tweeDEseq

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see tweeDEseq.

RNA-seq data analysis using the Poisson-Tweedie family of distributions


Bioconductor version: 3.13

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

Citation (from within R, enter citation("tweeDEseq")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tweeDEseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tweeDEseq")
tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.38.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL (>= 2)
Depends R (>= 2.12.0)
Imports MASS, limma, edgeR, parallel, cqn
System Requirements
URL http://www.creal.cat/jrgonzalez/software.htm
See More
Suggests tweeDEseqCountData, xtable
Linking To
Enhances
Depends On Me
Imports Me ptmixed
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tweeDEseq_1.38.0.tar.gz
Windows Binary tweeDEseq_1.38.0.zip
macOS 10.13 (High Sierra) tweeDEseq_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tweeDEseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tweeDEseq
Bioc Package Browser https://code.bioconductor.org/browse/tweeDEseq/
Package Short Url https://bioconductor.org/packages/tweeDEseq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive