ReactomeContentService4R
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ReactomeContentService4R.
Interface for the Reactome Content Service
Bioconductor version: 3.17
Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.
Author: Chi-Lam Poon [aut, cre] 
, Reactome [cph]
Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>
citation("ReactomeContentService4R")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ReactomeContentService4R")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ReactomeContentService4R")| ReactomeContentService4R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Pathways, Reactome, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | Apache License (>= 2.0) | file LICENSE |
| Depends | |
| Imports | httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel |
| System Requirements | |
| URL | https://github.com/reactome/ReactomeContentService4R |
| Bug Reports | https://github.com/reactome/ReactomeContentService4R/issues |
See More
| Suggests | pdftools, testthat, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ReactomeGraph4R |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ReactomeContentService4R_1.8.0.tar.gz |
| Windows Binary | ReactomeContentService4R_1.8.0.zip |
| macOS Binary (x86_64) | ReactomeContentService4R_1.8.0.tgz |
| macOS Binary (arm64) | ReactomeContentService4R_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ReactomeContentService4R |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ReactomeContentService4R |
| Bioc Package Browser | https://code.bioconductor.org/browse/ReactomeContentService4R/ |
| Package Short Url | https://bioconductor.org/packages/ReactomeContentService4R/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |