RandomWalkRestartMH

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see RandomWalkRestartMH.

Random walk with restart on multiplex and heterogeneous Networks


Bioconductor version: 3.13

This package performs Random Walk with Restart on multiplex and heterogeneous networks. It is described in the following article: "Random Walk With Restart On Multiplex And Heterogeneous Biological Networks". https://www.biorxiv.org/content/early/2017/08/30/134734 .

Author: Alberto Valdeolivas Urbelz <alvaldeolivas at gmail.com>

Maintainer: Alberto Valdeolivas Urbelz <alvaldeolivas at gmail.com>

Citation (from within R, enter citation("RandomWalkRestartMH")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RandomWalkRestartMH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RandomWalkRestartMH")
Random Walk with Restart on Multiplex and Heterogeneous Networks PDF R Script
Reference Manual PDF

Details

biocViews BioCarta, BiomedicalInformatics, GenePrediction, GraphAndNetwork, KEGG, MathematicalBiology, Network, NetworkInference, Pathways, Reactome, Software, SomaticMutation, SystemsBiology
Version 1.12.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL (>= 2)
Depends R (>= 3.5.0)
Imports igraph, Matrix, dnet, methods
System Requirements
URL https://www.biorxiv.org/content/early/2017/08/30/134734
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RandomWalkRestartMH_1.12.0.tar.gz
Windows Binary RandomWalkRestartMH_1.12.0.zip
macOS 10.13 (High Sierra) RandomWalkRestartMH_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RandomWalkRestartMH
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RandomWalkRestartMH
Bioc Package Browser https://code.bioconductor.org/browse/RandomWalkRestartMH/
Package Short Url https://bioconductor.org/packages/RandomWalkRestartMH/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive