Changes in version 3.0.1                        

  - Fix bug in logLogsticRegression function causing tests to fail due
    to loss of numerical precision in floating point values

                        Changes in version 3.0.0                        

  - Bioconductor fall 2022 release!
  - Includes updated TreatmentResponeExperiment class for storing drug
    combination experiments.

2.5.3

  - Added PharmacoSet2 constructor to allow creation of PSets with
    updated class definition introducted in BioC 3.13
  - The sensitivity slot is now required to be a
    TreatmentResponseExperiment
  - The molecularProfiles slot is now required to be a
    MultiAssayExperiment
  - The original constructor and all accessors remain in the package for
    full backwards compatibility

v2.5.2

  - Fix: remove 'fdr' item from geneDrugSensitivity return vector

v2.5.1

  - Fix: reverted GDSCsmall.rda and CCLEsmall.rda to original data
    format; they were accidentally pushed with MultiAssayExperiments in
    @molecularProfiles

v2.5.0

  - Spring Bioconductor release!

v2.1.12

  - Added experimental support for a new class, the LongTable, for
    storing the sensitivity data in a PharmacoSet.
  - Because this is not well tested, we have left not updated the PSets
    available via the downloadPSets function.
  - Instead we have provided a convenient function,
    convertSensitivitySlotToLongTable, which takes in a PharmacoSet
    object, converts the data in the @sensitivty slot to a LongTable and
    returns an updated PharmacoSet object.
  - The LongTable class will be used in the future to allow PharmacoSets
    to store treatment response experiments with multiple drugs or
    cell-lines, greatly expanding the variety of data which can be
    stored in a PharmacoSet object.
  - For more details on the LongTable class, please see the vignette in
    the CoreGx package.

v2.0.0

  - PharmacoGx now depends on CoreGx, a package designed to abstract
    core functionality from PharmacoGx for use in other Gx suite
    packages
  - PharmacoSet class has been modified to store molecular profile data
    in the SummarizedExperiment class instead of the the ExpressionSet
    class
  - Argument pSet in most PharmacoSet accessor methods now converted to
    object instead; this will break code using names parameters for
    these accessor methods