immunoClust
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see immunoClust.
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
Bioconductor version: 3.13
immunoClust is a model based clustering approach for Flow Cytometry samples. The cell-events of single Flow Cytometry samples are modelled by a mixture of multinominal normal- or t-distributions. The cell-event clusters of several samples are modelled by a mixture of multinominal normal-distributions aiming stable co-clusters across these samples.
Author: Till Soerensen [aut, cre]
Maintainer: Till Soerensen <till.soerensen at bioretis.com>
citation("immunoClust")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("immunoClust")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("immunoClust")| immunoClust package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, Clustering, FlowCytometry, ImmunoOncology, SingleCell, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6), flowCore |
| Imports | methods, stats, graphics, grid, lattice, grDevices |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, utils, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | immunoClust_1.24.0.tar.gz |
| Windows Binary | immunoClust_1.24.0.zip |
| macOS 10.13 (High Sierra) | immunoClust_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/immunoClust |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/immunoClust |
| Bioc Package Browser | https://code.bioconductor.org/browse/immunoClust/ |
| Package Short Url | https://bioconductor.org/packages/immunoClust/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |