Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT (2017). “Reproducible RNA-seq analysis using recount2.” Nature Biotechnology. doi: 10.1038/nbt.3838, http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html.

Collado-Torres L, Nellore A, Jaffe AE (2017). “recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations].” F1000Research. doi: 10.12688/f1000research.12223.1, https://f1000research.com/articles/6-1558/v1.

Ellis SE, Collado-Torres L, Jaffe AE, Leek JT (2018). “Improving the value of public RNA-seq expression data by phenotype prediction.” Nucl. Acids Res.. doi: 10.1093/nar/gky102, https://doi.org/10.1093/nar/gky102.

Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT (2021). Explore and download data from the recount project. doi: 10.18129/B9.bioc.recount, https://github.com/leekgroup/recount - R package version 1.18.1, http://www.bioconductor.org/packages/recount.

Frazee AC, Langmead B, Leek JT (2011). “ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets.” BMC Bioinformatics. doi: 10.1186/1471-2105-12-449, https://doi.org/10.1186/1471-2105-12-449.

Razmara A, Ellis SE, Sokolowski DJ, Davis S, Wilson MD, Leek JT, Jaffe AE, Collado-Torres L (2019). “recount-brain: a curated repository of human brain RNA-seq datasets metadata.” bioRxiv. doi: 10.1101/618025, https://doi.org/10.1101/618025.

Imada E, Sanchez DF, Collado-Torres L, Wilks C, Matam T, Dinalankara W, Stupnikov A, Lobo-Pereira F, Yip C, Yasuzawa K, Kondo N, Itoh M, Suzuki H, Kasukawa T, Hon CC, de Hoon MJ, Shin JW, Carninci P, Jaffe AE, Leek JT, Favorov A, Franco GR, Langmead B, Marchionni L (2020). “Recounting the FANTOM CAGE–Associated Transcriptome.” Genome Research. doi: 10.1101/gr.254656.119, https://doi.org/10.1101/gr.254656.119.