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riboSeqR

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments


Bioconductor version: 3.13

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Citation (from within R, enter citation("riboSeqR")):

Installation

To install this package, start R (version "4.1") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")
riboSeqR PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Genetics, RiboSeq, Sequencing, Software, Visualization
Version 1.26.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-3
Depends R (>= 3.0.2), methods, GenomicRanges, abind
Imports Rsamtools, IRanges, baySeq, GenomeInfoDb, seqLogo
System Requirements
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Suggests BiocStyle, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package riboSeqR_1.26.0.tar.gz
Windows Binary riboSeqR_1.26.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) riboSeqR_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/riboSeqR
Bioc Package Browser https://code.bioconductor.org/browse/riboSeqR/
Package Short Url https://bioconductor.org/packages/riboSeqR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive