To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

In most cases, you don't need to download the package archive at all.

AllelicImbalance

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see AllelicImbalance.

Investigates allele specific expression

Bioconductor version: 3.2

Provides a framework for allelic specific expression investigation using RNA-seq data.

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Citation (from within R, enter citation("AllelicImbalance")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AllelicImbalance")

PDF		AllelicImbalance-vignette.pdf
PDF		Reference Manual
Text		NEWS

biocViews	Genetics, Infrastructure, Sequencing, Software
Version	1.8.3
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	GPL-3
Depends	R (>= 3.2.0), grid, GenomicRanges, SummarizedExperiment(>= 0.2.0), GenomicAlignments
Imports	methods, BiocGenerics, AnnotationDbi, VariantAnnotation, Biostrings, S4Vectors, IRanges, Rsamtools, GenomicFeatures, Gviz, lattice, seqinr, GenomeInfoDb
LinkingTo
Suggests	testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20120608, BiocStyle, knitr
SystemRequirements
Enhances
URL	https://github.com/pappewaio/AllelicImbalance
BugReports	https://github.com/pappewaio/AllelicImbalance/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	AllelicImbalance_1.8.3.tar.gz
Windows Binary	AllelicImbalance_1.8.3.zip
Mac OS X 10.6 (Snow Leopard)	AllelicImbalance_1.8.0.tgz
Mac OS X 10.9 (Mavericks)	AllelicImbalance_1.8.3.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/AllelicImbalance/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/AllelicImbalance/
Package Downloads Report	Download Stats

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