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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Path2PPI")
In most cases, you don't need to download the package archive at all.
Path2PPI
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see Path2PPI.
Prediction of pathway-specific protein-protein interaction networks
Bioconductor version: 3.2
Package to predict pathway specific protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI uses PPIs of the pathway of interest from other well established model organisms to predict a certain pathway in the target organism. Path2PPI only depends on the sequence similarity of the involved proteins.
Author: Oliver Philipp [aut, cre], Ina Koch [ctb]
Maintainer: Oliver Philipp <o.philipp at bioinformatik.uni-frankfurt.de>
Citation (from within R,
enter citation("Path2PPI")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Path2PPI")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Path2PPI")
| HTML | The Path2PPI package | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Network, NetworkInference, Pathways, Proteomics, Software, SystemsBiology |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.2.1), igraph (>= 1.0.1), methods |
| Imports | |
| LinkingTo | |
| Suggests | knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bioinformatik.uni-frankfurt.de/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Path2PPI_1.0.0.tar.gz |
| Windows Binary | Path2PPI_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | Path2PPI_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | Path2PPI_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Path2PPI/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/Path2PPI/ |
| Package Downloads Report | Download Stats |
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