BiocSet
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see BiocSet.
Representing Different Biological Sets
Bioconductor version: 3.14
BiocSet displays different biological sets in a triple tibble format. These three tibbles are `element`, `set`, and `elementset`. The user has the abilty to activate one of these three tibbles to perform common functions from the dplyr package. Mapping functionality and accessing web references for elements/sets are also available in BiocSet.
Author: Kayla Morrell [aut, cre], Martin Morgan [aut], Kevin Rue-Albrecht [ctb], Lluís Revilla Sancho [ctb]
Maintainer: Kayla Morrell <kayla.morrell at roswellpark.org>
citation("BiocSet")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocSet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocSet")| BiocSet: Representing Element Sets in the Tidyverse | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GO, GeneExpression, KEGG, Software |
| Version | 1.8.1 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6), dplyr |
| Imports | methods, tibble, utils, rlang, plyr, S4Vectors, BiocIO, AnnotationDbi, KEGGREST, ontologyIndex, tidyr |
| System Requirements | |
| URL |
See More
| Suggests | GSEABase, airway, org.Hs.eg.db, DESeq2, limma, BiocFileCache, GO.db, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | RegEnrich |
| Imports Me | sparrow |
| Suggests Me | dearseq |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocSet_1.8.1.tar.gz |
| Windows Binary | BiocSet_1.8.1.zip |
| macOS 10.13 (High Sierra) | BiocSet_1.8.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocSet |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocSet |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocSet/ |
| Package Short Url | https://bioconductor.org/packages/BiocSet/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |