DRTraceSet class manages dose-response information for a single cell line, multiple drugs

DRTraceSet constructor for multiple cell lines, single drug, single dataset

# S4 method for DRTraceSet,missing
plot(x, y, ...)

DRTraceSet(
  cell_lines = c("SK-ES-1", "TC-71", "MHH-ES-1", "HCC-56", "SK-HEP-1"),
  drug = "Irinotecan",
  dataset = "CCLE"
)

Arguments

x

for plot: instance of DRTraceSet

y

for plot: not used

...

not used

cell_lines

character vector of cell line names, must be found in `cell_lines_v1` data of pogos package

drug

character(1) drug name in `compounds_v1`

dataset

character(1) dataset known to pharmacodb.pmgenomics.ca

Value

instance of DRTraceSet

Note

Will query pharmacodb for relevant dose-response information

Examples

DRTraceSet()
#> DRTraceSet for 5 cell lines, drug Irinotecan, dataset CCLE