onlineFDR
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see onlineFDR.
Online error control
Bioconductor version: 3.13
This package allows users to control the false discovery rate (FDR) or familywise error rate (FWER) for online hypothesis testing, where hypotheses arrive sequentially in a stream. In this framework, a null hypothesis is rejected based only on the previous decisions, as the future p-values and the number of hypotheses to be tested are unknown.
Author: David S. Robertson [aut, cre], Lathan Liou [aut], Aaditya Ramdas [aut], Adel Javanmard [ctb], Andrea Montanari [ctb], Jinjin Tian [ctb], Tijana Zrnic [ctb], Natasha A. Karp [aut]
Maintainer: David S. Robertson <david.robertson at mrc-bsu.cam.ac.uk>
citation("onlineFDR")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("onlineFDR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("onlineFDR")| Advanced usage of onlineFDR | HTML | R Script |
| The theory behind onlineFDR | HTML | R Script |
| Using the onlineFDR package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MultipleComparison, Software, StatisticalMethod |
| Version | 2.0.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | stats, Rcpp, RcppProgress, dplyr, tidyr, ggplot2, progress |
| System Requirements | |
| URL | https://dsrobertson.github.io/onlineFDR/index.html |
See More
| Suggests | knitr, rmarkdown, testthat, covr |
| Linking To | Rcpp, RcppProgress |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | onlineFDR_2.0.0.tar.gz |
| Windows Binary | onlineFDR_2.0.0.zip |
| macOS 10.13 (High Sierra) | onlineFDR_2.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/onlineFDR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/onlineFDR |
| Bioc Package Browser | https://code.bioconductor.org/browse/onlineFDR/ |
| Package Short Url | https://bioconductor.org/packages/onlineFDR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |