235f3f5f235d3d3d1a056d2d02054afe *CITATION
be5e58dde02261960129cf7d8a69edf8 *DESCRIPTION
54ca7a321643a916c919991786b5110f *INDEX
a67b2bae97e1d6d416f773cb3f897596 *LICENSE
f847f3fb03bc3f7f9e05f1e519aa9d08 *Meta/Rd.rds
41622305d1b139d0fa70aaba76dca134 *Meta/features.rds
5466ec6b86304a9759e55524b66171bc *Meta/hsearch.rds
b9b969eb7536ce0e4b0d1603a66318c6 *Meta/links.rds
fd1b32a7045d83afba96cd4156581add *Meta/nsInfo.rds
aa299b3b6a6ebd2c87f873709aebbf98 *Meta/package.rds
8e49138bfa067c156fefdf2c621d6b94 *Meta/vignette.rds
92a9c42e8c837bdcec7e5648d961afce *NAMESPACE
ab66dcace749116172cbd2ca24f0e47e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/lineagespot
df1b2971f2aacf5a86b1144c30d06890 *R/lineagespot.rdb
685e74c8875e913662ed388a53f9701c *R/lineagespot.rdx
41885ca251c45ce65cf076261623a416 *doc/index.html
e7b5ac00c863eccdb74ed71caf54fdef *doc/lineagespot.R
e8c040fb4a7658ecd5dab9d21dcf8ecc *doc/lineagespot.Rmd
b5f0e6006d14308fd380fa503de00171 *doc/lineagespot.html
f5e0a3774b7342f30933a6a6096b87d8 *extdata/NC_045512.2_annot.gff3
75d5f9e5aa25e8295175be3f01e5c801 *extdata/ref/AY.1.txt
a63320752bc2b7751296b4449f6e97c7 *extdata/ref/AY.2.txt
d4411d1c25b50414e66bc84fa561ad82 *extdata/ref/AY.3.1.txt
9cadcd3d11009852ef56b367f85192c2 *extdata/ref/AY.3.txt
6c30d353b0b6943653fcf8ddd4191f27 *extdata/ref/B.1.1.7+S_E484K.txt
9ea0bb2f409d7477cd4fce4f6961e883 *extdata/ref/B.1.1.7.txt
37988678fe4feeb5615208b395df7761 *extdata/ref/B.1.351.2.txt
bf8aba1c30257ea58a10556a1e990a98 *extdata/ref/B.1.351.3.txt
34a840993d5217bac537fe1d586887ad *extdata/ref/B.1.351.txt
8856c72b91d113b8ba7ae808637c44e3 *extdata/ref/B.1.617.2.txt
baba26946cb2b1592e81f3d031af4ab6 *extdata/ref/P.1.1.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.2.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.txt
55367e21ab319d455b1f86c15f770c6f *extdata/srep-article-code/README.md
7d232ebab2293db3c3157327af2c4bb1 *extdata/vcf-files/SampleA_freebayes_ann.vcf
e99b4f3fc50668b0f4f8ab04eb00d0e3 *extdata/vcf-files/SampleB_freebayes_ann.vcf
71c9b4573e3e3f830fd4f2ff2f0e2b46 *extdata/vcf-files/SampleC_freebayes_ann.vcf
71b6b3785f86d1adfe5dcbc69efc8bf3 *help/AnIndex
2c3ae8d3451d84253bc6aaf4b35315f3 *help/aliases.rds
4ce696eed2af8814805d038ef7a8ee27 *help/lineagespot.rdb
ff09300bdd5ea5496042057dd600cea3 *help/lineagespot.rdx
1da711ca13348e58ba016c3e5f962d3d *help/paths.rds
893c086289894b8f894564357fd70c81 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
9c4d7c29f3d4c520b036f6468d6f53d5 *scripts/README.md
c312f2fdbc6e364b727fbed8b26623fb *scripts/raw-data-analysis.md
