SEtools
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see SEtools.
SEtools: tools for working with SummarizedExperiment
Bioconductor version: 3.13
This includes a set of tools for working with the SummarizedExperiment class, including merging, melting, aggregation and plotting functions. In particular, SEtools offers a simple interface for plotting complex heatmaps from SE objects.
Author: Pierre-Luc Germain [cre, aut] 
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
citation("SEtools")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SEtools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SEtools")| SEtools | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Software, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL |
| Depends | R (>= 4.0) |
| Imports | S4Vectors, SummarizedExperiment, data.table, seriation, ComplexHeatmap, circlize, methods, BiocParallel, randomcoloR, edgeR, openxlsx, sva, stats, DESeq2, Matrix, grid |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/plger/SEtools |
See More
| Suggests | BiocStyle, knitr, rmarkdown, ggplot2, pheatmap |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SEtools_1.6.0.tar.gz |
| Windows Binary | SEtools_1.6.0.zip |
| macOS 10.13 (High Sierra) | SEtools_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SEtools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SEtools |
| Bioc Package Browser | https://code.bioconductor.org/browse/SEtools/ |
| Package Short Url | https://bioconductor.org/packages/SEtools/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |