gpuMagic
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see gpuMagic.
An openCL compiler with the capacity to compile R functions and run the code on GPU
Bioconductor version: 3.17
The package aims to help users write openCL code with little or no effort. It is able to compile an user-defined R function and run it on a device such as a CPU or a GPU. The user can also write and run their openCL code directly by calling .kernel function.
Author: Jiefei Wang [aut, cre], Martin Morgan [aut]
Maintainer: Jiefei Wang <szwjf08 at gmail.com>
citation("gpuMagic")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gpuMagic")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gpuMagic")| Customized_opencl_code | HTML | R Script |
| quickStart | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0), methods, utils |
| Imports | Deriv, DescTools, digest, pryr, stringr, BiocGenerics |
| System Requirements | 1. C++11, 2. a graphic driver or a CPU SDK. 3. ICD loader For Windows user, an ICD loader is required at C:/windows/system32/OpenCL.dll (Usually it is installed by the graphic driver). For Linux user (Except mac): ocl-icd-opencl-dev package is required. For Mac user, no action is needed for the system has installed the dependency. 4. GNU make |
| URL | |
| Bug Reports | https://github.com/Jiefei-Wang/gpuMagic/issues |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gpuMagic_1.16.0.tar.gz |
| Windows Binary | gpuMagic_1.16.0.zip |
| macOS Binary (x86_64) | gpuMagic_1.16.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/gpuMagic |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gpuMagic |
| Bioc Package Browser | https://code.bioconductor.org/browse/gpuMagic/ |
| Package Short Url | https://bioconductor.org/packages/gpuMagic/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |