Changes in version 1.0.1 ---------------------------------------------------------------- CODE * In setters and initialize functions, examples were updated to shorten elapsed times (only interactive). Thanks to V. Obenchain VIGNETTE * Elapsed times reduction using TarSeqQC data example instead of building myPanel from scratch. Thanks to V. Obenchain Changes in version 1.0.0 ---------------------------------------------------------------- DOCUMENTATION * First release Changes in version 0.99.9 ---------------------------------------------------------------- CODE * Modifications in pileupCounts in order to consider stranded counts * Changes in plot methods. arrangeGrob from gridExtra was changed by plot_grid form cowplot package. * Update the package vignette. Changes in version 0.99.8 ---------------------------------------------------------------- CODE * Modifications in pileupCounts and buildFeaturePanel in order to process overlapped features. * Wrap plotting examples. Changes in version 0.99.7 ---------------------------------------------------------------- CODE * Modifications in pileupCounts and buildFeaturePanel in order to process overlapped features. * Modifications in bedFile building in order to remove duplicated features based on duplicated start, end and chromosome definitions. Changes in version 0.99.6 ---------------------------------------------------------------- CODE * Definition of pileupCounts as a function instead a TargetExperiment S4 method. * Adaptation and optimization of pileupCounts and bplapply usage in the buildFeaturePanel method. Changes in version 0.99.4 ---------------------------------------------------------------- DESCRIPTION file * Modification of the Rsatmools version dependency. Changes in version 0.99.3 ---------------------------------------------------------------- CODE * Modifications in buildFeaturePanel and summarizePanel for a correct implementation of parallel computing. Changes in version 0.99.2 ---------------------------------------------------------------- CODE * BiocParallel was used instead of parallel package for parallel computing. Changes in version 0.99.1 ---------------------------------------------------------------- DOCUMENTATION * The example data has been compiled using Bioconductor 3.2 packages. Changes in version 0.99.0 ---------------------------------------------------------------- DOCUMENTATION * `NEWS` file was added.