Changes in version 1.8.0                        

  - implemented a novel approach to scoring that uses measurements from
    panel-based tests such as RT-qPCR and nanostring
  - implemented a function that returns a set of stable genes we have
    identified in carcinomas and in blood
  - fixed bugs in the multiScore function that produced errors when
    scoring a single sample
  - fixed bugs in the generateNull function that produced errors when
    assessing a single geneset
  - fixed bugs in the vignette

                        Changes in version 1.5.1                        

  - added link to the F1000research published workflow that demonstrates
    usage of singscore on a real dataset
    (https://f1000research.com/articles/8-776/v2)
  - allow labelling of samples on dispersion plots (plotDispersion) in a
    similar manner to landscape plots (projectScoreLandscape)

                        Changes in version 1.3.2                        

  - allow continous and discrete annotations for plotDispersion and
    projectScoreLandscape. Annotations can now be part of the score
    data.frame and then specified as a column name
  - plot themes updated
  - citation updated: cite the singscore manuscript
  - number of bins for the hexbin plot in plotLandscape is determined
    from the data
  - fixed bug in calculation of scores. Boundary calculation was
    previously done with all genes in the gene-set. It should be done
    with genes present in both the gene-set and the data (i.e. after
    filtering out those not measured in the data).
  - TotalDispersion now estimated as the mean of dispersions from the
    up- and down-regulated gene sets instead of the sum (previous
    estimate divided by 2)

                        Changes in version 1.2.2                        

  - created a website for the package
  - added ORCID IDs for authors
  - added sticker for package

                       Changes in version 0.99.9                        

  - remove internal keyword from generateNull

                       Changes in version 0.99.8                        

  - vectorize getPvals
  - make toy_epxr_se

                       Changes in version 0.99.5                        

  - represent expression data in SummarizedExperiement dataset
  - function input checkings
  - R code re-organised

                       Changes in version 0.99.3                        

  - change argument name bidirectional to knownDirection, default as
    TRUE

                       Changes in version 0.99.2                        

  - bidirection flag added to simpleScore() function
  - optimise generateNull() function
  - change GSEABase from import to Depends