ADT
AE
AIRR
AUCell
Andreatta
Atchley
Autoencoder
BCR
BCRs
BD
BLOSUM
BPPARAM
Barcode
BioC
BiocParallel
Biotechnologies
CAERGSGGSYIPTF
CARKVRDSSYKLIF
CAS
CASF
CASSDPSGRQGPRWDTQYF
CASSDSGYNEQFF
CASSVRRERANTGELFF
CDR
CMD
COVID
CTaa
CTgene
CTnt
CTstrict
CVVSDNTGGFKTIF
Carmona
ChangeLog
Chao
ClonalDiversity
CoNGA
Codecov
CombineBCR
CombineExpression
Commun
Contig
Contigs
Corvino
Drs
Evercode
FASGAI
FilteringMulti
Florian
Francesco
GEX
GIANA
GSE
GSEA
GSEABase
GSVA
GeneSetCollection
Gini
Github
Hyperexpanded
IGH
IGKJ
IGL
IMGT
Ig
ImMunoGeneTics
Immcantation
Inv
JC
JSON
Jaccard
KF
Keras
Kidera
Levenshtein
Liangtao
MSWHIM
Massimo
Mazziotta
McPAS
MiXCR
Morisita
Morisita's
Multiomic
NG
Nebulosa
Nicky
Nikolaj
Noonan
OHE
Omniscope
PIRD
PMID
PWM
Pagh
ParseBio
Pielou
Preprocessed
ProjectTIL
ProtFP
Readded
Rebasing
Rebumping
Repo
SCE
STARTRAC
Satija's
SeuratObject
SingleCellExperiment
Startrac
StartracDiversity
Steric
TCR
TCRA
TCRB
TCRMatch
TCRs
TRA
TRAV
TRB
TRBD
TRBV
TRD
TRG
TUST
TenX
Trex
UCell
UMAP
VAE
VDJ
VDJC
VDJdb
VHSE
Vgene
Vishwakarma
VizGene
Voigt
Vrij
WAT
WNN
Zhang
Zheng
aa
abundanceContig
addVariable
adjacencyMatrix
airr
al
allelic
alluvialClones
alluvialClonotype
alluvialClonotypes
assertthat
asy
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autoencoder
autoencoding
barcode
barcodes
bioconductor
bronchoalveolar
cdr
chao
checkBlanks
checkContigs
circlize
clonaRarefaction
clonalAbundance
clonalBias
clonalCluster
clonalCompare
clonalDiversity
clonalFrequency
clonalHomeostasis
clonalLength
clonalNetwork
clonalOccupy
clonalOverlap
clonalOverlay
clonalProportion
clonalQuant
clonalScatter
clonalSizeDistribution
clonalSplit
clonally
cloneCall
cloneSize
cloneSizes
cloneType
clonesizeDistribution
clonotype
clonotypeBias
clonotypeSizeDistribution
clonotypes
clusterTCR
colData
coldata
combineBCR
combineContig
combineExpression
combineSeurat
combineTCR
combineTRUST
combinedContig
comparators
compareClonotype
compareClonotypes
complementarity
constructConDFAndparseTCR
contig
contigs
convolutional
cpp
createHTOContigList
crucianiProperties
csv
customizable
de
densityEnrichment
dev
df
dir
doubletons
downsample
downsampling
dplyr
epitope
epitopes
erroring
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expa
explainability
exportClones
exportGraph
exportTable
filterMulti
filterNonproductive
filteringMulti
formatGenes
formated
frac
gd
generateSequences
geometricEncoder
getCirclize
getCoord
getIMGT
geyserEnrichment
ggalluvial
ggdendrogram
ggfittext
ggplot
gini
github
grDevices
grabMeta
grey
greyed
groupBy
hammingCompare
heatmapEnrichment
hexbin
highlightClones
highlightClonotypes
hypermutation
iNEXT
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igraph
imgt
immApex
incongruent
inferCDR
inframe
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inv
io
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jaccard
jk
json
kideraFactors
kmer
kmers
lapply
latform
lengthContigs
lengthDF
ln
loadContigs
lvCompare
lvcompare
mB
mRNA
maTrex
makeGenes
matric
migr
migra
morisita
multisystem
mutateSequences
nFeature
na
nalysis
novo
nrichment
nt
nucleotides
occupiedClonotype
occupiedRepertoire
occupiedscRepertoire
onehotEncoder
parseAIRR
parseBCR
parseTCR
pca
percentAA
percentGenes
percentKmer
percentVJ
performNormalization
positionalEntropy
positionalProperty
powerTCR
probabilityMatrix
propertyEncoder
pseudogenes
quantContig
rda
readRDS
reclustering
regressClonotype
relevel
removeMulti
removeNA
repo
ridgeEnrichment
runEscape
runIbex
runPCA
runTrex
sc
scRep
scater
scater's
scatterClonotype
scatterClonotypes
scatterEnrichment
scran
screp
sequenceDecoder
seurat
shannon
simpson
splitEnrichment
ssGSEA
stScales
startrac
startstop
str
stripBarcodes
subsetClones
subtype
subtypes
summarise
tScales
tensorflow
testthat
theCall
tokenizeSequences
tokenizing
trackable
tran
transcriptomic
trex
unreturned
variational
variationalSequences
viridis
visVgene
vizGene
vizGenes
vizVgene
zScales
