Xeva
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see Xeva.
Analysis of patient-derived xenograft (PDX) data
Bioconductor version: 3.17
The Xeva package provides efficient and powerful functions for patient-drived xenograft (PDX) based pharmacogenomic data analysis. This package contains a set of functions to perform analysis of patient-derived xenograft data. This package was developed by the BHKLab, for further information please see our documentation.
Author: Arvind Mer [aut], Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>
citation("Xeva")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Xeva")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Xeva")| The Xeva User's Guide | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, GeneExpression, Pharmacogenetics, Pharmacogenomics, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6) |
| Imports | methods, stats, utils, BBmisc, Biobase, grDevices, ggplot2, scales, ComplexHeatmap, parallel, doParallel, Rmisc, grid, nlme, PharmacoGx, downloader |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/bhklab/Xeva/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Xeva_1.16.0.tar.gz |
| Windows Binary | Xeva_1.16.0.zip |
| macOS Binary (x86_64) | Xeva_1.16.0.tgz |
| macOS Binary (arm64) | Xeva_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Xeva |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Xeva |
| Bioc Package Browser | https://code.bioconductor.org/browse/Xeva/ |
| Package Short Url | https://bioconductor.org/packages/Xeva/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |