NanoStringNCTools
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see NanoStringNCTools.
NanoString nCounter Tools
Bioconductor version: 3.17
Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.
Author: Patrick Aboyoun [aut], Nicole Ortogero [cre], Zhi Yang [ctb]
Maintainer: Nicole Ortogero <nortogero at nanostring.com>
citation("NanoStringNCTools")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NanoStringNCTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoStringNCTools")| Introduction to the NanoStringRCCSet Class | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | MIT |
| Depends | R (>= 3.6), Biobase, S4Vectors, ggplot2 |
| Imports | BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf |
| Linking To | |
| Enhances | |
| Depends On Me | GeomxTools, GeoMxWorkflows |
| Imports Me | GeoDiff |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | NanoStringNCTools_1.8.0.tar.gz |
| Windows Binary | NanoStringNCTools_1.8.0.zip (64-bit only) |
| macOS Binary (x86_64) | NanoStringNCTools_1.8.0.tgz |
| macOS Binary (arm64) | NanoStringNCTools_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/NanoStringNCTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NanoStringNCTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/NanoStringNCTools/ |
| Package Short Url | https://bioconductor.org/packages/NanoStringNCTools/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |