tidySingleCellExperiment
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see tidySingleCellExperiment.
Brings SingleCellExperiment to the Tidyverse
Bioconductor version: 3.13
tidySingleCellExperiment is an adapter that abstracts the 'SingleCellExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'
Author: Stefano Mangiola [aut, cre]
Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>
citation("tidySingleCellExperiment")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tidySingleCellExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tidySingleCellExperiment")| Overview of the tidySingleCellExperiment package | HTML | R Script |
| Reference Manual |
Details
| biocViews | AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0), SingleCellExperiment |
| Imports | SummarizedExperiment, dplyr, tibble, tidyr, ggplot2, plotly, magrittr, rlang, purrr, lifecycle, methods, utils, S4Vectors, tidyselect, ellipsis, pillar, stringr, cli, fansi |
| System Requirements | |
| URL | https://github.com/stemangiola/tidySingleCellExperiment |
| Bug Reports | https://github.com/stemangiola/tidySingleCellExperiment/issues |
See More
| Suggests | BiocStyle, testthat, knitr, markdown, SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph, GGally, Matrix, uwot, celldex, dittoSeq, EnsDb.Hsapiens.v86 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tidySingleCellExperiment_1.2.1.tar.gz |
| Windows Binary | tidySingleCellExperiment_1.2.1.zip |
| macOS 10.13 (High Sierra) | tidySingleCellExperiment_1.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tidySingleCellExperiment |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tidySingleCellExperiment |
| Bioc Package Browser | https://code.bioconductor.org/browse/tidySingleCellExperiment/ |
| Package Short Url | https://bioconductor.org/packages/tidySingleCellExperiment/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |