planet
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see planet.
Placental DNA methylation analysis tools
Bioconductor version: 3.17
This package contains R functions to infer additional biological variables to supplemental DNA methylation analysis of placental data. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data. The package comes with an example processed placental dataset.
Author: Victor Yuan [aut, cre], Wendy P. Robinson [ctb]
Maintainer: Victor Yuan <victor.2wy at gmail.com>
citation("planet")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("planet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("planet")| planet | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CpGIsland, DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-2 |
| Depends | R (>= 4.0) |
| Imports | methods, tibble, magrittr, dplyr |
| System Requirements | |
| URL | https://victor.rbind.io/planet http://github.com/wvictor14/planet |
| Bug Reports | http://github.com/wvictor14/planet/issues |
See More
| Suggests | ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | methylclock |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | planet_1.8.0.tar.gz |
| Windows Binary | planet_1.8.0.zip |
| macOS Binary (x86_64) | planet_1.8.0.tgz |
| macOS Binary (arm64) | planet_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/planet |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/planet |
| Bioc Package Browser | https://code.bioconductor.org/browse/planet/ |
| Package Short Url | https://bioconductor.org/packages/planet/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |