Imetagene
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Imetagene.
A graphical interface for the metagene package
Bioconductor version: 3.13
This package provide a graphical user interface to the metagene package. This will allow people with minimal R experience to easily complete metagene analysis.
Author: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>
Maintainer: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>
citation("Imetagene")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Imetagene")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Alignment, ChIPSeq, Coverage, Genetics, MultipleComparison, Sequencing, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | Artistic-2.0 | file LICENSE |
| Depends | R (>= 3.2.0), metagene, shiny |
| Imports | d3heatmap, shinyBS, shinyFiles, shinythemes, ggplot2 |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/andronekomimi/Imetagene/issues |
See More
| Suggests | knitr, BiocStyle, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Imetagene |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Imetagene |
| Package Short Url | https://bioconductor.org/packages/Imetagene/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |