymetrix Zebrafish Array annotation data (chip zebrafish) Description: Affymetrix Affymetrix Zebrafish Array annotation data (chip zebrafish) assembled using data from public repositories biocViews: ChipDb, AnnotationData, AffymetrixChip, Danio_rerio, zebrafish Author: Marc Carlson Maintainer: Bioconductor Package Maintainer organism: Danio rerio manufacturer: Affymetrix source.ver: src/contrib/zebrafish.db_3.13.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 47 Package: zebrafish.db0 Version: 3.20.0 Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.67.0) License: Artistic-2.0 MD5sum: a1d3664debe24db9c7c610717d2650b9 NeedsCompilation: no Title: Base Level Annotation databases for zebrafish Description: Base annotation databases for zebrafish, intended ONLY to be used by AnnotationDbi to produce regular annotation packages. biocViews: db0, AnnotationData, Danio_rerio Author: Bioconductor Core Team Maintainer: Bioconductor Package Maintainer organism: Danio rerio source.ver: src/contrib/zebrafish.db0_3.20.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: zebrafishcdf Version: 2.18.0 Depends: utils Imports: AnnotationDbi License: LGPL MD5sum: 04edbb632600c97610b86423c2d850e7 NeedsCompilation: no Title: zebrafishcdf Description: A package containing an environment representing the Zebrafish.cdf file. biocViews: AnnotationData, AffymetrixChip, cdf, zebrafish, Danio_rerio Author: The Bioconductor Project Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/zebrafishcdf_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46 Package: zebrafishprobe Version: 2.18.0 Depends: R (>= 1.6), AnnotationDbi (>= 1.11.21) License: LGPL MD5sum: eea2747859afa763addc7313ab0a2452 NeedsCompilation: no Title: Probe sequence data for microarrays of type zebrafish Description: This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Zebrafish\_probe\_tab. biocViews: AnnotationData, AffymetrixChip, probe, zebrafish, Danio_rerio Author: The Bioconductor Project www.bioconductor.org Maintainer: Bioconductor Package Maintainer source.ver: src/contrib/zebrafishprobe_2.18.0.tar.gz hasREADME: FALSE hasNEWS: FALSE hasINSTALL: FALSE hasLICENSE: FALSE dependencyCount: 46