DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset

getDrugs extracts drug list

DRProfSet manages all data from a given cell line from a pharmacogenomics source

getDrugs(x)

DRProfSet(cell_line = "MCF7", dataset = "CCLE")

# S4 method for DRProfSet,missing
plot(x, y, ...)

Arguments

x

instance of DRProfSet

cell_line

character(1) cell line name, entries in cell_lines_v1

dataset

character(1) resource name, entries in datasets_v1

y

for plot: not used

...

not used

Value

getDrugs: character vector

instance of DRProfSet

Examples

if (interactive()) trs = DRTraceSet() else trs = iriCCLE()
ps = traces(trs)[[1]]
ps
#> DRProfSet with 1 dose-response profiles for cell line SK-ES-1
#>  dataset: CCLE
getDrugs(ps)
#> [1] "Irinotecan"
if (interactive()) DRProfSet()