proBAMr
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see proBAMr.
Generating SAM file for PSMs in shotgun proteomics data
Bioconductor version: 3.13
Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>
Citation (from within R, enter
citation("proBAMr")
):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("proBAMr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proBAMr")
Introduction to proBAMr | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software, Visualization |
Version | 1.26.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.0.1), IRanges, AnnotationDbi |
Imports | GenomicRanges, Biostrings, GenomicFeatures, rtracklayer |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | proBAMr_1.26.0.tar.gz |
Windows Binary | proBAMr_1.26.0.zip |
macOS 10.13 (High Sierra) | proBAMr_1.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/proBAMr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/proBAMr |
Bioc Package Browser | https://code.bioconductor.org/browse/proBAMr/ |
Package Short Url | https://bioconductor.org/packages/proBAMr/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.13 | Source Archive |