Changes in version 2.0 rpx 2.0.3 - New PXDataset2 class with richer interface and more stable data downloading functions. PXDataset and PXDataset2 work transparently and PXDataset2 is now default. Backported from 2.1.8. rpx 2.0.2 - The PXDataset stores all its attributes and is now also cached to minimise access to the failing remote resource. Backported from 2.1.7. - pxannouced() paused (see #7). Changes in version 1.99.0 rpx 1.99.8 - Remove rappdirs from Suggests. rpx 1.99.7 - Add markdown to Suggests. rpx 1.99.6 - Switching to tools::R_user_dir() from rappdirs::user_cache_dir() to set package cache directory, following changes in BiocFileCache (see for details). rpx 1.99.5 - User can pass an own cache when downloading files <2021-04-03 Sat> rpx 1.99.4 - Automatically detect/fix correct url <2021-03-22 Mon> rpx 1.99.3 - Use MS:1002852 to get URL when PRIDE:0000411 returns empty string. rpx 1.99.2 - Don't ask for cache location in non-interactive mode. This forces the usage of the default cache location (rather than usage of a Rtmp directory) and enables reusage of a persistent cache over different build/check cycles. rpx 1.99.1 - Using BiocFileCache to cache PXD files that are downloaded. Changes in version 1.27.0 - New devel version Changes in version 1.23 Changes in version 1.23.1 - Define modifiable rpx_fix_issue_5 <2019-11-26 Tue> Changes in version 1.23.0 - New devel version Changes in version 1.21 Changes in version 1.21.3 - Update NEWS titles Changes in version 1.21.2 - Temporary fix for issue #5 (wrong URL from PRIDE server) <2019-10-02 Wed> Changes in version 1.21.1 - Don't set old class <2019-08-09 Fri> Changes in version 1.19 Changes in version 1.19.4 - Delete plain NEWS now that R supports NEWS.md Changes in version 1.19.3 - Fix NEWS Changes in version 1.19.2 - Mention setting method on Windows <2019-04-16 Tue> Changes in version 1.19.1 - Add ImmunoOncology biocView Changes in version 1.19.0 - New release for Bioc 3.9 Changes in version 1.18 Changes in version 1.18.0 - New release for Bioc 3.8 Changes in version 1.17 Changes in version 1.17.2 - Update NEWS and pkgdown site Changes in version 1.17.1 - replace BiocInstaller biocLite mentions with BiocManager Changes in version 1.17.0 - New version for Bioconductor devel Changes in version 1.16 Changes in version 1.16.0 - New version for Bioconductor release Changes in version 1.13 Changes in version 1.13.5 - Nothing yet Changes in version 1.13.4 - Restore reference unit test Changes in version 1.13.3 - No commit Changes in version 1.13.2 - Fix errors due to changes on PX side. PXD000001 reference remains untested - see https://twitter.com/lgatt0/status/885091284142239744 for details. <2017-07-12 Wed> Changes in version 1.13.1 - Using xml2 <2017-06-13 Tue> - Use functions instead of methods <2017-06-13 Tue> Changes in version 1.13.0 - Bioc devel 3.6 Changes in version 1.12 Changes in version 1.12.1 - Using xml2 (backported from devel) <2017-06-13 Tue> - Use functions instead of methods (backported from devel) <2017-06-13 Tue> Changes in version 1.12.0 - Bioc release 3.5 Changes in version 1.11 Changes in version 1.11.0 - Bioc devel 3.4 Changes in version 1.11.4 - Update unit test to reflect upstream changes <2017-02-26 Sun> Changes in version 1.11.3 - pxget gains a destdir argument to specify the destination to which files should be downloaded <2017-01-27 Fri> Changes in version 1.11.2 - Update unit test to reflect upstream changes <2017-01-25 Wed> Changes in version 1.11.1 - Migrate vignette to BiocStyle::html_document2 <2016-12-22 Thu> - Use NEWS.md <2016-12-28 Wed> Changes in version 1.11.0 - Bioconductor devel 3.5 Changes in version 1.10 Changes in version 1.10.0 - Bioconductor release 3.4 Changes in version 1.9 Changes in version 1.9.4 - Updating unit tests <2016-10-04 Tue> Changes in version 1.9.3 - Update vignette to use readMzTabData v0.9 <2016-07-24 Sun> Changes in version 1.5 Changes in version 1.5.1 - unit tests <2015-06-30 Tue> - export and document pxnodes <2015-06-30 Tue> Changes in version 1.5.0 - Bioc version 3.2 (devel) Changes in version 1.4 Changes in version 1.4.0 - Bioc version 3.1 (release) Changes in version 1.3 Changes in version 1.3.1 - update vignette to reflect new files in px example, and avoid downloaded the raw data [2015-03-31 Tue] Changes in version 0.99 Changes in version 0.99.9 - In pxref, dealing with cases without any-r pending publications [2014-04-01 Tue] Changes in version 0.99.8 - fix leftover issues from renaming package (d.tenenbaum) [2014-03-30 Sun] Changes in version 0.99.7 - renamed to rpx due to CRAN name clash [2014-03-28] Changes in version 0.99.6 - more typos in vignette [2014-03-12 Wed] Changes in version 0.99.5 - Suggestions, biocView and typos reported by Nate Hayden [2014-03-12 Wed] - added Runit test [2014-03-12 Wed] - use ae fonts in vignette [2014-03-12 Wed] Changes in version 0.99.4 - Update reference in man and vignette [2014-03-11 Tue] - Typos in vignette [2014-03-11 Tue] Changes in version 0.99.3 - reverting pxannounced to empty signature to fix warning [2014-03-05 Wed] Changes in version 0.99.2 - replacing download.file by getURL to download annoucement rss-ver https <2014-03-05 Wed> Changes in version 0.99.1 - fixing pxfiles ending by \r-n Windows [2014-03-05 Wed] Changes in version 0.99.0 - added a vignette [2014-03-05 Wed] - handle invalid identifiers [2014-03-05 Wed]