PrecisionTrialDrawer
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PrecisionTrialDrawer.
A Tool to Analyze and Design NGS Based Custom Gene Panels
Bioconductor version: 3.17
A suite of methods to design umbrella and basket trials for precision oncology.
Author: Giorgio Melloni, Alessandro Guida, Luca Mazzarella
Maintainer: Giorgio Melloni <melloni.giorgio at gmail.com>
citation("PrecisionTrialDrawer")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PrecisionTrialDrawer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6) |
| Imports | graphics, grDevices, stats, utils, methods, cBioPortalData, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, dplyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/PrecisionTrialDrawer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PrecisionTrialDrawer |
| Package Short Url | https://bioconductor.org/packages/PrecisionTrialDrawer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |