# Generated by roxygen2: do not edit by hand

export(densityEnrichment)
export(escape.matrix)
export(getGeneSets)
export(geyserEnrichment)
export(heatmapEnrichment)
export(pcaEnrichment)
export(performNormalization)
export(performPCA)
export(ridgeEnrichment)
export(runEscape)
export(scatterEnrichment)
export(splitEnrichment)
import(ggplot2)
import(patchwork)
importFrom(AUCell,AUCell_buildRankings)
importFrom(AUCell,AUCell_calcAUC)
importFrom(BiocParallel,BatchtoolsParam)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SerialParam)
importFrom(GSEABase,GeneSet)
importFrom(GSEABase,GeneSetCollection)
importFrom(GSEABase,geneIds)
importFrom(GSVA,gsva)
importFrom(GSVA,gsvaParam)
importFrom(GSVA,ssgseaParam)
importFrom(Matrix,colSums)
importFrom(Matrix,t)
importFrom(MatrixGenerics,rowSds)
importFrom(MatrixGenerics,rowSums2)
importFrom(SeuratObject,Assays)
importFrom(SeuratObject,CreateAssay5Object)
importFrom(SeuratObject,CreateAssayObject)
importFrom(SeuratObject,CreateDimReducObject)
importFrom(SeuratObject,Idents)
importFrom(SingleCellExperiment,"altExp<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,altExps)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(UCell,ScoreSignatures_UCell)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,group_by)
importFrom(dplyr,slice_max)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_at)
importFrom(ggdist,stat_pointinterval)
importFrom(ggpointdensity,geom_pointdensity)
importFrom(ggridges,geom_density_ridges)
importFrom(ggridges,geom_density_ridges2)
importFrom(ggridges,geom_density_ridges_gradient)
importFrom(ggridges,position_points_jitter)
importFrom(grDevices,hcl.colors)
importFrom(methods,slot)
importFrom(msigdb,appendKEGG)
importFrom(msigdb,getMsigdb)
importFrom(reshape2,melt)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,prcomp)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_sort)
importFrom(utils,getFromNamespace)
