SCArray
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SCArray.
Large-scale single-cell RNA-seq data manipulation with GDS files
Bioconductor version: 3.17
Provides large-scale single-cell RNA-seq data manipulation using Genomic Data Structure (GDS) files. It combines dense and sparse matrices stored in GDS files and the Bioconductor infrastructure framework (SingleCellExperiment and DelayedArray) to provide out-of-memory data storage and large-scale manipulation using the R programming language.
Author: Xiuwen Zheng [aut, cre] 
Maintainer: Xiuwen Zheng <xiuwen.zheng at abbvie.com>
citation("SCArray")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SCArray")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SCArray")| Overview | HTML | |
| Single-cell RNA-seq data manipulation using GDS files | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, Infrastructure, RNASeq, SingleCell, Software |
| Version | 1.8.4 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-3 |
| Depends | R (>= 3.5.0), gdsfmt(>= 1.36.0), methods, DelayedArray(>= 0.16.0) |
| Imports | S4Vectors, utils, Matrix, BiocParallel, DelayedMatrixStats, SummarizedExperiment, SingleCellExperiment, BiocSingular |
| System Requirements | |
| URL | https://github.com/AbbVie-ComputationalGenomics/SCArray |
See More
| Suggests | BiocGenerics, scater, scuttle, uwot, RUnit, knitr, markdown, rmarkdown, rhdf5, HDF5Array |
| Linking To | |
| Enhances | |
| Depends On Me | SCArray.sat |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SCArray_1.8.4.tar.gz |
| Windows Binary | SCArray_1.8.4.zip |
| macOS Binary (x86_64) | SCArray_1.8.4.tgz |
| macOS Binary (arm64) | SCArray_1.8.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SCArray |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SCArray |
| Bioc Package Browser | https://code.bioconductor.org/browse/SCArray/ |
| Package Short Url | https://bioconductor.org/packages/SCArray/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |