ldblock
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see ldblock.
data structures for linkage disequilibrium measures in populations
Bioconductor version: 3.13
Define data structures for linkage disequilibrium measures in populations.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("ldblock")
):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ldblock")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ldblock")
ldblock package: linkage disequilibrium data structures | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Software |
Version | 1.22.1 |
In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5), methods |
Imports | Matrix, snpStats, VariantAnnotation, GenomeInfoDb, httr, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles(>= 1.13.6), BiocGenerics(>= 0.25.1) |
System Requirements | |
URL |
See More
Suggests | RUnit, knitr, BiocStyle, gwascat, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ldblock_1.22.1.tar.gz |
Windows Binary | ldblock_1.22.1.zip |
macOS 10.13 (High Sierra) | ldblock_1.22.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ldblock |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ldblock |
Bioc Package Browser | https://code.bioconductor.org/browse/ldblock/ |
Package Short Url | https://bioconductor.org/packages/ldblock/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.13 | Source Archive |