MetaVolcanoR
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MetaVolcanoR.
Gene Expression Meta-analysis Visualization Tool
Bioconductor version: 3.13
MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.
Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]
Maintainer: Cesar Prada <cesar.prada at usp.br>
citation("MetaVolcanoR")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaVolcanoR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaVolcanoR")| MetaVolcanoR inputs: differential expression examples | HTML | R Script |
| MetaVolcanoR: Differential expression meta-analysis tool | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0) |
| Imports | methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets |
| System Requirements | |
| URL |
See More
| Suggests | knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaVolcanoR_1.6.0.tar.gz |
| Windows Binary | MetaVolcanoR_1.6.0.zip |
| macOS 10.13 (High Sierra) | MetaVolcanoR_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaVolcanoR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaVolcanoR |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaVolcanoR/ |
| Package Short Url | https://bioconductor.org/packages/MetaVolcanoR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |