LungCancerLines
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see LungCancerLines.
Reads from Two Lung Cancer Cell Lines
Bioconductor version: 3.13
Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.
Author: Cory Barr, Michael Lawrence
Maintainer: Cory Barr <barr.cory at gene.com>
Citation (from within R, enter
citation("LungCancerLines")
):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LungCancerLines")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | CancerData, ExperimentData, Genome, LungCancerData, RNASeqData |
Version | 0.30.0 |
License | Artistic-2.0 |
Depends | |
Imports | Rsamtools |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | gmapR, HTSeqGenie, VariantTools |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | LungCancerLines_0.30.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/LungCancerLines |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LungCancerLines |
Package Short Url | https://bioconductor.org/packages/LungCancerLines/ |
Package Downloads Report | Download Stats |