LinkHD

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see LinkHD.

LinkHD: a versatile framework to explore and integrate heterogeneous data

Bioconductor version: 3.13

Here we present Link-HD, an approach to integrate heterogeneous datasets, as a generalization of STATIS-ACT (“Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux”), a family of methods to join and compare information from multiple subspaces. However, STATIS-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection.

Author: Laura M. Zingaretti [aut, cre]

Maintainer: "Laura M Zingaretti" <m.lau.zingaretti at gmail.com>

Citation (from within R, enter citation("LinkHD")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LinkHD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LinkHD")

Annotating Genomic Variants	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, MultipleComparison, Regression, Software
Version	1.6.0
In Bioconductor since	BioC 3.10 (R-3.6) (4.5 years)
License	GPL-3
Depends	R (>= 3.6.0), methods, ggplot2, stats
Imports	scales, cluster, graphics, ggpubr, gridExtra, vegan, rio, MultiAssayExperiment, emmeans, reshape2, data.table
System Requirements
URL

Suggests	MASS (>= 7.3.0), knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LinkHD_1.6.0.tar.gz
Windows Binary	LinkHD_1.6.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	LinkHD_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/LinkHD
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LinkHD
Bioc Package Browser	https://code.bioconductor.org/browse/LinkHD/
Package Short Url	https://bioconductor.org/packages/LinkHD/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.13	Source Archive