RNAseqData.HNRNPC.bam.chr14
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see RNAseqData.HNRNPC.bam.chr14.
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells
Bioconductor version: 3.13
The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.
Author: Hervé Pagès
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("RNAseqData.HNRNPC.bam.chr14")
):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAseqData.HNRNPC.bam.chr14")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData |
Version | 0.30.0 |
License | LGPL |
Depends | |
Imports | |
System Requirements | |
URL | http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/ |
See More
Suggests | GenomicAlignments, BiocManager |
Linking To | |
Enhances | |
Depends On Me | samExploreR, sequencing |
Imports Me | |
Suggests Me | BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | RNAseqData.HNRNPC.bam.chr14_0.30.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RNAseqData.HNRNPC.bam.chr14 |
Package Short Url | https://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/ |
Package Downloads Report | Download Stats |