To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Oscope")
In most cases, you don't need to download the package archive at all.
Oscope
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see Oscope.
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Bioconductor version: 3.2
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
Author: Ning Leng
Maintainer: Ning Leng <lengning1 at gmail.com>
Citation (from within R,
enter citation("Oscope")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Oscope")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Oscope")
| Oscope_vigette | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, RNASeq, Sequencing, Software, StatisticalMethod |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
| License | Artistic-2.0 |
| Depends | EBSeq, cluster, testthat, BiocParallel |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Oscope_1.0.0.tar.gz |
| Windows Binary | Oscope_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | Oscope_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | Oscope_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Oscope/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/Oscope/ |
| Package Downloads Report | Download Stats |
Documentation »
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