adjacencyMatrix         Adjacency matrix from amino acid or nucleotide
                        sequences
formatGenes             Ensure clean gene nomenclature using IMGT
                        annotations
generateSequences       Randomly Generate Amino Acid Sequences
geometricEncoder        Geometric Encoder from Amino Acid Strings
getIMGT                 Get IMGT Sequences for Specific Loci
getIR                   Extract Immune Receptor Sequences
immapex_AA.data         A list of amino acid properties
immapex_blosum.pam.matrices
                        List of amino acid substitution matrices
immapex_example.data    Example contig data for Apex
immapex_gene.list       A list of IMGT gene names by genes, loci, and
                        species
inferCDR                Infer portions of the CDR Loop from Vgene data
mutateSequences         Randomly Mutate Sequences of Amino Acids
onehotEncoder           One Hot Encoder from Amino Acid or Nucleotide
                        Strings
positionalEncoder       Adding Position-Specific Information to
                        Sequences
probabilityMatrix       Position Probability Matrix for Amino Acid or
                        Nucleotide Sequences
propertyEncoder         Encoder from Amino Acid String by Properties
sequenceDecoder         One Hot Decoder from One Hot Encoded Matrix or
                        3D Array
tokenizeSequences       Generate Tokenized Sequences from Amino Acid
                        String
variationalSequences    Generate Similar Sequences using Variational
                        Autoencoder
