SISPA

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SISPA.

SISPA: Method for Sample Integrated Set Profile Analysis

Bioconductor version: 3.13

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("SISPA")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SISPA")

SISPA:Method for Sample Integrated Set Profile Analysis	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneSetEnrichment, GenomeWideAssociation, Software
Version	1.22.0
In Bioconductor since	BioC 3.2 (R-3.2) (8.5 years)
License	GPL-2
Depends	R (>= 3.5), genefilter, GSVA, changepoint
Imports	data.table, plyr, ggplot2
System Requirements
URL

Suggests	knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SISPA_1.22.0.tar.gz
Windows Binary	SISPA_1.22.0.zip
macOS 10.13 (High Sierra)	SISPA_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SISPA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SISPA
Bioc Package Browser	https://code.bioconductor.org/browse/SISPA/
Package Short Url	https://bioconductor.org/packages/SISPA/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.13	Source Archive