chevreulProcess
This is the development version of chevreulProcess; to use it, please install the devel version of Bioconductor.
Tools for managing SingleCellExperiment objects as projects
Bioconductor version: Development (3.21)
Tools analyzing SingleCellExperiment objects as projects. for input into the Chevreul app downstream. Includes functions for analysis of single cell RNA sequencing data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
Author: Kevin Stachelek [aut, cre] (ORCID:
Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>
citation("chevreulProcess")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("chevreulProcess")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chevreulProcess")| Preprocessing | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization |
| Version | 0.99.27 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0), SingleCellExperiment, scater |
| Imports | batchelor, bluster, circlize, cluster, DBI, dplyr, EnsDb.Hsapiens.v86, ensembldb, fs, GenomicFeatures, glue, megadepth, methods, purrr, RSQLite, S4Vectors, scran, scuttle, stringr, tibble, tidyr, tidyselect, utils |
| System Requirements | |
| URL | https://github.com/whtns/chevreulProcess https://whtns.github.io/chevreulProcess/ |
| Bug Reports | https://github.com/cobriniklab/chevreulProcess/issues |
See More
| Suggests | BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chevreulProcess_0.99.27.tar.gz |
| Windows Binary (x86_64) | chevreulProcess_0.99.27.zip |
| macOS Binary (x86_64) | chevreulProcess_0.99.27.tgz |
| macOS Binary (arm64) | chevreulProcess_0.99.27.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chevreulProcess |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chevreulProcess |
| Bioc Package Browser | https://code.bioconductor.org/browse/chevreulProcess/ |
| Package Short Url | https://bioconductor.org/packages/chevreulProcess/ |
| Package Downloads Report | Download Stats |