TimerQuant
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see TimerQuant.
Timer Quantification
Bioconductor version: 3.13
Supplementary Data package for tandem timer methods paper by Barry et al. (2015) including TimerQuant shiny applications.
Author: Joseph Barry
Maintainer: Joseph Barry <joseph.barry at embl.de>
Citation (from within R, enter
citation("TimerQuant")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TimerQuant")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TimerQuant")| Supplementary Methods - automatic generation of paper figures | R Script | |
| Supplementary Methods - mathematical derivations | R Script | |
| Reference Manual |
Details
| biocViews | Danio_rerio_Data, ExperimentData, HighThroughputImagingData, Tissue |
| Version | 1.22.0 |
| License | Artistic-2.0 |
| Depends | shiny |
| Imports | ggplot2, grid, gridExtra, deSolve, dplyr, locfit |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, reshape2, knitr, shinyBS |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TimerQuant_1.22.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TimerQuant |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TimerQuant |
| Package Short Url | https://bioconductor.org/packages/TimerQuant/ |
| Package Downloads Report | Download Stats |