netboost
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see netboost.
Network Analysis Supported by Boosting
Bioconductor version: 3.13
Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.
Author: Pascal Schlosser [aut, cre], Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]
Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>
citation("netboost")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("netboost")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netboost")| The Netboost users guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics |
| Version | 2.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0) |
| Imports | Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, R.utils |
| System Requirements | GNU make, Bash, Perl, Gzip |
| URL | https://bioconductor.org/packages/release/bioc/html/netboost.html |
| Bug Reports | https://github.com/PascalSchlosser/netboost/issues |
See More
| Suggests | knitr, rmarkdown |
| Linking To | Rcpp, RcppParallel |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | netboost_2.0.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | netboost_2.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/netboost |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/netboost |
| Bioc Package Browser | https://code.bioconductor.org/browse/netboost/ |
| Package Short Url | https://bioconductor.org/packages/netboost/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |