Bengtsson H, Neuvial P, Speed TP (2010). “TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays.” BMC Bioinformatics, 11(245). doi: 10.1186/1471-2105-11-245, http://www.biomedcentral.com/1471-2105/11/245/.

Bengtsson H, Ray A, Spellman P, Speed TP (2009). “A single-sample method for normalizing and combining full-resolutioncopy numbers from multiple platforms, labs and analysis methods.” Bioinformatics, 25(7). doi: 10.1093/bioinformatics/btp074, http://bioinformatics.oxfordjournals.org/cgi/content/full/25/7/861.

Bengtsson H, Simpson K, Bullard J, Hansen K (2008). “aroma.affymetrix: A generic framework in R for analyzing small to very large Affymetrix data sets in bounded memory.” Technical Report 745, Department of Statistics, University of California, Berkeley.

Bengtsson H, Irizarry R, Carvalho B, Speed T (2008). “Estimation and assessment of raw copy numbers at the single locus level.” Bioinformatics, 24(6). http://bioinformatics.oxfordjournals.org/cgi/content/full/24/6/759.

Bengtsson H, H"ossjer O (2006). “Methodological study of affine transformations of gene expressiondata with proposed robust non-parametric multi-dimensional normalization method.” BMC Bioinformatics, 7(100). doi: 10.1186/1471-2105-7-100, http://www.biomedcentral.com/1471-2105/7/100.

Bengtsson H, J"onsson G, Vallon-Christersson J (2004). “Calibration and assessment of channel-specific biases in microarray data with extended dynamical range.” BMC Bioinformatics, 5(177). doi: 10.1186/1471-2105-5-177, http://www.biomedcentral.com/1471-2105/5/177.

Bengtsson H (2004). “aroma - An R Object-oriented Microarray Analysis environment.” Preprint in Mathematical Sciences 18, Mathematical Statistics, Centre for Mathematical Sciences, Lund University, Sweden. http://www1.maths.lth.se/bioinformatics/publications/.