leeBamViews
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see leeBamViews.
leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009
Bioconductor version: 3.13
data from PMID 19096707; prototype for managing multiple NGS samples
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("leeBamViews")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("leeBamViews")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("leeBamViews")| managing multiple NGS samples with bamViews | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData |
| Version | 1.28.0 |
| License | Artistic 2.0 |
| Depends | R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome |
| Imports | GenomicRanges, GenomicAlignments, methods, S4Vectors, parallel, IRanges |
| System Requirements | |
| URL |
See More
| Suggests | biomaRt, org.Sc.sgd.db, edgeR |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | EDASeq |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | leeBamViews_1.28.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/leeBamViews |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/leeBamViews |
| Package Short Url | https://bioconductor.org/packages/leeBamViews/ |
| Package Downloads Report | Download Stats |