BCRANK
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see BCRANK.
Predicting binding site consensus from ranked DNA sequences
Bioconductor version: 3.13
Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search
Author: Adam Ameur <Adam.Ameur at genpat.uu.se>
Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>
Citation (from within R, enter
citation("BCRANK")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BCRANK")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BCRANK")| BCRANK | R Script | |
| Reference Manual |
Details
| biocViews | GeneRegulation, MotifDiscovery, Software |
| Version | 1.54.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | GPL-2 |
| Depends | methods |
| Imports | Biostrings |
| System Requirements | |
| URL |
See More
| Suggests | seqLogo |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BCRANK_1.54.0.tar.gz |
| Windows Binary | BCRANK_1.54.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | BCRANK_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BCRANK |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BCRANK |
| Bioc Package Browser | https://code.bioconductor.org/browse/BCRANK/ |
| Package Short Url | https://bioconductor.org/packages/BCRANK/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |