assign_cells_to_clones	assign_cells_to_clones
assign_scores	assign_scores
A_clone	A_clone
A_germline	A_germline
binaryPRC	binaryPRC
binaryROC	binaryROC
Clone ID	clone_id
clone_id	clone_id
clone_id_EM	clone_id
clone_id_Gibbs	clone_id
colMatch	colMatch
Config_all	Config_all
devianceIC	devianceIC
donor_read_simulator	donor_read_simulator
D_clone	D_clone
D_germline	D_germline
D_input	D_input
get_logLik	get_logLik
get_snp_matrices	get_snp_matrices
get_tree	get_tree
Geweke_Z	Geweke_Z
heatmap.theme	heatmap.theme
heat_matrix	heat_matrix
load_cellSNP_vcf	load_cellSNP_vcf
load_GT_vcf	load_GT_vcf
mixBinom	mixBinom
mtx_to_df	mtx_to_df
multiPRC	multiPRC
plot_config_diffs	plot_config_diffs
plot_tree	plot_tree
predMixBinom	predMixBinom
prob_heatmap	prob_heatmap
pub.theme	pub.theme
read_vcf	read_vcf
rowArgmax	rowArgmax
rowMax	rowMax
sample_seq_depth	sample_seq_depth
sample_tree_SNV	sample_tree_SNV
sim_read_count	sim_read_count
tree	tree
tree_3clone	tree_3clone
tree_4clone	tree_4clone
tree_5clone	tree_5clone
vc_heatmap	vc_heatmap
