Changes in version 1.2.3 - fix the issue of gridlines when some data is removed. (2021-08-25, Wed) - fix the compute_aes to better compatible with ggplot2 (>=3.3.4) - x of mapping supporting function. e.g. log(x+1). Changes in version 1.2.1 - update citation Changes in version 1.2.0 - new version release, and bump new devel version (1.3.0). (2021-05-20, Thu) Changes in version 1.1.12 - import ggtree to pass BiocCheck. (2021-05-14, Fri) Changes in version 1.1.11 - fix a bug to solve the problem (variable of x has NA). (2021-05-13, Thu) - https://github.com/YuLab-SMU/ggtreeExtra/issues/8 Changes in version 1.1.10 - fix a bug for compute_aes ( This is to support mapping aesthetics (x, not y in aes of geom_fruit) to functions of variables). (2021-05-10, Mon) Changes in version 1.1.9 - don't inherit aes (global aes from the ggtree). (2021-04-28, Wed) - subset in mapping also supports the data from ggtree object. (2021-04-29, Thu) - support mapping aesthetics (x, not y in aes of geom_fruit) to functions of variables. (2021-05-07, Fri) Changes in version 1.1.8 - add new position functions: position_jitterx and position_jitterdodgex. (2021-04-23, Fri) - update vignettes. (2021-04-25, Sun) Changes in version 1.1.7 - update man and vignettes. (2021-04-06, Tue) Changes in version 1.1.6 - check whether the value of x is numeric to avoid warnings when x is factor. (2021-02-24, Wed) - remove axis of first geom_tile of vignettes, since the axis of this layer is meaningless. (2021-02-24, wed) Changes in version 1.1.5 - support title of panel. (2021-02-03, Wed) - https://github.com/YuLab-SMU/ggtreeExtra/issues/7 - add citation info. (2021-02-04, Thu) - don't use svg dev. (2021-02-04, Thu) Changes in version 1.1.4 - add position_points_jitterx and position_raincloudx for geom of ggridges. (2021-01-20, Wed) - supports geom_msa of ggmsa. (2021-01-21, Thu) - specific position method for specific geom method automatically. (2021-01-27, Wed) Changes in version 1.1.3 - support multiple density plot from geom of ggridges. (2020-12-31, Thu) geom_density_ridges, geom_density_ridges2, geom_density_ridges_gradient, geom_ridgeline, geom_ridgeline_gradient. Changes in version 1.1.2 - support subset in mapping, but the data should also be provided. (2020-11-30, Mon) - add default position methods for common geometric functions. (2020-12-18, Fri) Changes in version 1.0.0 - Bioconductor 3.12 release (2020-10-28, Wed) the 0.99.0 or 0.99.x version mean I am submitting it to Bioconductor. (20200710, Fri) - 0.99.1 change svg of dev to png, set the dpi to 300. (20200714, Tue) - 0.99.2 geom_axis_text support the single column axis. (20200717, Fri) - 0.99.3 support inward_circular tree and geom_axis_text was build by position_identityx. (20200724, Fri) - 0.99.4 fix the constant of barplot bug. (2020-07-25, Sat) - 0.99.5 better support the layer when x axis is reverse. (2020-07-29, Wed) - 0.99.6 support adjusting the angle of geom_text. (2020-07-31, Fri) - 0.99.7 revise stylistic comment of R code and examples. (2020-08-04, Tue) - 0.99.8 change the formatting of code chunk. (2020-08-04, Tue) 0.99.9 - modified the color aesthetics for geom_boxplot and geom_violin. (2020-08-14, Fri) - keep all column of data of tree when it merge with external data. (2020-08-14, Fri) 0.99.10 - add geom_ringline to create the grid line of external ring layers. (2020-08-21, Fri) - the addbrink and other argument control the line of margin has been removed. (2020-08-21, Fri) - add pseudo axis line in geom_axis_text. (2020-08-21, Fri) 0.99.11 - geom_axis_text and geom_ringline are removed. (2020-08-24, Mon) - user can use axis.params=list(add.axis=TRUE) and grid.params=list(add.grid=TRUE) to add the axis and grid lines of external layers, respectively. (2020-08-24, Mon) 0.99.12 - add upper and lower grid lines of y. (2020-08-26, Wed) 0.99.13 - update the method of ggplot_add.layer_fruits, when the offset between different fruit_plot is different, will use each offset in each fruit_plot. (2020-08-31, Mon) 0.99.14 - update normxy to support dendrogram layout. (2020-09-02, Wed) 0.99.15 - add add.another.axis in geom_fruit to add another axis. (2020-09-04, Fri) - update normxy to fix the bug when negative values are present. (2020-09-04, Fri) - update ggplot_add method of geom_fruit to support the orientation which x axis of the external is from bottom to top, when layout is dendrogram. (2020-09-04, Fri) 0.99.16 - change add.axis in axis.params from TRUE or FALSE to x or y or xy. (2020-09-05, Sat) - remove add.grid in grid.params and default of grid.params is NULL. (2020-09-07, Mon) - update method of axis tick and remove nbreaks, the breaks will be calculate by pretty. (2020-09-07, Mon) - use substitute to allow list of axis.params or grid.params has empty argument, eg grid.params=list(color="black",). (2020-09-07, Mon) 0.99.17 - change add.axis to axis in axis.params. (2020-09-08, Tue) 0.99.18 - add nbreak in axis.params of geom_fruit, it will be sent to n of pretty to generate the desired number of intervals of axis. (2020-09-08, Tue) 0.99.19 - modified the namespace, remove geom_vline, add geom_segment. (2020-09-11, Fri) Changes in version 0.0.1 - add vignettes. (20200707, Tue) Changes in version 0.0.0.9 - support add the axis text of extra layer of geom_fruit using geom_axis_text. (20200630, Tue) - optimize normalization of extra layer data. (20200701, Wed) - fixed bug: changed layer to layers. (20200703, Fri) Changes in version 0.0.0.8 - support data of NULL in geom_fruit, and user can add data by %<+% of ggtree. (20200628, Sun) Changes in version 0.0.0.7 - add geom_fruit_list to support add the same position for multi layers. (20200622, Mon) Changes in version 0.0.0.6 - automatically detect the 'position'. (20200612) Changes in version 0.0.0.5 - change pratio parameter to pwidth and remove tippoint parameter. - change geom_add function to geom_totree function. (20200610) Changes in version 0.0.0.4 - support tip point for geom_star or geom_point - support geom_boxplot and geom_violin (20200606) Changes in version 0.0.0.3 - add marginal line, and when x is character, the new x normalized should be started with zero. (20200601) Changes in version 0.0.0.2 - The distance between the panel and tree can be adjusted using the "offset". The value of associate panel were normalized in the range of x of tree. The width can be adjusted using the "pratio". The "offset" and "pratio" are the ratio related to tree. (20200529) Changes in version 0.0.0.1 - first version to github (20200528)