optimalFlow

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see optimalFlow.

Bioconductor version: 3.16

Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Citation (from within R, enter citation("optimalFlow")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("optimalFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("optimalFlow")

optimalFlow: optimal-transport approach to Flow Cytometry analysis	HTML	R Script
Reference Manual	PDF

biocViews	FlowCytometry, Software, Technology
Version	1.10.0
In Bioconductor since	BioC 3.11 (R-4.0) (4 years)
License	Artistic-2.0
Depends	dplyr, optimalFlowData, rlang (>= 0.4.0)
Imports	transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
System Requirements
URL

Suggests	knitr, BiocStyle, rmarkdown, magick
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	optimalFlow_1.10.0.tar.gz
Windows Binary	optimalFlow_1.10.0.zip
macOS Binary (x86_64)	optimalFlow_1.10.0.tgz
macOS Binary (arm64)	optimalFlow_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/optimalFlow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/optimalFlow
Bioc Package Browser	https://code.bioconductor.org/browse/optimalFlow/
Package Short Url	https://bioconductor.org/packages/optimalFlow/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive