Changes in version 1.1.2                        

  - April 20, 2023
  - fix warnings for limma

                        Changes in version 1.1.1                        

  - fix warnings

                        Changes in version 1.0.7                        

  - update docs

                        Changes in version 1.0.6                        

  - in zenith() set inter.gene.cor=0.01 to be default to be consistent
    with limma::camera

                        Changes in version 1.0.5                        

  - bug fix in zenith() when progressbar=FALSE

                        Changes in version 1.0.3                        

  - fix issue with corInGeneSet() when some residuals are NA

                        Changes in version 1.0.2                        

  - add zenithPR_gsa()

  - flag to disable correlation in zenith()

                        Changes in version 1.0.1                        

  - fixes to Bioconductor

  - improve documentation
  - get_GeneOntology() uses getGenesets(...,hierarchical=TRUE)

                        Changes in version 1.0.0                        

  - Improve documetation
  - fix bug with residuals

                       Changes in version 0.99.13                       

  - fix bug in degrees of freedom for zenith() null

                       Changes in version 0.99.12                       

  - update dependencies

                       Changes in version 0.99.10                       

  - replace recodeToList() since this functionality already exists

  - Upgrade t- MSigDB 7.2

  - Update documentation

                       Changes in version 0.99.9                        

  - Update to address issues from
    https://github.com/Bioconductor/Contributions/issues/2630#issuecomment-1171369001

  - zenith report error when squaredStats is TRUE

                       Changes in version 0.99.8                        

  - plotZenithResults() as default

  - Much faster loading of cached gene sets
  - enforce:
  - variancePartition (>= 1.19.16)
  - EnrichmentBrowser (>= 2.19.13)

                       Changes in version 0.99.7                        

  - update plotZenithResults_gg()

  - Enforce subsetting of residuals from MArrayLM

                       Changes in version 0.99.6                        

  - add plotZenithResults_gg()

  - zenith() now returns effect size and standard error
  - if squaredStats==TRUE, return PValue = p.greater

                       Changes in version 0.99.5                        

  - Fix small error caused by fit$method

                       Changes in version 0.99.4                        

  - zenith uses t statistical for fixed effect models and z.std for
    mixed effects

                       Changes in version 0.99.3                        

  - zenith now works when dream uses random effects
  - more accurate time in progress bar

                       Changes in version 0.99.2                        

  - fix documentation
  - add zenith_gsa()

                       Changes in version 0.99.0                        

  - submit to BioC