CHANGES IN VERSION 1.3.5 ------------------------ New Features: * Integrate enrichment analysis results by TF with rankTFs(). The function uses the output of getCMstats() to perform Wilcoxon rank-sum test or GSEA on the ChIPs ordered by distance score. New default database: * The TF-Gene database included with TFEA.ChIP was built using ReMap's ChIP-seq collection (v. 2018) and GeneHancer's Double Elite regulatory regions (v. 4.8). Because of memory limits, the internal database included in TFEA.ChIP only stores ChIP-gene information from the 1060 ChIP-seqs from the ENCODE project included in ReMap 2018. To download the full database, as well as other ready-to-use databases generated for TFEA.ChIP, visit: https://github.com/LauraPS1/TFEA.ChIP_downloads