timecoursedata
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see timecoursedata.
A data package for timecourse RNA-seq and microarray gene expression data sets
Bioconductor version: 3.13
This data package contains timecourse gene expression data sets. The first dataset, from Shoemaker et al, consists of microarray samples from lung tissue of mice exposed to different influenzy strains from 14 timepoints. The two other datasets are leaf and root samples from sorghum crops exposed to pre- and post-flowering drought stress and a control condition, sampled across the plants lifetime.
Author: Elizabeth Purdom [aut] 
, Nelle Varoquaux [aut, cre]
Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>
citation("timecoursedata")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("timecoursedata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("timecoursedata")| timecoursedata: Time course gene expression datasets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExpressionData, MicroarrayData, RNASeqData |
| Version | 1.2.0 |
| License | BSD 3-clause License + file LICENSE |
| Depends | R (>= 4.0), SummarizedExperiment |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | testthat (>= 1.0.0), knitr, rmarkdown, covr, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | moanin |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | timecoursedata_1.2.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/timecoursedata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/timecoursedata |
| Package Short Url | https://bioconductor.org/packages/timecoursedata/ |
| Package Downloads Report | Download Stats |