GenVisR
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see GenVisR.
Genomic Visualizations in R
Bioconductor version: 3.13
Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.
Author: Zachary Skidmore [aut, cre], Alex Wagner [aut], Robert Lesurf [aut], Katie Campbell [aut], Jason Kunisaki [aut], Obi Griffith [aut], Malachi Griffith [aut]
Maintainer: Zachary Skidmore <zlskidmore at gmail.com>
citation("GenVisR")
):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenVisR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenVisR")
GenVisR: An introduction | HTML | R Script |
Visualizing Small Variants | HTML | R Script |
waterfall: function introduction | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Classification, DNASeq, DataRepresentation, Infrastructure, Software |
Version | 1.24.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | GPL-3 + file LICENSE |
Depends | R (>= 3.3.0), methods |
Imports | AnnotationDbi, biomaRt(>= 2.45.8), BiocGenerics, Biostrings, DBI, FField, GenomicFeatures, GenomicRanges(>= 1.25.4), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0), gtable, gtools, IRanges(>= 2.7.5), plyr (>= 1.8.3), reshape2, Rsamtools, scales, viridis, data.table, BSgenome, GenomeInfoDb, VariantAnnotation |
System Requirements | |
URL | |
Bug Reports | https://github.com/griffithlab/GenVisR/issues |
See More
Suggests | BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL, roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, rmarkdown, vdiffr, formatR, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GenVisR_1.24.0.tar.gz |
Windows Binary | GenVisR_1.24.0.zip |
macOS 10.13 (High Sierra) | GenVisR_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GenVisR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenVisR |
Bioc Package Browser | https://code.bioconductor.org/browse/GenVisR/ |
Package Short Url | https://bioconductor.org/packages/GenVisR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.13 | Source Archive |